Wall clock time and date at job start Wed Apr 1 2020 04:37:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09007 * 109.47082 * 2 1 4 4 C 1.52998 * 109.47001 * 119.99454 * 2 1 3 5 5 C 1.50697 * 109.47395 * 295.00373 * 4 2 1 6 6 C 1.39874 * 126.04003 * 269.68921 * 5 4 2 7 7 N 1.30838 * 108.20571 * 179.81459 * 6 5 4 8 8 N 1.40085 * 108.20055 * 0.44444 * 7 6 5 9 9 C 1.46497 * 126.03534 * 179.69814 * 8 7 6 10 10 C 1.34945 * 107.92819 * 359.71505 * 8 7 6 11 11 C 1.50692 * 109.47337 * 240.00122 * 2 1 3 12 12 O 1.21288 * 119.99802 * 240.00387 * 11 2 1 13 13 N 1.34775 * 120.00423 * 59.99431 * 11 2 1 14 14 C 1.46501 * 120.00015 * 180.02562 * 13 11 2 15 15 C 1.52998 * 109.47212 * 180.02562 * 14 13 11 16 16 C 1.50692 * 109.47621 * 179.97438 * 15 14 13 17 17 C 1.29457 * 117.69188 * 94.99912 * 16 15 14 18 18 C 1.50323 * 123.65138 * 180.86339 * 17 16 15 19 19 N 1.47011 * 109.16414 * 349.02376 * 18 17 16 20 20 C 1.36940 * 121.37199 * 222.96990 * 19 18 17 21 21 H 1.08004 * 120.00103 * 155.97085 * 20 19 18 22 22 C 1.38816 * 119.99969 * 335.96821 * 20 19 18 23 23 N 1.31617 * 120.00174 * 344.51801 * 22 20 19 24 24 Si 1.86801 * 119.99618 * 164.51565 * 22 20 19 25 25 H 1.48508 * 109.46837 * 90.00366 * 24 22 20 26 26 H 1.48493 * 109.47091 * 209.99819 * 24 22 20 27 27 H 1.48498 * 109.47332 * 330.00537 * 24 22 20 28 28 C 1.47334 * 117.24996 * 42.94690 * 19 18 17 29 29 C 1.49972 * 117.69534 * 274.74314 * 16 15 14 30 30 H 1.08997 * 109.46911 * 60.00409 * 1 2 3 31 31 H 1.08996 * 109.46872 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.47112 * 300.00154 * 1 2 3 33 33 H 1.09001 * 109.47087 * 175.00386 * 4 2 1 34 34 H 1.08998 * 109.46900 * 55.00468 * 4 2 1 35 35 H 1.08006 * 125.89707 * 359.97438 * 6 5 4 36 36 H 1.09004 * 109.46912 * 270.02205 * 9 8 7 37 37 H 1.08997 * 109.47274 * 30.01919 * 9 8 7 38 38 H 1.09000 * 109.47318 * 150.02153 * 9 8 7 39 39 H 1.08004 * 126.12592 * 180.02562 * 10 8 7 40 40 H 0.97000 * 119.99787 * 0.02562 * 13 11 2 41 41 H 1.09002 * 109.46807 * 300.00220 * 14 13 11 42 42 H 1.08996 * 109.47162 * 59.99996 * 14 13 11 43 43 H 1.08995 * 109.47113 * 300.00402 * 15 14 13 44 44 H 1.09007 * 109.46757 * 59.99798 * 15 14 13 45 45 H 1.07997 * 118.17400 * 0.88057 * 17 16 15 46 46 H 1.08996 * 109.52381 * 108.92725 * 18 17 16 47 47 H 1.08996 * 109.52274 * 229.11395 * 18 17 16 48 48 H 0.96994 * 119.99905 * 179.97438 * 23 22 20 49 49 H 1.09001 * 109.78000 * 57.81680 * 28 19 18 50 50 H 1.09001 * 109.77494 * 178.62121 * 28 19 18 51 51 H 1.08993 * 109.31309 * 281.28378 * 29 16 15 52 52 H 1.09002 * 109.31367 * 40.71651 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7211 1.2493 5 6 1.6413 0.0572 2.4766 6 6 2.3927 1.0628 3.0934 7 7 1.7180 1.5032 4.1244 8 7 0.5187 0.7834 4.2022 9 6 -0.5259 0.9562 5.2146 10 6 0.4957 -0.0974 3.1801 11 6 2.0324 -0.7103 -1.2304 12 8 2.7297 -1.6965 -1.1191 13 7 1.7068 -0.2500 -2.4545 14 6 2.1948 -0.9410 -3.6506 15 6 1.6854 -0.2194 -4.9000 16 6 2.1878 -0.9297 -6.1303 17 6 1.4087 -1.8057 -6.6796 18 6 1.7812 -2.6046 -7.8973 19 7 3.0087 -2.0469 -8.4834 20 6 3.1422 -1.8833 -9.8364 21 1 3.8335 -1.1508 -10.2262 22 6 2.3889 -2.6589 -10.7070 23 7 1.7842 -3.7424 -10.2679 24 14 2.2332 -2.1648 -12.5017 25 1 3.3281 -2.7924 -13.2846 26 1 0.9226 -2.6221 -13.0292 27 1 2.3256 -0.6873 -12.6182 28 6 4.0892 -1.6709 -7.5549 29 6 3.5526 -0.5678 -6.6357 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 3.1263 -0.7993 1.2057 34 1 1.6054 -1.7197 1.2952 35 1 3.3613 1.4168 2.7725 36 1 -0.3252 0.2977 6.0598 37 1 -0.5345 1.9917 5.5549 38 1 -1.4953 0.7077 4.7826 39 1 -0.2954 -0.7996 2.9623 40 1 1.1494 0.5388 -2.5436 41 1 3.2848 -0.9413 -3.6507 42 1 1.8312 -1.9685 -3.6504 43 1 0.5954 -0.2186 -4.9000 44 1 2.0494 0.8080 -4.8999 45 1 0.4370 -1.9716 -6.2385 46 1 1.9523 -3.6429 -7.6134 47 1 0.9734 -2.5539 -8.6273 48 1 1.2576 -4.2841 -10.8761 49 1 4.3856 -2.5374 -6.9637 50 1 4.9449 -1.2968 -8.1170 51 1 3.4957 0.3704 -7.1875 52 1 4.2293 -0.4450 -5.7900 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001161590115.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:37:58 Heat of formation + Delta-G solvation = 43.630875 kcal Electronic energy + Delta-G solvation = -29163.323828 eV Core-core repulsion = 25164.087687 eV Total energy + Delta-G solvation = -3999.236141 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.38 seconds Orbital eigenvalues (eV) -42.16111 -40.84186 -39.46017 -36.79962 -36.03825 -35.07982 -33.88125 -33.11077 -31.52780 -31.20688 -29.97598 -28.58255 -27.15794 -26.50955 -24.95202 -24.29228 -23.44639 -22.43589 -21.95099 -21.29854 -20.55442 -19.44737 -18.18033 -17.59153 -17.41236 -17.06528 -16.84097 -16.57227 -16.24831 -15.75113 -15.70883 -15.35185 -15.24304 -15.20324 -14.81355 -14.65185 -14.22948 -14.11213 -13.93514 -13.74217 -13.54913 -13.35183 -13.21202 -13.16362 -13.13848 -12.83653 -12.78525 -12.76124 -12.56259 -12.33344 -12.17248 -12.06170 -11.99812 -11.85921 -11.65930 -11.41493 -11.22181 -10.70247 -10.67357 -10.32143 -10.03573 -9.47017 -9.24646 -8.74113 -7.87388 -5.29451 0.98908 1.43839 1.47257 1.48301 1.58338 1.72364 1.73796 1.83332 2.35560 2.51791 3.29480 3.64885 3.69007 3.81511 3.98397 4.01089 4.06360 4.13927 4.15884 4.19219 4.32772 4.37951 4.46596 4.54444 4.57034 4.60022 4.62001 4.69850 4.72511 4.73330 4.87703 4.91604 4.92962 4.98235 5.00522 5.04203 5.13784 5.19699 5.25103 5.27803 5.30999 5.42259 5.43037 5.50881 5.51562 5.61506 5.74519 5.89774 6.18737 6.30286 6.34366 6.63934 6.77830 7.13947 7.34383 7.84085 8.39087 9.21248 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.037722 B = 0.001461 C = 0.001445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 742.085210 B =19164.586118 C =19374.530308 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.094 4.094 3 H 0.112 0.888 4 C -0.014 4.014 5 C -0.242 4.242 6 C 0.043 3.957 7 N -0.338 5.338 8 N -0.382 5.382 9 C 0.092 3.908 10 C 0.064 3.936 11 C 0.511 3.489 12 O -0.588 6.588 13 N -0.717 5.717 14 C 0.132 3.868 15 C -0.078 4.078 16 C -0.121 4.121 17 C -0.175 4.175 18 C 0.207 3.793 19 N -0.615 5.615 20 C -0.259 4.259 21 H 0.071 0.929 22 C -0.056 4.056 23 N -0.941 5.941 24 Si 0.971 3.029 25 H -0.285 1.285 26 H -0.292 1.292 27 H -0.269 1.269 28 C 0.135 3.865 29 C -0.087 4.087 30 H 0.071 0.929 31 H 0.056 0.944 32 H 0.077 0.923 33 H 0.063 0.937 34 H 0.066 0.934 35 H 0.193 0.807 36 H 0.082 0.918 37 H 0.088 0.912 38 H 0.115 0.885 39 H 0.201 0.799 40 H 0.416 0.584 41 H 0.056 0.944 42 H 0.047 0.953 43 H 0.084 0.916 44 H 0.092 0.908 45 H 0.113 0.887 46 H 0.001 0.999 47 H 0.055 0.945 48 H 0.249 0.751 49 H 0.017 0.983 50 H 0.058 0.942 51 H 0.069 0.931 52 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.763 13.129 30.325 33.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.115 4.115 3 H 0.130 0.870 4 C -0.053 4.053 5 C -0.254 4.254 6 C -0.142 4.142 7 N -0.160 5.160 8 N -0.164 5.164 9 C -0.048 4.048 10 C -0.083 4.083 11 C 0.299 3.701 12 O -0.468 6.468 13 N -0.369 5.369 14 C 0.008 3.992 15 C -0.115 4.115 16 C -0.122 4.122 17 C -0.194 4.194 18 C 0.081 3.919 19 N -0.339 5.339 20 C -0.389 4.389 21 H 0.089 0.911 22 C -0.250 4.250 23 N -0.588 5.588 24 Si 0.799 3.201 25 H -0.212 1.212 26 H -0.219 1.219 27 H -0.194 1.194 28 C 0.009 3.991 29 C -0.125 4.125 30 H 0.090 0.910 31 H 0.075 0.925 32 H 0.096 0.904 33 H 0.081 0.919 34 H 0.085 0.915 35 H 0.209 0.791 36 H 0.101 0.899 37 H 0.107 0.893 38 H 0.133 0.867 39 H 0.218 0.782 40 H 0.253 0.747 41 H 0.074 0.926 42 H 0.065 0.935 43 H 0.102 0.898 44 H 0.110 0.890 45 H 0.131 0.869 46 H 0.019 0.981 47 H 0.073 0.927 48 H 0.058 0.942 49 H 0.035 0.965 50 H 0.077 0.923 51 H 0.087 0.913 52 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -7.506 13.193 31.408 34.883 hybrid contribution -0.146 -0.758 -1.972 2.118 sum -7.652 12.435 29.436 32.858 Atomic orbital electron populations 1.21794 0.91421 1.02723 1.03665 1.21276 0.98735 1.00931 0.90566 0.86988 1.19520 1.00662 0.96784 0.88313 1.20033 0.97276 1.05099 1.02976 1.24126 1.00635 0.96281 0.93187 1.77312 0.95511 1.20533 1.22639 1.48795 1.15889 1.28204 1.23488 1.22170 0.88012 1.04597 0.89993 1.22810 1.00289 0.95786 0.89390 1.21317 0.79123 0.84002 0.85656 1.90708 1.40016 1.28562 1.87513 1.45962 1.53612 1.32348 1.04976 1.21132 0.98828 0.95686 0.83547 1.20798 1.01369 0.99492 0.89890 1.20599 0.96488 0.98202 0.96887 1.22815 0.99769 0.98616 0.98181 1.19350 0.88975 0.92161 0.91366 1.44420 1.12697 1.74572 1.02200 1.19548 1.22629 1.14213 0.82525 0.91130 1.25790 1.01712 0.95489 1.02051 1.70197 1.37488 1.15346 1.35790 0.85220 0.76737 0.78133 0.80028 1.21163 1.21862 1.19432 1.21193 0.90891 0.95277 0.91718 1.20744 0.94215 0.98789 0.98793 0.91008 0.92505 0.90437 0.91877 0.91521 0.79068 0.89937 0.89334 0.86675 0.78239 0.74715 0.92586 0.93464 0.89783 0.88962 0.86873 0.98093 0.92670 0.94155 0.96479 0.92295 0.91279 0.89700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.27 8.80 71.98 0.63 -0.63 16 2 C -0.09 -1.25 2.71 -11.54 -0.03 -1.28 16 3 H 0.11 1.19 8.14 -2.38 -0.02 1.17 16 4 C -0.01 -0.21 4.52 29.85 0.13 -0.08 16 5 C -0.24 -3.44 4.82 -20.14 -0.10 -3.53 16 6 C 0.04 0.69 11.96 85.24 1.02 1.71 16 7 N -0.34 -6.31 12.58 -57.02 -0.72 -7.02 16 8 N -0.38 -4.94 4.01 -369.57 -1.48 -6.42 16 9 C 0.09 0.42 11.47 127.77 1.47 1.89 16 10 C 0.06 0.71 10.03 83.54 0.84 1.55 16 11 C 0.51 10.71 7.15 87.65 0.63 11.33 16 12 O -0.59 -18.21 15.92 -3.05 -0.05 -18.26 16 13 N -0.72 -12.58 5.45 -463.07 -2.52 -15.11 16 14 C 0.13 3.08 5.66 86.38 0.49 3.57 16 15 C -0.08 -1.71 5.32 29.85 0.16 -1.55 16 16 C -0.12 -3.91 5.11 -15.14 -0.08 -3.99 16 17 C -0.17 -6.72 9.47 27.10 0.26 -6.46 16 18 C 0.21 10.45 5.23 85.42 0.45 10.89 16 19 N -0.61 -32.04 3.01 -703.02 -2.11 -34.16 16 20 C -0.26 -14.62 9.71 84.03 0.82 -13.80 16 21 H 0.07 3.84 7.88 -2.91 -0.02 3.81 16 22 C -0.06 -3.18 5.01 84.86 0.43 -2.76 16 23 N -0.94 -56.93 11.08 21.65 0.24 -56.69 16 24 Si 0.97 45.50 29.58 68.60 2.03 47.52 16 25 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 26 H -0.29 -13.69 7.11 99.48 0.71 -12.98 16 27 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 28 C 0.13 5.73 6.59 86.32 0.57 6.30 16 29 C -0.09 -2.89 5.95 29.72 0.18 -2.71 16 30 H 0.07 0.49 7.56 -2.39 -0.02 0.47 16 31 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 32 H 0.08 0.58 6.42 -2.39 -0.02 0.57 16 33 H 0.06 1.18 7.96 -2.39 -0.02 1.17 16 34 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 35 H 0.19 2.36 8.06 -2.91 -0.02 2.33 16 36 H 0.08 0.25 8.14 -2.38 -0.02 0.23 16 37 H 0.09 0.41 8.14 -2.39 -0.02 0.39 16 38 H 0.11 -0.13 8.14 -2.39 -0.02 -0.15 16 39 H 0.20 0.91 8.06 -2.91 -0.02 0.88 16 40 H 0.42 4.43 7.89 -92.71 -0.73 3.70 16 41 H 0.06 1.47 8.11 -2.39 -0.02 1.45 16 42 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 43 H 0.08 1.63 7.78 -2.39 -0.02 1.61 16 44 H 0.09 1.66 8.11 -2.38 -0.02 1.64 16 45 H 0.11 3.78 7.73 -2.91 -0.02 3.76 16 46 H 0.00 0.08 8.14 -2.39 -0.02 0.06 16 47 H 0.06 3.11 6.41 -2.39 -0.02 3.10 16 48 H 0.25 14.57 8.31 -92.71 -0.77 13.80 16 49 H 0.02 0.74 8.14 -2.39 -0.02 0.73 16 50 H 0.06 2.42 7.96 -2.39 -0.02 2.40 16 51 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 52 H 0.08 2.33 8.10 -2.39 -0.02 2.31 16 Total: -1.00 -79.17 420.20 3.40 -75.77 By element: Atomic # 1 Polarization: 13.76 SS G_CDS: 0.17 Total: 13.92 kcal Atomic # 6 Polarization: -7.41 SS G_CDS: 7.85 Total: 0.43 kcal Atomic # 7 Polarization: -112.80 SS G_CDS: -6.60 Total: -119.40 kcal Atomic # 8 Polarization: -18.21 SS G_CDS: -0.05 Total: -18.26 kcal Atomic # 14 Polarization: 45.50 SS G_CDS: 2.03 Total: 47.52 kcal Total: -79.17 3.40 -75.77 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161590115.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.403 kcal (2) G-P(sol) polarization free energy of solvation -79.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.772 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds