Wall clock time and date at job start Wed Apr 1 2020 04:42:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08995 * 109.47385 * 2 1 4 4 C 1.53006 * 109.46766 * 119.99970 * 2 1 3 5 5 C 1.53008 * 109.46804 * 185.00132 * 4 2 1 6 6 C 1.52996 * 109.46809 * 179.97438 * 5 4 2 7 7 C 1.52998 * 109.46929 * 180.02562 * 6 5 4 8 8 N 1.46506 * 109.47233 * 180.02562 * 7 6 5 9 9 C 1.36931 * 119.99939 * 179.97438 * 8 7 6 10 10 H 1.08000 * 120.00644 * 359.97438 * 9 8 7 11 11 C 1.38815 * 119.99715 * 179.97438 * 9 8 7 12 12 N 1.31611 * 120.00107 * 0.02562 * 11 9 8 13 13 Si 1.86805 * 119.99746 * 179.72150 * 11 9 8 14 14 H 1.48506 * 109.46826 * 60.00664 * 13 11 9 15 15 H 1.48497 * 109.47051 * 180.02562 * 13 11 9 16 16 H 1.48499 * 109.47422 * 300.00472 * 13 11 9 17 17 N 1.46502 * 109.47307 * 239.99844 * 2 1 3 18 18 C 1.34775 * 119.99842 * 84.99882 * 17 2 1 19 19 O 1.21278 * 120.00009 * 0.02562 * 18 17 2 20 20 C 1.50701 * 119.99753 * 179.97438 * 18 17 2 21 21 H 1.09000 * 109.63864 * 300.40669 * 20 18 17 22 22 C 1.53314 * 109.63581 * 180.02562 * 20 18 17 23 23 C 1.52807 * 108.51746 * 170.52098 * 22 20 18 24 24 C 1.50434 * 110.45326 * 51.03590 * 23 22 20 25 25 N 1.32891 * 118.53732 * 162.33167 * 24 23 22 26 26 C 1.31605 * 121.06108 * 179.77478 * 25 24 23 27 27 N 1.31811 * 121.67300 * 359.95670 * 26 25 24 28 28 C 1.32193 * 120.64315 * 0.12634 * 27 26 25 29 29 C 1.37774 * 122.57736 * 342.27395 * 24 23 22 30 30 C 1.50330 * 122.80337 * 0.65338 * 29 24 23 31 31 H 1.08999 * 109.47184 * 300.00177 * 1 2 3 32 32 H 1.09002 * 109.47039 * 60.00141 * 1 2 3 33 33 H 1.09003 * 109.47201 * 179.97438 * 1 2 3 34 34 H 1.08996 * 109.46952 * 65.00231 * 4 2 1 35 35 H 1.09002 * 109.47088 * 304.99668 * 4 2 1 36 36 H 1.09000 * 109.47043 * 59.99847 * 5 4 2 37 37 H 1.09002 * 109.46920 * 299.99640 * 5 4 2 38 38 H 1.09000 * 109.47441 * 60.00093 * 6 5 4 39 39 H 1.08994 * 109.47235 * 299.99823 * 6 5 4 40 40 H 1.09001 * 109.47671 * 60.00109 * 7 6 5 41 41 H 1.09006 * 109.47297 * 299.99829 * 7 6 5 42 42 H 0.97000 * 119.99307 * 359.97438 * 8 7 6 43 43 H 0.97000 * 120.00330 * 179.97438 * 12 11 9 44 44 H 0.97008 * 119.99638 * 265.00529 * 17 2 1 45 45 H 1.08998 * 109.62825 * 290.23063 * 22 20 18 46 46 H 1.09000 * 109.62706 * 50.81158 * 22 20 18 47 47 H 1.08999 * 109.30314 * 171.33577 * 23 22 20 48 48 H 1.09002 * 109.30589 * 290.92735 * 23 22 20 49 49 H 1.08004 * 119.16439 * 179.97438 * 26 25 24 50 50 H 1.07995 * 120.36441 * 180.02562 * 28 27 26 51 51 H 1.08998 * 109.31431 * 222.11770 * 30 29 24 52 52 H 1.09004 * 109.30498 * 102.70993 * 30 29 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7213 1.2493 5 6 3.5648 -0.6133 1.3138 6 6 4.0746 -1.3340 2.5634 7 6 5.5994 -1.2255 2.6282 8 7 6.0877 -1.9161 3.8244 9 6 7.4297 -1.9524 4.0941 10 1 8.1283 -1.4723 3.4249 11 6 7.8923 -2.6063 5.2278 12 7 7.0412 -3.1918 6.0432 13 14 9.7237 -2.6626 5.5917 14 1 10.2418 -1.2786 5.7393 15 1 9.9554 -3.4152 6.8506 16 1 10.4300 -3.3389 4.4740 17 7 2.0183 -0.6906 -1.1962 18 6 2.1470 -0.0183 -2.3571 19 8 1.8590 1.1585 -2.4115 20 6 2.6500 -0.7286 -3.5874 21 1 3.6465 -1.1278 -3.3983 22 6 2.7035 0.2534 -4.7635 23 6 3.4332 -0.4200 -5.9251 24 6 2.8398 -1.7738 -6.2046 25 7 3.0922 -2.3480 -7.3761 26 6 2.6022 -3.5333 -7.6710 27 7 1.8449 -4.1997 -6.8225 28 6 1.5502 -3.6904 -5.6388 29 6 2.0482 -2.4391 -5.2941 30 6 1.6961 -1.8665 -3.9495 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3634 -1.0277 -0.0005 34 1 1.7515 -1.7715 1.2056 35 1 1.6053 -0.2617 2.1370 36 1 3.8531 0.4370 1.3574 37 1 3.9994 -1.0729 0.4261 38 1 3.7863 -2.3843 2.5202 39 1 3.6400 -0.8741 3.4508 40 1 5.8875 -0.1751 2.6717 41 1 6.0345 -1.6851 1.7407 42 1 5.4603 -2.3476 4.4253 43 1 7.3644 -3.6491 6.8352 44 1 2.2490 -1.6319 -1.1525 45 1 1.6903 0.5140 -5.0693 46 1 3.2418 1.1530 -4.4652 47 1 3.3452 0.2028 -6.8153 48 1 4.4864 -0.5369 -5.6698 49 1 2.8265 -3.9713 -8.6324 50 1 0.9297 -4.2405 -4.9469 51 1 1.7663 -2.6496 -3.1946 52 1 0.6749 -1.4861 -3.9760 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001171217562.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:42:05 Heat of formation + Delta-G solvation = -36.250617 kcal Electronic energy + Delta-G solvation = -29466.099605 eV Core-core repulsion = 25463.399543 eV Total energy + Delta-G solvation = -4002.700063 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -42.38547 -41.00589 -38.34671 -37.52548 -36.74829 -35.11280 -34.73239 -33.05646 -32.44979 -31.91438 -30.73537 -28.79373 -26.40684 -25.92773 -25.30947 -23.99731 -23.74663 -22.54275 -22.00218 -21.53209 -20.70925 -19.12524 -18.87886 -18.06082 -17.74835 -17.26957 -16.68501 -16.49853 -16.26757 -16.02558 -15.44566 -15.31964 -15.29815 -14.98750 -14.89615 -14.85935 -14.55340 -14.41380 -14.17742 -14.09725 -13.84684 -13.30412 -13.11438 -13.02119 -12.86386 -12.83970 -12.80000 -12.43081 -12.26015 -12.19654 -12.15898 -11.95513 -11.87492 -11.84770 -11.76612 -11.46153 -11.40377 -11.35559 -10.93018 -10.70655 -10.20812 -10.17487 -9.99951 -9.01427 -7.96622 -5.25762 -0.09218 0.05558 1.46423 1.49691 1.55988 1.67555 2.24343 2.55219 2.74283 3.02907 3.27928 3.36466 3.44638 3.48626 3.61092 3.65120 3.78486 4.00652 4.07741 4.08897 4.16025 4.24510 4.28604 4.36378 4.39879 4.45116 4.47131 4.57439 4.63398 4.66495 4.67904 4.81753 4.83282 4.87931 4.90427 4.97063 5.02333 5.05040 5.05990 5.10669 5.17554 5.23569 5.30080 5.36970 5.46244 5.47326 5.47666 5.55140 5.65690 6.00028 6.26236 6.63467 7.09676 7.31937 7.32664 8.09119 8.32201 9.26692 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.010434 B = 0.001868 C = 0.001700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2682.940694 B =14986.321839 C =16466.542035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.144 3.856 3 H 0.066 0.934 4 C -0.117 4.117 5 C -0.104 4.104 6 C -0.113 4.113 7 C 0.147 3.853 8 N -0.749 5.749 9 C -0.251 4.251 10 H 0.073 0.927 11 C -0.077 4.077 12 N -0.969 5.969 13 Si 0.975 3.025 14 H -0.278 1.278 15 H -0.293 1.293 16 H -0.277 1.277 17 N -0.711 5.711 18 C 0.522 3.478 19 O -0.579 6.579 20 C -0.105 4.105 21 H 0.117 0.883 22 C -0.093 4.093 23 C -0.069 4.069 24 C 0.166 3.834 25 N -0.543 5.543 26 C 0.279 3.721 27 N -0.542 5.542 28 C 0.148 3.852 29 C -0.178 4.178 30 C -0.055 4.055 31 H 0.071 0.929 32 H 0.044 0.956 33 H 0.072 0.928 34 H 0.085 0.915 35 H 0.082 0.918 36 H 0.053 0.947 37 H 0.068 0.932 38 H 0.063 0.937 39 H 0.055 0.945 40 H 0.012 0.988 41 H 0.019 0.981 42 H 0.374 0.626 43 H 0.252 0.748 44 H 0.413 0.587 45 H 0.066 0.934 46 H 0.080 0.920 47 H 0.096 0.904 48 H 0.100 0.900 49 H 0.215 0.785 50 H 0.197 0.803 51 H 0.114 0.886 52 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.156 2.264 -25.827 31.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.039 3.961 3 H 0.084 0.916 4 C -0.155 4.155 5 C -0.143 4.143 6 C -0.151 4.151 7 C 0.021 3.979 8 N -0.392 5.392 9 C -0.383 4.383 10 H 0.091 0.909 11 C -0.269 4.269 12 N -0.619 5.619 13 Si 0.804 3.196 14 H -0.204 1.204 15 H -0.219 1.219 16 H -0.203 1.203 17 N -0.363 5.363 18 C 0.309 3.691 19 O -0.459 6.459 20 C -0.126 4.126 21 H 0.134 0.866 22 C -0.132 4.132 23 C -0.106 4.106 24 C 0.022 3.978 25 N -0.258 5.258 26 C -0.008 4.008 27 N -0.256 5.256 28 C -0.019 4.019 29 C -0.182 4.182 30 C -0.094 4.094 31 H 0.090 0.910 32 H 0.063 0.937 33 H 0.091 0.909 34 H 0.104 0.896 35 H 0.101 0.899 36 H 0.072 0.928 37 H 0.087 0.913 38 H 0.082 0.918 39 H 0.074 0.926 40 H 0.030 0.970 41 H 0.037 0.963 42 H 0.206 0.794 43 H 0.061 0.939 44 H 0.250 0.750 45 H 0.085 0.915 46 H 0.098 0.902 47 H 0.114 0.886 48 H 0.118 0.882 49 H 0.231 0.769 50 H 0.214 0.786 51 H 0.132 0.868 52 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -16.970 2.735 -26.794 31.833 hybrid contribution 0.843 -0.249 1.345 1.607 sum -16.127 2.486 -25.449 30.231 Atomic orbital electron populations 1.22104 0.94401 1.02908 1.02065 1.20923 0.94390 0.96647 0.84107 0.91610 1.21844 0.94598 1.02055 0.96975 1.21424 0.95903 1.00045 0.96879 1.21604 0.93632 1.00991 0.98830 1.20871 0.94355 0.94198 0.88453 1.42628 1.04488 1.65384 1.26689 1.19616 0.85381 1.27848 1.05410 0.90892 1.25614 1.02257 1.01231 0.97832 1.69801 1.34755 1.41831 1.15551 0.85187 0.79839 0.77655 0.76938 1.20415 1.21914 1.20285 1.46085 1.66481 1.14690 1.09064 1.20761 0.76597 0.86711 0.85045 1.90701 1.51654 1.17841 1.85669 1.21370 1.01991 0.96781 0.92437 0.86550 1.21335 1.01579 0.97725 0.92539 1.20456 1.00424 0.89877 0.99872 1.21695 0.91342 0.96415 0.88350 1.68430 1.24152 1.12967 1.20228 1.25365 0.88856 0.87025 0.99558 1.68484 1.15351 1.37075 1.04701 1.23817 0.93584 0.91636 0.92821 1.21199 1.00668 0.97251 0.99081 1.20287 0.99411 0.97159 0.92496 0.91036 0.93715 0.90925 0.89629 0.89933 0.92796 0.91301 0.91799 0.92622 0.97032 0.96348 0.79418 0.93896 0.74956 0.91481 0.90167 0.88600 0.88191 0.76885 0.78605 0.86773 0.88997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.08 9.48 71.98 0.68 -1.40 16 2 C 0.14 2.18 2.57 44.99 0.12 2.29 16 3 H 0.07 1.34 7.58 -2.39 -0.02 1.32 16 4 C -0.12 -1.75 4.75 30.60 0.15 -1.61 16 5 C -0.10 -2.18 5.10 30.60 0.16 -2.02 16 6 C -0.11 -3.28 5.33 30.59 0.16 -3.12 16 7 C 0.15 5.84 6.26 86.38 0.54 6.39 16 8 N -0.75 -38.69 5.60 -343.44 -1.92 -40.62 16 9 C -0.25 -14.26 9.99 84.04 0.84 -13.42 16 10 H 0.07 3.99 7.83 -2.91 -0.02 3.97 16 11 C -0.08 -4.47 5.50 84.86 0.47 -4.01 16 12 N -0.97 -59.48 13.06 21.65 0.28 -59.20 16 13 Si 0.98 46.24 29.55 68.60 2.03 48.26 16 14 H -0.28 -12.71 7.11 99.48 0.71 -12.01 16 15 H -0.29 -13.89 7.11 99.48 0.71 -13.18 16 16 H -0.28 -12.59 7.11 99.48 0.71 -11.89 16 17 N -0.71 -8.84 4.45 -442.54 -1.97 -10.81 16 18 C 0.52 8.35 7.09 87.66 0.62 8.97 16 19 O -0.58 -14.36 15.52 -3.02 -0.05 -14.41 16 20 C -0.10 -1.11 2.55 -11.49 -0.03 -1.14 16 21 H 0.12 1.02 8.10 -2.39 -0.02 1.00 16 22 C -0.09 -1.18 4.70 30.64 0.14 -1.04 16 23 C -0.07 -0.82 5.95 29.70 0.18 -0.65 16 24 C 0.17 2.46 6.62 42.20 0.28 2.74 16 25 N -0.54 -9.53 10.32 -188.72 -1.95 -11.48 16 26 C 0.28 4.34 12.29 180.94 2.22 6.56 16 27 N -0.54 -8.67 10.44 -199.93 -2.09 -10.76 16 28 C 0.15 1.73 10.94 84.83 0.93 2.66 16 29 C -0.18 -2.05 5.73 -19.90 -0.11 -2.16 16 30 C -0.06 -0.40 4.89 29.68 0.15 -0.25 16 31 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 32 H 0.04 0.73 8.14 -2.39 -0.02 0.71 16 33 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 34 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 35 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 36 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 37 H 0.07 1.33 7.75 -2.39 -0.02 1.31 16 38 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 39 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 40 H 0.01 0.47 8.14 -2.39 -0.02 0.46 16 41 H 0.02 0.73 8.14 -2.38 -0.02 0.71 16 42 H 0.37 20.31 7.67 -92.71 -0.71 19.60 16 43 H 0.25 14.97 8.31 -92.71 -0.77 14.20 16 44 H 0.41 3.03 8.30 -92.70 -0.77 2.26 16 45 H 0.07 0.95 8.10 -2.39 -0.02 0.93 16 46 H 0.08 1.18 7.82 -2.39 -0.02 1.16 16 47 H 0.10 1.13 8.14 -2.39 -0.02 1.12 16 48 H 0.10 1.07 8.14 -2.39 -0.02 1.05 16 49 H 0.21 2.06 8.06 -2.91 -0.02 2.04 16 50 H 0.20 0.97 8.06 -2.91 -0.02 0.95 16 51 H 0.11 0.26 7.89 -2.39 -0.02 0.24 16 52 H 0.09 0.67 8.11 -2.38 -0.02 0.65 16 Total: -1.00 -76.33 421.29 1.26 -75.07 By element: Atomic # 1 Polarization: 25.69 SS G_CDS: -0.56 Total: 25.13 kcal Atomic # 6 Polarization: -8.68 SS G_CDS: 7.48 Total: -1.20 kcal Atomic # 7 Polarization: -125.22 SS G_CDS: -7.64 Total: -132.86 kcal Atomic # 8 Polarization: -14.36 SS G_CDS: -0.05 Total: -14.41 kcal Atomic # 14 Polarization: 46.24 SS G_CDS: 2.03 Total: 48.26 kcal Total: -76.33 1.26 -75.07 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001171217562.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.822 kcal (2) G-P(sol) polarization free energy of solvation -76.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.073 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds