Wall clock time and date at job start Wed Apr 1 2020 04:42:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08995 * 109.47385 * 2 1 4 4 C 1.53006 * 109.46766 * 119.99970 * 2 1 3 5 5 C 1.53008 * 109.46804 * 185.00132 * 4 2 1 6 6 C 1.52996 * 109.46809 * 179.97438 * 5 4 2 7 7 C 1.52998 * 109.46929 * 180.02562 * 6 5 4 8 8 N 1.46506 * 109.47233 * 180.02562 * 7 6 5 9 9 C 1.36931 * 119.99939 * 179.97438 * 8 7 6 10 10 H 1.08000 * 120.00644 * 359.97438 * 9 8 7 11 11 C 1.38815 * 119.99715 * 179.97438 * 9 8 7 12 12 N 1.31611 * 120.00107 * 0.02562 * 11 9 8 13 13 Si 1.86805 * 119.99746 * 179.72150 * 11 9 8 14 14 H 1.48506 * 109.46826 * 60.00664 * 13 11 9 15 15 H 1.48497 * 109.47051 * 180.02562 * 13 11 9 16 16 H 1.48499 * 109.47422 * 300.00472 * 13 11 9 17 17 N 1.46502 * 109.47307 * 239.99844 * 2 1 3 18 18 C 1.34775 * 119.99842 * 84.99882 * 17 2 1 19 19 O 1.21278 * 120.00009 * 0.02562 * 18 17 2 20 20 C 1.50701 * 119.99753 * 179.97438 * 18 17 2 21 21 H 1.09000 * 109.63864 * 300.40669 * 20 18 17 22 22 C 1.53314 * 109.63581 * 180.02562 * 20 18 17 23 23 C 1.52807 * 108.51746 * 170.52098 * 22 20 18 24 24 C 1.50434 * 110.45326 * 51.03590 * 23 22 20 25 25 N 1.32891 * 118.53732 * 162.33167 * 24 23 22 26 26 C 1.31605 * 121.06108 * 179.77478 * 25 24 23 27 27 N 1.31811 * 121.67300 * 359.95670 * 26 25 24 28 28 C 1.32193 * 120.64315 * 0.12634 * 27 26 25 29 29 C 1.37774 * 122.57736 * 342.27395 * 24 23 22 30 30 C 1.50330 * 122.80337 * 0.65338 * 29 24 23 31 31 H 1.08999 * 109.47184 * 300.00177 * 1 2 3 32 32 H 1.09002 * 109.47039 * 60.00141 * 1 2 3 33 33 H 1.09003 * 109.47201 * 179.97438 * 1 2 3 34 34 H 1.08996 * 109.46952 * 65.00231 * 4 2 1 35 35 H 1.09002 * 109.47088 * 304.99668 * 4 2 1 36 36 H 1.09000 * 109.47043 * 59.99847 * 5 4 2 37 37 H 1.09002 * 109.46920 * 299.99640 * 5 4 2 38 38 H 1.09000 * 109.47441 * 60.00093 * 6 5 4 39 39 H 1.08994 * 109.47235 * 299.99823 * 6 5 4 40 40 H 1.09001 * 109.47671 * 60.00109 * 7 6 5 41 41 H 1.09006 * 109.47297 * 299.99829 * 7 6 5 42 42 H 0.97000 * 119.99307 * 359.97438 * 8 7 6 43 43 H 0.97000 * 120.00330 * 179.97438 * 12 11 9 44 44 H 0.97008 * 119.99638 * 265.00529 * 17 2 1 45 45 H 1.08998 * 109.62825 * 290.23063 * 22 20 18 46 46 H 1.09000 * 109.62706 * 50.81158 * 22 20 18 47 47 H 1.08999 * 109.30314 * 171.33577 * 23 22 20 48 48 H 1.09002 * 109.30589 * 290.92735 * 23 22 20 49 49 H 1.08004 * 119.16439 * 179.97438 * 26 25 24 50 50 H 1.07995 * 120.36441 * 180.02562 * 28 27 26 51 51 H 1.08998 * 109.31431 * 222.11770 * 30 29 24 52 52 H 1.09004 * 109.30498 * 102.70993 * 30 29 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7213 1.2493 5 6 3.5648 -0.6133 1.3138 6 6 4.0746 -1.3340 2.5634 7 6 5.5994 -1.2255 2.6282 8 7 6.0877 -1.9161 3.8244 9 6 7.4297 -1.9524 4.0941 10 1 8.1283 -1.4723 3.4249 11 6 7.8923 -2.6063 5.2278 12 7 7.0412 -3.1918 6.0432 13 14 9.7237 -2.6626 5.5917 14 1 10.2418 -1.2786 5.7393 15 1 9.9554 -3.4152 6.8506 16 1 10.4300 -3.3389 4.4740 17 7 2.0183 -0.6906 -1.1962 18 6 2.1470 -0.0183 -2.3571 19 8 1.8590 1.1585 -2.4115 20 6 2.6500 -0.7286 -3.5874 21 1 3.6465 -1.1278 -3.3983 22 6 2.7035 0.2534 -4.7635 23 6 3.4332 -0.4200 -5.9251 24 6 2.8398 -1.7738 -6.2046 25 7 3.0922 -2.3480 -7.3761 26 6 2.6022 -3.5333 -7.6710 27 7 1.8449 -4.1997 -6.8225 28 6 1.5502 -3.6904 -5.6388 29 6 2.0482 -2.4391 -5.2941 30 6 1.6961 -1.8665 -3.9495 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3634 -1.0277 -0.0005 34 1 1.7515 -1.7715 1.2056 35 1 1.6053 -0.2617 2.1370 36 1 3.8531 0.4370 1.3574 37 1 3.9994 -1.0729 0.4261 38 1 3.7863 -2.3843 2.5202 39 1 3.6400 -0.8741 3.4508 40 1 5.8875 -0.1751 2.6717 41 1 6.0345 -1.6851 1.7407 42 1 5.4603 -2.3476 4.4253 43 1 7.3644 -3.6491 6.8352 44 1 2.2490 -1.6319 -1.1525 45 1 1.6903 0.5140 -5.0693 46 1 3.2418 1.1530 -4.4652 47 1 3.3452 0.2028 -6.8153 48 1 4.4864 -0.5369 -5.6698 49 1 2.8265 -3.9713 -8.6324 50 1 0.9297 -4.2405 -4.9469 51 1 1.7663 -2.6496 -3.1946 52 1 0.6749 -1.4861 -3.9760 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001171217562.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:42:07 Heat of formation + Delta-G solvation = -14.632997 kcal Electronic energy + Delta-G solvation = -29465.162195 eV Core-core repulsion = 25463.399543 eV Total energy + Delta-G solvation = -4001.762652 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.85280 -40.33182 -37.63937 -36.67541 -35.29214 -34.55592 -33.30402 -32.02635 -31.75536 -30.67449 -30.00456 -27.48249 -25.86429 -24.84713 -24.17904 -23.50973 -22.47457 -21.64273 -20.86609 -20.67520 -20.13334 -18.31321 -17.50184 -17.21111 -17.01550 -16.56206 -15.88078 -15.48187 -15.17556 -14.79229 -14.69064 -14.42734 -14.41207 -14.30610 -13.95041 -13.90656 -13.66759 -13.42451 -13.18377 -12.99869 -12.95237 -12.64416 -12.44093 -12.24578 -11.80479 -11.65819 -11.50434 -11.44936 -11.31539 -11.26092 -11.02178 -10.83999 -10.80666 -10.73733 -10.45799 -10.33618 -10.03504 -9.98732 -9.70198 -9.67447 -9.62911 -9.29815 -8.86302 -6.91433 -5.76140 -3.04632 0.42964 0.59287 2.33951 2.86030 3.28415 3.44075 3.48078 3.49408 3.53637 3.74825 3.92685 3.99133 4.10477 4.25512 4.44551 4.52184 4.63080 4.72528 4.76997 4.84121 4.88469 4.92439 4.93838 5.04252 5.06717 5.20940 5.26149 5.35289 5.36514 5.40523 5.51545 5.53221 5.58480 5.63003 5.65561 5.74708 5.75987 5.85425 5.91154 5.96845 6.06047 6.18377 6.27615 6.33568 6.36605 6.43974 6.52968 6.87521 6.91499 7.22900 7.64031 7.69585 7.95183 8.43224 9.53873 10.12990 10.47540 11.46852 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.010434 B = 0.001868 C = 0.001700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2682.940694 B =14986.321839 C =16466.542035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.140 3.860 3 H 0.089 0.911 4 C -0.127 4.127 5 C -0.114 4.114 6 C -0.126 4.126 7 C 0.152 3.848 8 N -0.735 5.735 9 C -0.240 4.240 10 H 0.069 0.931 11 C -0.016 4.016 12 N -0.935 5.935 13 Si 0.908 3.092 14 H -0.286 1.286 15 H -0.291 1.291 16 H -0.286 1.286 17 N -0.721 5.721 18 C 0.521 3.479 19 O -0.537 6.537 20 C -0.111 4.111 21 H 0.105 0.895 22 C -0.098 4.098 23 C -0.075 4.075 24 C 0.183 3.817 25 N -0.521 5.521 26 C 0.291 3.709 27 N -0.522 5.522 28 C 0.153 3.847 29 C -0.181 4.181 30 C -0.062 4.062 31 H 0.066 0.934 32 H 0.058 0.942 33 H 0.056 0.944 34 H 0.068 0.932 35 H 0.079 0.921 36 H 0.061 0.939 37 H 0.060 0.940 38 H 0.060 0.940 39 H 0.061 0.939 40 H 0.016 0.984 41 H 0.015 0.985 42 H 0.383 0.617 43 H 0.255 0.745 44 H 0.400 0.600 45 H 0.074 0.926 46 H 0.090 0.910 47 H 0.096 0.904 48 H 0.095 0.905 49 H 0.196 0.804 50 H 0.169 0.831 51 H 0.088 0.912 52 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.858 3.078 -25.452 30.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.036 3.964 3 H 0.107 0.893 4 C -0.165 4.165 5 C -0.152 4.152 6 C -0.164 4.164 7 C 0.025 3.975 8 N -0.379 5.379 9 C -0.371 4.371 10 H 0.087 0.913 11 C -0.212 4.212 12 N -0.584 5.584 13 Si 0.739 3.261 14 H -0.213 1.213 15 H -0.217 1.217 16 H -0.213 1.213 17 N -0.372 5.372 18 C 0.307 3.693 19 O -0.413 6.413 20 C -0.133 4.133 21 H 0.123 0.877 22 C -0.137 4.137 23 C -0.113 4.113 24 C 0.039 3.961 25 N -0.235 5.235 26 C 0.003 3.997 27 N -0.236 5.236 28 C -0.015 4.015 29 C -0.185 4.185 30 C -0.100 4.100 31 H 0.085 0.915 32 H 0.077 0.923 33 H 0.075 0.925 34 H 0.087 0.913 35 H 0.098 0.902 36 H 0.080 0.920 37 H 0.078 0.922 38 H 0.079 0.921 39 H 0.080 0.920 40 H 0.034 0.966 41 H 0.033 0.967 42 H 0.216 0.784 43 H 0.065 0.935 44 H 0.235 0.765 45 H 0.093 0.907 46 H 0.108 0.892 47 H 0.114 0.886 48 H 0.113 0.887 49 H 0.213 0.787 50 H 0.186 0.814 51 H 0.106 0.894 52 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -16.670 3.550 -26.389 31.414 hybrid contribution 0.771 -0.544 1.262 1.576 sum -15.899 3.006 -25.127 29.886 Atomic orbital electron populations 1.22170 0.95372 1.02051 1.02492 1.21060 0.93726 0.97762 0.83887 0.89312 1.21945 0.96885 1.00919 0.96758 1.21518 0.93937 1.01103 0.98617 1.21726 0.97265 1.00256 0.97116 1.20648 0.90997 0.95319 0.90558 1.42379 1.05326 1.64970 1.25205 1.19204 0.83923 1.28534 1.05432 0.91293 1.24754 0.97746 1.00963 0.97703 1.69646 1.32877 1.40707 1.15130 0.86252 0.85096 0.77494 0.77265 1.21251 1.21659 1.21282 1.46157 1.67216 1.14141 1.09733 1.20394 0.77403 0.87217 0.84292 1.90712 1.49710 1.15894 1.85003 1.21406 1.01178 0.96748 0.93935 0.87681 1.21424 1.02189 0.97882 0.92176 1.20505 1.00303 0.90416 1.00064 1.21407 0.90726 0.95869 0.88145 1.68421 1.23287 1.12358 1.19453 1.24939 0.88947 0.87104 0.98719 1.68435 1.14775 1.36523 1.03844 1.23309 0.93777 0.91462 0.92908 1.21064 1.01298 0.97385 0.98714 1.20272 0.99842 0.97143 0.92793 0.91515 0.92325 0.92489 0.91348 0.90203 0.91989 0.92174 0.92141 0.92049 0.96591 0.96684 0.78350 0.93482 0.76507 0.90683 0.89158 0.88568 0.88731 0.78747 0.81372 0.89367 0.89337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.24 9.48 37.16 0.35 -0.89 16 2 C 0.14 1.18 2.57 -67.93 -0.17 1.01 16 3 H 0.09 0.93 7.58 -51.93 -0.39 0.54 16 4 C -0.13 -1.12 4.75 -26.72 -0.13 -1.24 16 5 C -0.11 -1.30 5.10 -26.73 -0.14 -1.44 16 6 C -0.13 -1.92 5.33 -26.73 -0.14 -2.06 16 7 C 0.15 3.08 6.26 -4.04 -0.03 3.05 16 8 N -0.73 -19.01 5.60 -59.90 -0.34 -19.34 16 9 C -0.24 -6.85 9.99 -15.06 -0.15 -7.00 16 10 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 11 C -0.02 -0.46 5.50 -17.43 -0.10 -0.56 16 12 N -0.93 -28.54 13.06 55.49 0.72 -27.81 16 13 Si 0.91 22.60 29.55 -169.99 -5.02 17.57 16 14 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 15 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 16 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 17 N -0.72 -5.29 4.45 -53.81 -0.24 -5.53 16 18 C 0.52 4.52 7.09 -10.99 -0.08 4.44 16 19 O -0.54 -6.70 15.52 5.56 0.09 -6.61 16 20 C -0.11 -0.69 2.55 -91.69 -0.23 -0.92 16 21 H 0.11 0.58 8.10 -51.93 -0.42 0.16 16 22 C -0.10 -0.64 4.70 -26.67 -0.13 -0.77 16 23 C -0.08 -0.47 5.95 -28.11 -0.17 -0.64 16 24 C 0.18 1.43 6.62 -82.43 -0.55 0.89 16 25 N -0.52 -4.68 10.32 -11.00 -0.11 -4.80 16 26 C 0.29 2.34 12.29 -92.30 -1.13 1.21 16 27 N -0.52 -4.48 10.44 -14.54 -0.15 -4.64 16 28 C 0.15 1.04 10.94 -17.11 -0.19 0.86 16 29 C -0.18 -1.20 5.73 -104.68 -0.60 -1.80 16 30 C -0.06 -0.30 4.89 -28.15 -0.14 -0.44 16 31 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 33 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 35 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.06 0.66 7.75 -51.93 -0.40 0.26 16 38 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 39 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 40 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 41 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16 42 H 0.38 10.33 7.67 -40.82 -0.31 10.01 16 43 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 44 H 0.40 2.15 8.30 -40.82 -0.34 1.81 16 45 H 0.07 0.53 8.10 -51.93 -0.42 0.11 16 46 H 0.09 0.66 7.82 -51.93 -0.41 0.25 16 47 H 0.10 0.57 8.14 -51.93 -0.42 0.14 16 48 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 49 H 0.20 0.99 8.06 -52.48 -0.42 0.56 16 50 H 0.17 0.67 8.06 -52.49 -0.42 0.25 16 51 H 0.09 0.27 7.89 -51.93 -0.41 -0.13 16 52 H 0.09 0.43 8.11 -51.93 -0.42 0.01 16 LS Contribution 421.29 15.07 6.35 6.35 Total: -1.00 -35.28 421.29 -11.40 -46.68 By element: Atomic # 1 Polarization: 13.42 SS G_CDS: -8.99 Total: 4.43 kcal Atomic # 6 Polarization: -2.59 SS G_CDS: -3.71 Total: -6.30 kcal Atomic # 7 Polarization: -62.00 SS G_CDS: -0.12 Total: -62.12 kcal Atomic # 8 Polarization: -6.70 SS G_CDS: 0.09 Total: -6.61 kcal Atomic # 14 Polarization: 22.60 SS G_CDS: -5.02 Total: 17.57 kcal Total LS contribution 6.35 Total: 6.35 kcal Total: -35.28 -11.40 -46.68 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001171217562.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.049 kcal (2) G-P(sol) polarization free energy of solvation -35.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.682 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds