Wall clock time and date at job start Wed Apr 1 2020 04:38:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09007 * 109.47082 * 2 1 4 4 C 1.52998 * 109.47001 * 119.99454 * 2 1 3 5 5 C 1.50697 * 109.47395 * 295.00373 * 4 2 1 6 6 C 1.39874 * 126.04003 * 269.68921 * 5 4 2 7 7 N 1.30838 * 108.20571 * 179.81459 * 6 5 4 8 8 N 1.40085 * 108.20055 * 0.44444 * 7 6 5 9 9 C 1.46497 * 126.03534 * 179.69814 * 8 7 6 10 10 C 1.34945 * 107.92819 * 359.71505 * 8 7 6 11 11 C 1.50692 * 109.47337 * 240.00122 * 2 1 3 12 12 O 1.21288 * 119.99802 * 240.00387 * 11 2 1 13 13 N 1.34775 * 120.00423 * 59.99431 * 11 2 1 14 14 C 1.46501 * 120.00015 * 180.02562 * 13 11 2 15 15 C 1.52998 * 109.47212 * 180.02562 * 14 13 11 16 16 C 1.50692 * 109.47621 * 179.97438 * 15 14 13 17 17 C 1.29457 * 117.69188 * 94.99912 * 16 15 14 18 18 C 1.50323 * 123.65138 * 180.86339 * 17 16 15 19 19 N 1.47011 * 109.16414 * 349.02376 * 18 17 16 20 20 C 1.36940 * 121.37199 * 222.96990 * 19 18 17 21 21 H 1.08004 * 120.00103 * 155.97085 * 20 19 18 22 22 C 1.38816 * 119.99969 * 335.96821 * 20 19 18 23 23 N 1.31617 * 120.00174 * 344.51801 * 22 20 19 24 24 Si 1.86801 * 119.99618 * 164.51565 * 22 20 19 25 25 H 1.48508 * 109.46837 * 90.00366 * 24 22 20 26 26 H 1.48493 * 109.47091 * 209.99819 * 24 22 20 27 27 H 1.48498 * 109.47332 * 330.00537 * 24 22 20 28 28 C 1.47334 * 117.24996 * 42.94690 * 19 18 17 29 29 C 1.49972 * 117.69534 * 274.74314 * 16 15 14 30 30 H 1.08997 * 109.46911 * 60.00409 * 1 2 3 31 31 H 1.08996 * 109.46872 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.47112 * 300.00154 * 1 2 3 33 33 H 1.09001 * 109.47087 * 175.00386 * 4 2 1 34 34 H 1.08998 * 109.46900 * 55.00468 * 4 2 1 35 35 H 1.08006 * 125.89707 * 359.97438 * 6 5 4 36 36 H 1.09004 * 109.46912 * 270.02205 * 9 8 7 37 37 H 1.08997 * 109.47274 * 30.01919 * 9 8 7 38 38 H 1.09000 * 109.47318 * 150.02153 * 9 8 7 39 39 H 1.08004 * 126.12592 * 180.02562 * 10 8 7 40 40 H 0.97000 * 119.99787 * 0.02562 * 13 11 2 41 41 H 1.09002 * 109.46807 * 300.00220 * 14 13 11 42 42 H 1.08996 * 109.47162 * 59.99996 * 14 13 11 43 43 H 1.08995 * 109.47113 * 300.00402 * 15 14 13 44 44 H 1.09007 * 109.46757 * 59.99798 * 15 14 13 45 45 H 1.07997 * 118.17400 * 0.88057 * 17 16 15 46 46 H 1.08996 * 109.52381 * 108.92725 * 18 17 16 47 47 H 1.08996 * 109.52274 * 229.11395 * 18 17 16 48 48 H 0.96994 * 119.99905 * 179.97438 * 23 22 20 49 49 H 1.09001 * 109.78000 * 57.81680 * 28 19 18 50 50 H 1.09001 * 109.77494 * 178.62121 * 28 19 18 51 51 H 1.08993 * 109.31309 * 281.28378 * 29 16 15 52 52 H 1.09002 * 109.31367 * 40.71651 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7211 1.2493 5 6 1.6413 0.0572 2.4766 6 6 2.3927 1.0628 3.0934 7 7 1.7180 1.5032 4.1244 8 7 0.5187 0.7834 4.2022 9 6 -0.5259 0.9562 5.2146 10 6 0.4957 -0.0974 3.1801 11 6 2.0324 -0.7103 -1.2304 12 8 2.7297 -1.6965 -1.1191 13 7 1.7068 -0.2500 -2.4545 14 6 2.1948 -0.9410 -3.6506 15 6 1.6854 -0.2194 -4.9000 16 6 2.1878 -0.9297 -6.1303 17 6 1.4087 -1.8057 -6.6796 18 6 1.7812 -2.6046 -7.8973 19 7 3.0087 -2.0469 -8.4834 20 6 3.1422 -1.8833 -9.8364 21 1 3.8335 -1.1508 -10.2262 22 6 2.3889 -2.6589 -10.7070 23 7 1.7842 -3.7424 -10.2679 24 14 2.2332 -2.1648 -12.5017 25 1 3.3281 -2.7924 -13.2846 26 1 0.9226 -2.6221 -13.0292 27 1 2.3256 -0.6873 -12.6182 28 6 4.0892 -1.6709 -7.5549 29 6 3.5526 -0.5678 -6.6357 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 3.1263 -0.7993 1.2057 34 1 1.6054 -1.7197 1.2952 35 1 3.3613 1.4168 2.7725 36 1 -0.3252 0.2977 6.0598 37 1 -0.5345 1.9917 5.5549 38 1 -1.4953 0.7077 4.7826 39 1 -0.2954 -0.7996 2.9623 40 1 1.1494 0.5388 -2.5436 41 1 3.2848 -0.9413 -3.6507 42 1 1.8312 -1.9685 -3.6504 43 1 0.5954 -0.2186 -4.9000 44 1 2.0494 0.8080 -4.8999 45 1 0.4370 -1.9716 -6.2385 46 1 1.9523 -3.6429 -7.6134 47 1 0.9734 -2.5539 -8.6273 48 1 1.2576 -4.2841 -10.8761 49 1 4.3856 -2.5374 -6.9637 50 1 4.9449 -1.2968 -8.1170 51 1 3.4957 0.3704 -7.1875 52 1 4.2293 -0.4450 -5.7900 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001161590115.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:38:00 Heat of formation + Delta-G solvation = 65.336966 kcal Electronic energy + Delta-G solvation = -29162.382581 eV Core-core repulsion = 25164.087687 eV Total energy + Delta-G solvation = -3998.294894 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.47 seconds Orbital eigenvalues (eV) -41.62036 -39.93931 -37.90526 -35.67897 -35.19785 -33.61758 -33.30872 -31.41581 -30.56857 -29.78203 -28.64752 -28.08225 -26.07563 -25.42644 -23.70996 -22.79581 -22.25509 -21.43488 -20.93566 -20.59630 -19.80651 -17.61176 -17.42922 -16.84874 -16.30157 -15.82351 -15.77054 -15.52658 -15.06250 -14.82520 -14.68183 -14.24023 -13.96271 -13.83442 -13.60292 -13.54901 -13.46286 -13.21834 -13.09233 -12.72643 -12.66935 -12.55447 -12.24589 -12.12982 -11.96445 -11.57094 -11.51429 -11.41831 -11.34273 -10.97205 -10.88963 -10.82341 -10.69846 -10.30947 -10.23878 -9.85246 -9.78919 -9.75835 -9.50496 -9.07622 -8.70578 -8.62958 -7.89390 -6.69650 -5.76394 -3.14843 1.50457 2.13716 2.41379 2.59635 2.87179 3.25062 3.39304 3.45929 3.48306 4.10292 4.43827 4.48441 4.51868 4.62674 4.64813 4.70099 4.77514 4.91285 5.08631 5.13168 5.14981 5.20154 5.27150 5.31691 5.40904 5.42463 5.47897 5.57927 5.60141 5.68128 5.75019 5.83541 5.93631 5.98925 6.04662 6.09338 6.19037 6.24500 6.30042 6.41318 6.42981 6.58530 6.61472 6.81987 6.93856 7.26341 7.32497 7.35014 7.41965 7.45980 7.77531 7.91184 8.17559 8.41776 9.23246 9.86273 10.45059 11.34019 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.037722 B = 0.001461 C = 0.001445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 742.085210 B =19164.586118 C =19374.530308 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.105 4.105 3 H 0.096 0.904 4 C -0.021 4.021 5 C -0.230 4.230 6 C 0.053 3.947 7 N -0.300 5.300 8 N -0.379 5.379 9 C 0.102 3.898 10 C 0.056 3.944 11 C 0.513 3.487 12 O -0.539 6.539 13 N -0.730 5.730 14 C 0.124 3.876 15 C -0.091 4.091 16 C -0.142 4.142 17 C -0.147 4.147 18 C 0.197 3.803 19 N -0.595 5.595 20 C -0.245 4.245 21 H 0.068 0.932 22 C -0.002 4.002 23 N -0.909 5.909 24 Si 0.904 3.096 25 H -0.287 1.287 26 H -0.290 1.290 27 H -0.280 1.280 28 C 0.143 3.857 29 C -0.091 4.091 30 H 0.058 0.942 31 H 0.060 0.940 32 H 0.066 0.934 33 H 0.080 0.920 34 H 0.074 0.926 35 H 0.183 0.817 36 H 0.074 0.926 37 H 0.088 0.912 38 H 0.087 0.913 39 H 0.172 0.828 40 H 0.398 0.602 41 H 0.068 0.932 42 H 0.068 0.932 43 H 0.065 0.935 44 H 0.066 0.934 45 H 0.091 0.909 46 H 0.038 0.962 47 H 0.090 0.910 48 H 0.253 0.747 49 H 0.024 0.976 50 H 0.056 0.944 51 H 0.062 0.938 52 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.576 10.623 28.960 31.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.126 4.126 3 H 0.114 0.886 4 C -0.060 4.060 5 C -0.242 4.242 6 C -0.133 4.133 7 N -0.121 5.121 8 N -0.161 5.161 9 C -0.040 4.040 10 C -0.089 4.089 11 C 0.299 3.701 12 O -0.416 6.416 13 N -0.382 5.382 14 C 0.001 3.999 15 C -0.129 4.129 16 C -0.143 4.143 17 C -0.166 4.166 18 C 0.072 3.928 19 N -0.319 5.319 20 C -0.374 4.374 21 H 0.086 0.914 22 C -0.200 4.200 23 N -0.555 5.555 24 Si 0.734 3.266 25 H -0.214 1.214 26 H -0.216 1.216 27 H -0.206 1.206 28 C 0.016 3.984 29 C -0.130 4.130 30 H 0.077 0.923 31 H 0.079 0.921 32 H 0.085 0.915 33 H 0.098 0.902 34 H 0.093 0.907 35 H 0.200 0.800 36 H 0.092 0.908 37 H 0.107 0.893 38 H 0.105 0.895 39 H 0.190 0.810 40 H 0.232 0.768 41 H 0.087 0.913 42 H 0.086 0.914 43 H 0.084 0.916 44 H 0.085 0.915 45 H 0.109 0.891 46 H 0.056 0.944 47 H 0.108 0.892 48 H 0.063 0.937 49 H 0.042 0.958 50 H 0.074 0.926 51 H 0.081 0.919 52 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -6.313 10.627 30.013 32.458 hybrid contribution -0.588 0.036 -1.629 1.732 sum -6.901 10.662 28.384 31.096 Atomic orbital electron populations 1.21804 0.93156 1.02616 1.02488 1.21302 0.97520 1.00944 0.92865 0.88570 1.19665 1.01783 0.96970 0.87599 1.20078 0.96586 1.04784 1.02725 1.23856 1.00092 0.96079 0.93288 1.77371 0.94063 1.18951 1.21703 1.48466 1.16040 1.28685 1.22930 1.21851 0.87784 1.04224 0.90139 1.22371 1.00133 0.96179 0.90259 1.20673 0.80113 0.84646 0.84643 1.90721 1.37776 1.26271 1.86846 1.46142 1.53866 1.32137 1.06028 1.21426 0.99624 0.96395 0.82484 1.20904 1.00260 0.99083 0.92657 1.20237 0.97542 1.00125 0.96425 1.23112 0.97646 0.96888 0.98991 1.19699 0.90198 0.92805 0.90135 1.44130 1.11225 1.74410 1.02107 1.19180 1.22781 1.14406 0.81082 0.91443 1.24982 1.01620 0.95442 0.97911 1.70017 1.36619 1.14237 1.34606 0.86272 0.77172 0.78103 0.85097 1.21449 1.21606 1.20585 1.20993 0.91449 0.94262 0.91681 1.20791 0.93355 1.00354 0.98500 0.92300 0.92070 0.91502 0.90156 0.90709 0.80044 0.90783 0.89326 0.89470 0.81043 0.76818 0.91334 0.91368 0.91626 0.91534 0.89119 0.94447 0.89191 0.93665 0.95785 0.92580 0.91942 0.92909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.88 8.80 37.16 0.33 -0.55 16 2 C -0.10 -0.81 2.71 -91.77 -0.25 -1.06 16 3 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 4 C -0.02 -0.17 4.52 -27.88 -0.13 -0.30 16 5 C -0.23 -1.79 4.82 -105.05 -0.51 -2.30 16 6 C 0.05 0.45 11.96 -17.36 -0.21 0.24 16 7 N -0.30 -2.93 12.58 30.63 0.39 -2.54 16 8 N -0.38 -2.80 4.01 -68.16 -0.27 -3.07 16 9 C 0.10 0.34 11.47 59.85 0.69 1.03 16 10 C 0.06 0.38 10.03 -17.22 -0.17 0.20 16 11 C 0.51 5.79 7.15 -10.99 -0.08 5.71 16 12 O -0.54 -8.41 15.92 5.55 0.09 -8.33 16 13 N -0.73 -7.44 5.45 -60.30 -0.33 -7.77 16 14 C 0.12 1.58 5.66 -4.04 -0.02 1.56 16 15 C -0.09 -1.17 5.32 -27.89 -0.15 -1.32 16 16 C -0.14 -2.45 5.11 -100.99 -0.52 -2.97 16 17 C -0.15 -2.85 9.47 -35.78 -0.34 -3.19 16 18 C 0.20 4.76 5.23 -5.10 -0.03 4.74 16 19 N -0.60 -15.18 3.01 -173.56 -0.52 -15.70 16 20 C -0.25 -6.79 9.71 -15.06 -0.15 -6.94 16 21 H 0.07 1.83 7.88 -52.48 -0.41 1.41 16 22 C 0.00 -0.05 5.01 -17.43 -0.09 -0.14 16 23 N -0.91 -26.47 11.08 55.49 0.61 -25.86 16 24 Si 0.90 21.80 29.58 -169.99 -5.03 16.77 16 25 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 26 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 27 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 28 C 0.14 3.04 6.59 -3.44 -0.02 3.02 16 29 C -0.09 -1.61 5.95 -28.08 -0.17 -1.78 16 30 H 0.06 0.32 7.56 -51.93 -0.39 -0.08 16 31 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.07 0.37 6.42 -51.93 -0.33 0.04 16 33 H 0.08 0.75 7.96 -51.93 -0.41 0.33 16 34 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.18 1.15 8.06 -52.48 -0.42 0.72 16 36 H 0.07 0.19 8.14 -51.93 -0.42 -0.24 16 37 H 0.09 0.28 8.14 -51.93 -0.42 -0.15 16 38 H 0.09 0.09 8.14 -51.93 -0.42 -0.33 16 39 H 0.17 0.67 8.06 -52.48 -0.42 0.25 16 40 H 0.40 2.94 7.89 -40.82 -0.32 2.61 16 41 H 0.07 0.97 8.11 -51.93 -0.42 0.55 16 42 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 43 H 0.07 0.78 7.78 -51.93 -0.40 0.38 16 44 H 0.07 0.77 8.11 -51.93 -0.42 0.35 16 45 H 0.09 1.56 7.73 -52.49 -0.41 1.15 16 46 H 0.04 0.98 8.14 -51.93 -0.42 0.56 16 47 H 0.09 2.41 6.41 -51.93 -0.33 2.08 16 48 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 49 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 50 H 0.06 1.16 7.96 -51.93 -0.41 0.74 16 51 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 52 H 0.05 0.81 8.10 -51.93 -0.42 0.39 16 LS Contribution 420.20 15.07 6.33 6.33 Total: -1.00 -34.77 420.20 -9.44 -44.21 By element: Atomic # 1 Polarization: 8.88 SS G_CDS: -8.90 Total: -0.02 kcal Atomic # 6 Polarization: -2.23 SS G_CDS: -1.80 Total: -4.03 kcal Atomic # 7 Polarization: -54.81 SS G_CDS: -0.12 Total: -54.93 kcal Atomic # 8 Polarization: -8.41 SS G_CDS: 0.09 Total: -8.33 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.03 Total: 16.77 kcal Total LS contribution 6.33 Total: 6.33 kcal Total: -34.77 -9.44 -44.21 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161590115.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.546 kcal (2) G-P(sol) polarization free energy of solvation -34.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.209 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.47 seconds