Wall clock time and date at job start Wed Apr 1 2020 04:44:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47368 * 2 1 4 4 C 1.53002 * 109.47568 * 239.99187 * 2 1 3 5 5 C 1.52997 * 109.47208 * 174.99490 * 4 2 1 6 6 C 1.50700 * 109.47238 * 180.02562 * 5 4 2 7 7 H 1.07998 * 119.99403 * 359.97438 * 6 5 4 8 8 C 1.37868 * 120.00260 * 180.02562 * 6 5 4 9 9 N 1.31522 * 120.00195 * 359.97438 * 8 6 5 10 10 Si 1.86802 * 120.00303 * 179.97438 * 8 6 5 11 11 H 1.48501 * 109.46938 * 59.99623 * 10 8 6 12 12 H 1.48495 * 109.47100 * 179.97438 * 10 8 6 13 13 H 1.48495 * 109.46948 * 299.99756 * 10 8 6 14 14 N 1.46502 * 109.46595 * 119.99458 * 2 1 3 15 15 C 1.37598 * 120.00182 * 54.13960 * 14 2 1 16 16 N 1.30356 * 120.00133 * 5.47142 * 15 14 2 17 17 N 1.37521 * 120.00679 * 185.47661 * 15 14 2 18 18 C 1.40152 * 120.00097 * 234.13103 * 14 2 1 19 19 C 1.38845 * 120.00001 * 246.11904 * 18 14 2 20 20 C 1.38073 * 120.00114 * 179.97438 * 19 18 14 21 21 C 1.38873 * 120.00296 * 0.02562 * 20 19 18 22 22 N 1.39939 * 120.00971 * 179.97438 * 21 20 19 23 23 C 1.47009 * 110.99694 * 303.63572 * 22 21 20 24 24 C 1.53104 * 109.25792 * 177.60565 * 23 22 21 25 25 O 1.43010 * 109.25712 * 56.84756 * 24 23 22 26 26 C 1.43018 * 113.74103 * 301.33194 * 25 24 23 27 27 C 1.47010 * 111.00192 * 180.02562 * 22 21 20 28 28 C 1.38880 * 119.99098 * 359.97438 * 21 20 19 29 29 C 1.38074 * 119.99245 * 0.02562 * 28 21 20 30 30 H 1.08996 * 109.47278 * 173.42422 * 1 2 3 31 31 H 1.08996 * 109.47671 * 293.43235 * 1 2 3 32 32 H 1.09006 * 109.46522 * 53.42597 * 1 2 3 33 33 H 1.08994 * 109.47153 * 294.99772 * 4 2 1 34 34 H 1.09004 * 109.46406 * 55.00080 * 4 2 1 35 35 H 1.09008 * 109.47255 * 300.00255 * 5 4 2 36 36 H 1.09000 * 109.47255 * 60.00244 * 5 4 2 37 37 H 0.96997 * 120.00456 * 179.97438 * 9 8 6 38 38 H 0.97000 * 119.99623 * 5.69261 * 16 15 14 39 39 H 0.97003 * 119.99365 * 6.53930 * 17 15 14 40 40 H 0.96996 * 120.00298 * 186.54612 * 17 15 14 41 41 H 1.07999 * 120.00002 * 0.26336 * 19 18 14 42 42 H 1.08012 * 120.00209 * 179.97438 * 20 19 18 43 43 H 1.08996 * 109.51348 * 297.54079 * 23 22 21 44 44 H 1.09005 * 109.51209 * 57.67292 * 23 22 21 45 45 H 1.09001 * 109.50417 * 296.91288 * 24 23 22 46 46 H 1.08999 * 109.54402 * 176.80819 * 24 23 22 47 47 H 1.09007 * 109.50655 * 298.73522 * 26 25 24 48 48 H 1.08992 * 109.54548 * 178.62769 * 26 25 24 49 49 H 1.09005 * 109.50616 * 302.32574 * 27 22 21 50 50 H 1.09001 * 109.50822 * 62.45396 * 27 22 21 51 51 H 1.07994 * 120.00694 * 179.97438 * 28 21 20 52 52 H 1.08005 * 119.99472 * 180.02562 * 29 28 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7214 -1.2491 5 6 3.5649 -0.6133 -1.3136 6 6 4.0673 -1.3233 -2.5442 7 1 3.3688 -1.8040 -3.2132 8 6 5.4185 -1.3602 -2.8155 9 7 6.2691 -0.7753 -2.0006 10 14 6.0414 -2.2409 -4.3406 11 1 5.4495 -1.6148 -5.5501 12 1 7.5213 -2.1359 -4.4032 13 1 5.6483 -3.6717 -4.2811 14 7 2.0182 -0.6905 1.1963 15 6 1.5893 -1.9675 1.4768 16 7 0.8338 -2.6031 0.6256 17 7 1.9576 -2.5734 2.6551 18 6 2.9223 -0.0505 2.0550 19 6 4.2161 -0.5363 2.1879 20 6 5.1070 0.0945 3.0334 21 6 4.7087 1.2146 3.7514 22 7 5.6113 1.8537 4.6088 23 6 6.1455 0.9149 5.6060 24 6 7.1706 1.6389 6.4829 25 8 6.5529 2.7780 7.0880 26 6 6.0220 3.7136 6.1456 27 6 4.9852 3.0102 5.2657 28 6 3.4145 1.7004 3.6183 29 6 2.5239 1.0694 2.7727 30 1 -0.3633 -1.0209 -0.1177 31 1 -0.3634 0.4086 0.9428 32 1 -0.3632 0.6124 -0.8254 33 1 1.7519 -1.7716 -1.2053 34 1 1.6055 -0.2619 -2.1369 35 1 3.8532 0.4370 -1.3574 36 1 3.9996 -1.0727 -0.4258 37 1 7.2198 -0.8015 -2.1912 38 1 0.6416 -2.2099 -0.2401 39 1 2.4391 -2.0694 3.3297 40 1 1.7361 -3.5047 2.8115 41 1 4.5272 -1.4048 1.6264 42 1 6.1134 -0.2836 3.1371 43 1 5.3318 0.5432 6.2287 44 1 6.6268 0.0791 5.0980 45 1 8.0103 1.9637 5.8685 46 1 7.5280 0.9630 7.2598 47 1 6.8284 4.0988 5.5214 48 1 5.5482 4.5383 6.6779 49 1 4.6192 3.7045 4.5092 50 1 4.1530 2.6717 5.8830 51 1 3.1044 2.5711 4.1768 52 1 1.5175 1.4474 2.6689 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172489183.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:44:53 Heat of formation + Delta-G solvation = 42.231359 kcal Electronic energy + Delta-G solvation = -31621.065227 eV Core-core repulsion = 27621.768398 eV Total energy + Delta-G solvation = -3999.296829 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -40.71150 -39.73287 -38.06542 -35.61091 -34.96326 -33.02332 -31.95589 -31.92038 -30.69072 -30.53872 -29.32350 -28.65398 -26.06230 -25.12519 -24.79204 -22.48887 -22.11366 -21.72271 -20.80676 -20.47621 -19.64867 -18.00756 -17.36045 -16.65084 -16.47791 -16.19673 -15.74538 -15.53480 -15.24079 -15.05075 -14.91442 -14.60062 -14.37114 -14.14286 -14.09677 -13.56656 -13.31136 -13.11985 -12.86356 -12.60881 -12.47334 -12.28332 -12.18577 -11.90124 -11.75950 -11.66154 -11.51906 -11.28399 -10.97361 -10.91877 -10.88834 -10.61359 -10.51465 -10.19203 -9.89961 -9.63729 -9.34215 -9.08808 -8.85091 -8.71860 -8.50902 -8.29221 -7.91688 -7.29046 -5.96220 -3.98020 1.36314 1.51443 3.16624 3.35019 3.35886 3.38890 3.42220 3.50674 3.56082 3.86679 4.30948 4.48544 4.51668 4.60569 4.71321 4.81256 4.96290 5.00206 5.06145 5.21172 5.26617 5.30569 5.39188 5.42331 5.44371 5.46025 5.51678 5.57017 5.61949 5.64925 5.69848 5.92823 6.03129 6.11589 6.14596 6.21077 6.31314 6.38307 6.51210 6.68273 6.70801 6.77370 6.80701 6.87253 7.04469 7.13559 7.24292 7.33380 7.70779 7.86553 7.92860 8.03884 8.31950 8.46488 9.08086 9.26464 9.65367 11.14292 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.009773 B = 0.003283 C = 0.002719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2864.459778 B = 8526.686909 C =10294.743857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.155 3.845 3 H 0.086 0.914 4 C -0.139 4.139 5 C 0.032 3.968 6 C -0.520 4.520 7 H 0.052 0.948 8 C 0.059 3.941 9 N -0.893 5.893 10 Si 0.888 3.112 11 H -0.278 1.278 12 H -0.288 1.288 13 H -0.277 1.277 14 N -0.593 5.593 15 C 0.649 3.351 16 N -0.838 5.838 17 N -0.853 5.853 18 C 0.130 3.870 19 C -0.082 4.082 20 C -0.119 4.119 21 C 0.097 3.903 22 N -0.486 5.486 23 C 0.020 3.980 24 C 0.062 3.938 25 O -0.386 6.386 26 C 0.062 3.938 27 C 0.014 3.986 28 C -0.161 4.161 29 C -0.104 4.104 30 H 0.073 0.927 31 H 0.052 0.948 32 H 0.065 0.935 33 H 0.064 0.936 34 H 0.060 0.940 35 H 0.009 0.991 36 H 0.022 0.978 37 H 0.259 0.741 38 H 0.351 0.649 39 H 0.397 0.603 40 H 0.411 0.589 41 H 0.134 0.866 42 H 0.126 0.874 43 H 0.051 0.949 44 H 0.095 0.905 45 H 0.062 0.938 46 H 0.101 0.899 47 H 0.062 0.938 48 H 0.100 0.900 49 H 0.093 0.907 50 H 0.054 0.946 51 H 0.124 0.876 52 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.540 7.011 19.169 20.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.052 3.948 3 H 0.104 0.896 4 C -0.178 4.178 5 C -0.005 4.005 6 C -0.558 4.558 7 H 0.070 0.930 8 C -0.142 4.142 9 N -0.532 5.532 10 Si 0.716 3.284 11 H -0.203 1.203 12 H -0.213 1.213 13 H -0.203 1.203 14 N -0.315 5.315 15 C 0.283 3.717 16 N -0.491 5.491 17 N -0.408 5.408 18 C 0.036 3.964 19 C -0.103 4.103 20 C -0.140 4.140 21 C 0.000 4.000 22 N -0.202 5.202 23 C -0.106 4.106 24 C -0.015 4.015 25 O -0.305 6.305 26 C -0.015 4.015 27 C -0.114 4.114 28 C -0.182 4.182 29 C -0.125 4.125 30 H 0.092 0.908 31 H 0.071 0.929 32 H 0.084 0.916 33 H 0.083 0.917 34 H 0.079 0.921 35 H 0.028 0.972 36 H 0.040 0.960 37 H 0.069 0.931 38 H 0.176 0.824 39 H 0.226 0.774 40 H 0.242 0.758 41 H 0.152 0.848 42 H 0.144 0.856 43 H 0.070 0.930 44 H 0.113 0.887 45 H 0.081 0.919 46 H 0.119 0.881 47 H 0.080 0.920 48 H 0.118 0.882 49 H 0.112 0.888 50 H 0.072 0.928 51 H 0.142 0.858 52 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -3.417 6.492 19.067 20.430 hybrid contribution 0.348 0.114 -1.110 1.169 sum -3.069 6.606 17.956 19.378 Atomic orbital electron populations 1.22475 0.95939 1.03557 1.01676 1.21255 0.92776 0.96565 0.84206 0.89619 1.22334 1.01327 0.99926 0.94233 1.19003 0.87785 0.96671 0.97081 1.21217 0.91942 1.34280 1.08365 0.92993 1.24974 0.97050 0.95611 0.96557 1.69959 1.02249 1.44082 1.36936 0.86722 0.77564 0.80344 0.83758 1.20321 1.21348 1.20304 1.45115 1.47366 1.13978 1.25066 1.18684 0.86165 0.79901 0.86976 1.69679 1.29249 1.39527 1.10637 1.41647 1.66455 1.15450 1.17213 1.17645 0.89646 0.95002 0.94065 1.21398 0.91453 1.00928 0.96525 1.20654 0.99704 0.95812 0.97784 1.18861 0.89938 0.94508 0.96687 1.59421 1.34125 1.08396 1.18271 1.22939 0.98779 0.95508 0.93370 1.22723 0.94441 0.87695 0.96662 1.87985 1.76258 1.33158 1.33050 1.22716 0.95990 0.91493 0.91286 1.22956 0.96918 0.93581 0.97899 1.21037 0.92238 1.02291 1.02617 1.21112 0.99325 0.96345 0.95745 0.90809 0.92914 0.91578 0.91724 0.92147 0.97231 0.96013 0.93134 0.82396 0.77362 0.75793 0.84792 0.85598 0.93027 0.88719 0.91930 0.88077 0.91994 0.88150 0.88831 0.92792 0.85798 0.86136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.54 8.90 37.16 0.33 -2.21 16 2 C 0.15 2.62 2.54 -67.93 -0.17 2.45 16 3 H 0.09 1.46 7.85 -51.93 -0.41 1.06 16 4 C -0.14 -2.88 4.42 -26.73 -0.12 -2.99 16 5 C 0.03 0.81 4.86 -27.88 -0.14 0.67 16 6 C -0.52 -14.87 9.11 -34.44 -0.31 -15.19 16 7 H 0.05 1.46 7.74 -52.49 -0.41 1.06 16 8 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 9 N -0.89 -26.69 13.29 55.43 0.74 -25.95 16 10 Si 0.89 22.01 29.54 -169.99 -5.02 16.99 16 11 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 12 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 13 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 14 N -0.59 -9.73 1.99 -107.89 -0.22 -9.95 16 15 C 0.65 10.93 7.93 -319.85 -2.54 8.40 16 16 N -0.84 -15.53 12.70 30.18 0.38 -15.15 16 17 N -0.85 -11.41 8.74 30.17 0.26 -11.15 16 18 C 0.13 2.00 4.17 -83.60 -0.35 1.65 16 19 C -0.08 -1.32 8.29 -39.42 -0.33 -1.65 16 20 C -0.12 -1.68 9.20 -39.41 -0.36 -2.05 16 21 C 0.10 1.23 5.64 -83.68 -0.47 0.76 16 22 N -0.49 -5.39 4.78 -170.74 -0.82 -6.21 16 23 C 0.02 0.19 5.41 -3.71 -0.02 0.17 16 24 C 0.06 0.52 7.01 37.21 0.26 0.78 16 25 O -0.39 -3.81 10.83 -35.23 -0.38 -4.19 16 26 C 0.06 0.51 7.01 37.21 0.26 0.77 16 27 C 0.01 0.13 4.33 -3.71 -0.02 0.11 16 28 C -0.16 -1.93 8.81 -39.40 -0.35 -2.28 16 29 C -0.10 -1.38 9.77 -39.41 -0.39 -1.76 16 30 H 0.07 1.13 5.18 -51.93 -0.27 0.86 16 31 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.06 1.40 5.32 -51.93 -0.28 1.12 16 34 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 35 H 0.01 0.26 8.14 -51.92 -0.42 -0.16 16 36 H 0.02 0.58 6.25 -51.93 -0.32 0.26 16 37 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 38 H 0.35 6.61 3.30 -40.82 -0.13 6.47 16 39 H 0.40 4.70 7.15 -40.82 -0.29 4.41 16 40 H 0.41 4.94 8.95 -40.82 -0.37 4.57 16 41 H 0.13 2.50 7.33 -52.49 -0.38 2.11 16 42 H 0.13 1.68 7.20 -52.48 -0.38 1.30 16 43 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 44 H 0.09 0.84 6.86 -51.93 -0.36 0.48 16 45 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 46 H 0.10 0.65 8.14 -51.93 -0.42 0.22 16 47 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 48 H 0.10 0.62 8.14 -51.93 -0.42 0.19 16 49 H 0.09 0.80 7.23 -51.93 -0.38 0.43 16 50 H 0.05 0.48 7.54 -51.93 -0.39 0.09 16 51 H 0.12 1.22 5.81 -52.49 -0.30 0.92 16 52 H 0.12 1.45 8.06 -52.48 -0.42 1.03 16 LS Contribution 399.36 15.07 6.02 6.02 Total: -1.00 -32.70 399.36 -11.86 -44.56 By element: Atomic # 1 Polarization: 23.81 SS G_CDS: -8.03 Total: 15.78 kcal Atomic # 6 Polarization: -5.96 SS G_CDS: -4.80 Total: -10.76 kcal Atomic # 7 Polarization: -68.76 SS G_CDS: 0.35 Total: -68.41 kcal Atomic # 8 Polarization: -3.81 SS G_CDS: -0.38 Total: -4.19 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -32.70 -11.86 -44.56 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172489183.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.791 kcal (2) G-P(sol) polarization free energy of solvation -32.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.560 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds