Wall clock time and date at job start Wed Apr 1 2020 04:46:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 109.46867 * 2 1 4 4 C 1.52999 * 109.47125 * 240.00000 * 2 1 3 5 5 C 1.53000 * 109.47186 * 174.41816 * 4 2 1 6 6 H 1.09007 * 109.46451 * 54.69138 * 5 4 2 7 7 C 1.52992 * 109.47328 * 294.69193 * 5 4 2 8 8 N 1.46498 * 109.47086 * 174.68671 * 5 4 2 9 9 C 1.36938 * 120.00133 * 203.08124 * 8 5 4 10 10 H 1.07999 * 119.99862 * 5.60846 * 9 8 5 11 11 C 1.38810 * 120.00332 * 185.61543 * 9 8 5 12 12 N 1.31620 * 120.00328 * 185.87711 * 11 9 8 13 13 Si 1.86801 * 119.99964 * 6.14508 * 11 9 8 14 14 H 1.48496 * 109.47361 * 265.78409 * 13 11 9 15 15 H 1.48503 * 109.46666 * 25.78476 * 13 11 9 16 16 H 1.48501 * 109.46938 * 145.78030 * 13 11 9 17 17 N 1.46499 * 109.47322 * 119.99949 * 2 1 3 18 18 C 1.34779 * 120.00015 * 275.89736 * 17 2 1 19 19 O 1.21473 * 119.99883 * 5.32545 * 18 17 2 20 20 C 1.48453 * 119.99932 * 185.33077 * 18 17 2 21 21 C 1.39535 * 120.54694 * 185.26281 * 20 18 17 22 22 C 1.38764 * 118.26068 * 179.97438 * 21 20 18 23 23 N 1.32206 * 119.14748 * 0.02562 * 22 21 20 24 24 C 1.31883 * 121.03621 * 359.97438 * 23 22 21 25 25 C 1.50697 * 119.03902 * 179.97438 * 24 23 22 26 26 C 1.54264 * 110.03765 * 62.18711 * 25 24 23 27 27 C 1.54958 * 104.16515 * 217.13862 * 26 25 24 28 28 C 1.54888 * 102.77908 * 37.88641 * 27 26 25 29 29 C 1.53883 * 110.03128 * 304.97106 * 25 24 23 30 30 N 1.31583 * 121.91753 * 359.73914 * 24 23 22 31 31 H 1.09000 * 109.46988 * 60.00090 * 1 2 3 32 32 H 1.08998 * 109.46867 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.47315 * 299.99834 * 1 2 3 34 34 H 1.09008 * 109.47190 * 54.42194 * 4 2 1 35 35 H 1.09001 * 109.47522 * 294.42073 * 4 2 1 36 36 H 1.09005 * 109.47421 * 179.97438 * 7 5 4 37 37 H 1.09007 * 109.47310 * 299.99419 * 7 5 4 38 38 H 1.09001 * 109.47489 * 59.99690 * 7 5 4 39 39 H 0.97007 * 120.00383 * 23.07854 * 8 5 4 40 40 H 0.96992 * 120.00145 * 180.27446 * 12 11 9 41 41 H 0.97003 * 119.99748 * 95.89236 * 17 2 1 42 42 H 1.08000 * 120.86999 * 359.97438 * 21 20 18 43 43 H 1.08000 * 120.42592 * 179.97438 * 22 21 20 44 44 H 1.09007 * 110.01656 * 183.58474 * 25 24 23 45 45 H 1.09002 * 110.48413 * 335.78931 * 26 25 24 46 46 H 1.08997 * 110.48388 * 98.42297 * 26 25 24 47 47 H 1.09006 * 110.71784 * 279.57676 * 27 26 25 48 48 H 1.08999 * 110.76886 * 156.22026 * 27 26 25 49 49 H 1.08993 * 110.49104 * 203.41050 * 28 27 26 50 50 H 1.08996 * 110.59835 * 80.82006 * 28 27 26 51 51 H 1.09004 * 110.03194 * 238.57196 * 29 25 24 52 52 H 1.08992 * 110.03148 * 359.95228 * 29 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5636 -0.6009 -1.3214 6 1 4.0013 -0.9681 -0.3930 7 6 3.9504 0.8656 -1.5226 8 7 4.0636 -1.3965 -2.4453 9 6 5.3603 -1.8367 -2.4493 10 1 5.9878 -1.6758 -1.5852 11 6 5.8683 -2.4895 -3.5640 12 7 7.0748 -3.0143 -3.5265 13 14 4.8425 -2.6167 -5.1200 14 1 4.1034 -3.9046 -5.1218 15 1 3.8754 -1.4908 -5.1686 16 1 5.7334 -2.5555 -6.3065 17 7 2.0184 -0.6906 1.1962 18 6 2.1300 -0.0227 2.3615 19 8 1.7356 1.1231 2.4450 20 6 2.7350 -0.6875 3.5430 21 6 2.7574 -0.0475 4.7827 22 6 3.3343 -0.7127 5.8552 23 7 3.8395 -1.9200 5.6678 24 6 3.8017 -2.4964 4.4821 25 6 4.3916 -3.8735 4.3191 26 6 3.6323 -4.8820 5.2058 27 6 4.7351 -5.8436 5.7161 28 6 5.9334 -4.8927 5.9587 29 6 5.8542 -3.8804 4.7972 30 7 3.2600 -1.9058 3.4385 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3634 0.5138 0.8900 34 1 1.5974 -0.2683 -2.1365 35 1 1.7606 -1.7737 -1.2007 36 1 5.0359 0.9514 -1.5735 37 1 3.5126 1.2328 -2.4509 38 1 3.5783 1.4576 -0.6864 39 1 3.4761 -1.6117 -3.1866 40 1 7.4312 -3.4669 -4.3067 41 1 2.2614 -1.6285 1.1494 42 1 2.3368 0.9397 4.9043 43 1 3.3709 -0.2498 6.8303 44 1 4.3387 -4.1808 3.2746 45 1 3.1551 -4.3710 6.0420 46 1 2.8930 -5.4258 4.6178 47 1 4.9795 -6.5873 4.9576 48 1 4.4292 -6.3242 6.6454 49 1 6.8724 -5.4447 5.9201 50 1 5.8307 -4.3830 6.9166 51 1 6.5111 -4.1919 3.9850 52 1 6.1376 -2.8876 5.1463 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001135821508.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:46:36 Heat of formation + Delta-G solvation = 5.842725 kcal Electronic energy + Delta-G solvation = -30739.465288 eV Core-core repulsion = 26738.590530 eV Total energy + Delta-G solvation = -4000.874758 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.58046 -39.77069 -38.03364 -37.11788 -34.85277 -34.14282 -32.70250 -32.17715 -30.88164 -29.08269 -28.86849 -28.79727 -26.43399 -25.88218 -24.02767 -23.58466 -22.03251 -20.89889 -20.80069 -19.98862 -19.81438 -18.33101 -17.94032 -17.45833 -16.16581 -16.01972 -15.73549 -15.58470 -15.43148 -14.88852 -14.68873 -14.44540 -14.24898 -14.03523 -13.66704 -13.54883 -13.44788 -13.26990 -12.60789 -12.58091 -12.21262 -11.99210 -11.97038 -11.77629 -11.72278 -11.34032 -11.28109 -11.25048 -11.04291 -11.02667 -11.00437 -10.85152 -10.69423 -10.67114 -10.56575 -10.41608 -10.22403 -10.01792 -9.72147 -9.57281 -9.50087 -9.07325 -8.90310 -7.26143 -5.76485 -3.11604 0.28994 0.67409 2.60631 2.89330 3.37247 3.42257 3.46030 3.48901 3.57799 3.76956 4.34220 4.45135 4.49186 4.55301 4.60116 4.69526 4.76858 4.84586 5.11752 5.16063 5.26153 5.27893 5.31983 5.34791 5.40268 5.48968 5.52307 5.53490 5.55709 5.63262 5.69505 5.70415 5.75313 5.82038 5.88494 5.92534 6.02139 6.04680 6.08998 6.16362 6.17812 6.20836 6.23367 6.36673 6.48277 6.52437 6.62666 6.84532 7.03145 7.41388 7.77399 8.01424 8.04203 8.42775 9.21955 9.94232 10.14515 11.41959 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.008218 B = 0.003285 C = 0.002538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3406.524138 B = 8522.221010 C =11027.753476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.142 3.858 3 H 0.094 0.906 4 C -0.137 4.137 5 C 0.177 3.823 6 H 0.055 0.945 7 C -0.168 4.168 8 N -0.748 5.748 9 C -0.240 4.240 10 H 0.088 0.912 11 C 0.005 3.995 12 N -0.933 5.933 13 Si 0.880 3.120 14 H -0.286 1.286 15 H -0.275 1.275 16 H -0.292 1.292 17 N -0.693 5.693 18 C 0.571 3.429 19 O -0.530 6.530 20 C 0.136 3.864 21 C -0.180 4.180 22 C 0.149 3.851 23 N -0.498 5.498 24 C 0.330 3.670 25 C -0.029 4.029 26 C -0.111 4.111 27 C -0.122 4.122 28 C -0.119 4.119 29 C -0.111 4.111 30 N -0.488 5.488 31 H 0.067 0.933 32 H 0.057 0.943 33 H 0.059 0.941 34 H 0.077 0.923 35 H 0.072 0.928 36 H 0.056 0.944 37 H 0.045 0.955 38 H 0.039 0.961 39 H 0.360 0.640 40 H 0.259 0.741 41 H 0.414 0.586 42 H 0.159 0.841 43 H 0.176 0.824 44 H 0.104 0.896 45 H 0.071 0.929 46 H 0.069 0.931 47 H 0.070 0.930 48 H 0.067 0.933 49 H 0.065 0.935 50 H 0.068 0.932 51 H 0.073 0.927 52 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.234 0.671 20.700 23.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.038 3.962 3 H 0.112 0.888 4 C -0.175 4.175 5 C 0.068 3.932 6 H 0.073 0.927 7 C -0.228 4.228 8 N -0.390 5.390 9 C -0.370 4.370 10 H 0.106 0.894 11 C -0.191 4.191 12 N -0.581 5.581 13 Si 0.710 3.290 14 H -0.212 1.212 15 H -0.201 1.201 16 H -0.218 1.218 17 N -0.344 5.344 18 C 0.354 3.646 19 O -0.405 6.405 20 C -0.012 4.012 21 C -0.203 4.203 22 C -0.018 4.018 23 N -0.212 5.212 24 C 0.063 3.937 25 C -0.049 4.049 26 C -0.149 4.149 27 C -0.160 4.160 28 C -0.157 4.157 29 C -0.149 4.149 30 N -0.205 5.205 31 H 0.086 0.914 32 H 0.076 0.924 33 H 0.078 0.922 34 H 0.096 0.904 35 H 0.090 0.910 36 H 0.075 0.925 37 H 0.064 0.936 38 H 0.058 0.942 39 H 0.192 0.808 40 H 0.069 0.931 41 H 0.250 0.750 42 H 0.177 0.823 43 H 0.193 0.807 44 H 0.123 0.877 45 H 0.090 0.910 46 H 0.088 0.912 47 H 0.089 0.911 48 H 0.086 0.914 49 H 0.084 0.916 50 H 0.087 0.913 51 H 0.092 0.908 52 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -10.897 0.573 20.611 23.322 hybrid contribution -0.801 0.442 -1.198 1.507 sum -11.698 1.016 19.414 22.688 Atomic orbital electron populations 1.22177 0.95229 1.02168 1.02480 1.21165 0.93764 0.97852 0.83460 0.88801 1.22229 0.98051 1.00978 0.96268 1.20178 0.90245 0.90561 0.92210 0.92716 1.22470 1.02152 0.98458 0.99682 1.42753 1.11439 1.63168 1.21649 1.19049 0.87270 1.29637 1.01049 0.89381 1.24684 0.96180 1.00457 0.97757 1.69712 1.16556 1.41922 1.29938 0.86574 0.79877 0.77740 0.84768 1.21240 1.20084 1.21843 1.45989 1.64503 1.15359 1.08540 1.17774 0.78826 0.85549 0.82468 1.90777 1.48978 1.17087 1.83684 1.21706 0.94422 0.90739 0.94327 1.22949 1.00784 1.03176 0.93400 1.23347 0.89639 0.89568 0.99263 1.68115 1.16915 1.10845 1.25350 1.23141 0.90681 0.96471 0.83429 1.20749 0.95149 0.86639 1.02362 1.22414 0.97732 0.95933 0.98815 1.22492 0.95101 0.97448 1.00950 1.22315 0.98221 0.96612 0.98544 1.22144 0.93966 1.00319 0.98488 1.68251 1.09450 1.09055 1.33697 0.91427 0.92434 0.92160 0.90406 0.90954 0.92478 0.93563 0.94198 0.80829 0.93126 0.74966 0.82330 0.80721 0.87729 0.90981 0.91242 0.91145 0.91448 0.91605 0.91347 0.90810 0.91429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.80 9.47 37.16 0.35 -1.45 16 2 C 0.14 1.84 2.40 -67.93 -0.16 1.68 16 3 H 0.09 1.33 5.88 -51.93 -0.31 1.03 16 4 C -0.14 -1.97 4.39 -26.73 -0.12 -2.09 16 5 C 0.18 3.31 2.91 -67.94 -0.20 3.12 16 6 H 0.05 1.09 7.59 -51.93 -0.39 0.70 16 7 C -0.17 -3.03 9.24 37.15 0.34 -2.69 16 8 N -0.75 -17.30 4.91 -53.43 -0.26 -17.57 16 9 C -0.24 -6.71 10.39 -15.06 -0.16 -6.87 16 10 H 0.09 2.67 8.06 -52.49 -0.42 2.25 16 11 C 0.00 0.14 5.50 -17.43 -0.10 0.05 16 12 N -0.93 -29.24 13.97 55.49 0.78 -28.46 16 13 Si 0.88 21.92 27.66 -169.99 -4.70 17.22 16 14 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 15 H -0.28 -6.47 6.67 56.52 0.38 -6.09 16 16 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 17 N -0.69 -9.22 4.46 -54.56 -0.24 -9.46 16 18 C 0.57 8.04 7.77 -12.05 -0.09 7.95 16 19 O -0.53 -8.41 16.02 5.39 0.09 -8.32 16 20 C 0.14 1.76 6.79 -82.64 -0.56 1.20 16 21 C -0.18 -1.87 9.72 -38.90 -0.38 -2.25 16 22 C 0.15 1.35 11.31 -17.20 -0.19 1.16 16 23 N -0.50 -5.48 9.39 -10.74 -0.10 -5.58 16 24 C 0.33 4.01 6.17 -157.30 -0.97 3.04 16 25 C -0.03 -0.31 3.29 -90.65 -0.30 -0.61 16 26 C -0.11 -0.99 6.33 -25.04 -0.16 -1.15 16 27 C -0.12 -0.96 6.91 -24.70 -0.17 -1.13 16 28 C -0.12 -1.00 6.83 -25.07 -0.17 -1.17 16 29 C -0.11 -1.12 6.32 -25.61 -0.16 -1.28 16 30 N -0.49 -6.48 9.60 -7.32 -0.07 -6.55 16 31 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 32 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 33 H 0.06 0.71 7.98 -51.93 -0.41 0.30 16 34 H 0.08 1.06 8.14 -51.92 -0.42 0.64 16 35 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 36 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 37 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.04 0.64 6.46 -51.93 -0.34 0.30 16 39 H 0.36 8.13 5.82 -40.82 -0.24 7.89 16 40 H 0.26 7.73 8.31 -40.82 -0.34 7.39 16 41 H 0.41 5.42 8.02 -40.82 -0.33 5.10 16 42 H 0.16 1.41 7.75 -52.49 -0.41 1.01 16 43 H 0.18 0.90 8.06 -52.49 -0.42 0.47 16 44 H 0.10 1.18 8.11 -51.93 -0.42 0.76 16 45 H 0.07 0.68 7.54 -51.93 -0.39 0.29 16 46 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 47 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 48 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 49 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 50 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 51 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 52 H 0.07 0.75 7.40 -51.93 -0.38 0.36 16 LS Contribution 417.30 15.07 6.29 6.29 Total: -1.00 -33.08 417.30 -10.12 -43.20 By element: Atomic # 1 Polarization: 20.42 SS G_CDS: -8.70 Total: 11.73 kcal Atomic # 6 Polarization: 0.70 SS G_CDS: -3.19 Total: -2.49 kcal Atomic # 7 Polarization: -67.72 SS G_CDS: 0.10 Total: -67.62 kcal Atomic # 8 Polarization: -8.41 SS G_CDS: 0.09 Total: -8.32 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -4.70 Total: 17.22 kcal Total LS contribution 6.29 Total: 6.29 kcal Total: -33.08 -10.12 -43.20 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135821508.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.043 kcal (2) G-P(sol) polarization free energy of solvation -33.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.201 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds