Wall clock time and date at job start Wed Apr 1 2020 04:43:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08992 * 109.47641 * 2 1 4 4 C 1.53004 * 109.47038 * 120.00415 * 2 1 3 5 5 C 1.52997 * 109.47162 * 183.60582 * 4 2 1 6 6 C 1.50704 * 109.46823 * 176.05648 * 5 4 2 7 7 H 1.07999 * 120.00365 * 359.97438 * 6 5 4 8 8 C 1.37882 * 119.99557 * 179.97438 * 6 5 4 9 9 N 1.31512 * 119.99611 * 179.97438 * 8 6 5 10 10 Si 1.86797 * 120.00315 * 0.02562 * 8 6 5 11 11 H 1.48505 * 109.46873 * 89.99686 * 10 8 6 12 12 H 1.48492 * 109.47023 * 209.99907 * 10 8 6 13 13 H 1.48499 * 109.46980 * 329.99864 * 10 8 6 14 14 N 1.46901 * 109.47086 * 239.99493 * 2 1 3 15 15 C 1.48661 * 110.99422 * 67.98305 * 14 2 1 16 16 C 1.54648 * 104.62777 * 201.48388 * 15 14 2 17 17 C 1.53261 * 104.67277 * 23.69906 * 16 15 14 18 18 C 1.53615 * 111.05587 * 238.97603 * 17 16 15 19 19 C 1.54707 * 101.50765 * 262.70563 * 18 17 16 20 20 N 1.46879 * 105.51695 * 335.46853 * 19 18 17 21 21 C 1.40766 * 124.37407 * 196.79806 * 20 19 18 22 22 C 1.40257 * 126.07771 * 0.02852 * 21 20 19 23 23 N 1.30829 * 108.33344 * 179.97438 * 22 21 20 24 24 N 1.40064 * 108.36984 * 0.02562 * 23 22 21 25 25 C 1.46505 * 126.05205 * 180.02562 * 24 23 22 26 26 C 1.35753 * 126.08442 * 179.71253 * 21 20 19 27 27 C 1.34756 * 111.26046 * 16.82701 * 20 19 18 28 28 O 1.21301 * 125.14094 * 178.73634 * 27 20 19 29 29 C 1.48802 * 111.00479 * 312.36514 * 14 2 1 30 30 H 1.09002 * 109.47185 * 67.86328 * 1 2 3 31 31 H 1.09000 * 109.47937 * 187.86364 * 1 2 3 32 32 H 1.09000 * 109.47457 * 307.86540 * 1 2 3 33 33 H 1.09002 * 109.46950 * 303.60341 * 4 2 1 34 34 H 1.09001 * 109.47463 * 63.60151 * 4 2 1 35 35 H 1.09004 * 109.47116 * 296.05211 * 5 4 2 36 36 H 1.08993 * 109.47266 * 56.05823 * 5 4 2 37 37 H 0.97006 * 120.00262 * 180.02562 * 9 8 6 38 38 H 1.08992 * 110.40243 * 82.69841 * 15 14 2 39 39 H 1.08997 * 110.40335 * 320.26793 * 15 14 2 40 40 H 1.08993 * 110.39409 * 264.90047 * 16 15 14 41 41 H 1.09000 * 110.39525 * 142.49317 * 16 15 14 42 42 H 1.08992 * 111.01938 * 144.64474 * 18 17 16 43 43 H 1.09005 * 111.01516 * 20.75531 * 18 17 16 44 44 H 1.09004 * 110.23613 * 216.46244 * 19 18 17 45 45 H 1.08993 * 110.23967 * 94.48323 * 19 18 17 46 46 H 1.08004 * 125.83243 * 359.96473 * 22 21 20 47 47 H 1.08992 * 109.47571 * 89.96859 * 25 24 23 48 48 H 1.09004 * 109.46410 * 209.96918 * 25 24 23 49 49 H 1.09000 * 109.47109 * 329.96138 * 25 24 23 50 50 H 1.08002 * 126.21620 * 0.04386 * 26 21 20 51 51 H 1.09002 * 110.45461 * 39.46443 * 29 14 2 52 52 H 1.09002 * 110.45568 * 276.90644 * 29 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7214 1.2492 5 6 3.5672 -0.6433 1.2954 6 6 4.0637 -1.2687 2.5736 7 1 3.3602 -1.6802 3.2822 8 6 5.4160 -1.3154 2.8382 9 7 5.8493 -1.8606 3.9538 10 14 6.6328 -0.6029 1.6129 11 1 6.8727 0.8282 1.9287 12 1 7.9135 -1.3497 1.6960 13 1 6.0791 -0.7209 0.2400 14 7 2.0196 -0.6926 -1.1994 15 6 1.7066 0.0838 -2.4279 16 6 1.7550 -0.9570 -3.5706 17 6 1.4934 -2.3013 -2.8826 18 6 2.6629 -3.2721 -3.1054 19 6 2.1443 -4.1120 -4.2966 20 7 0.6798 -4.0180 -4.2355 21 6 -0.2011 -4.8860 -4.9080 22 6 0.1663 -5.9617 -5.7297 23 7 -0.9244 -6.5311 -6.1743 24 7 -2.0265 -5.8406 -5.6541 25 6 -3.4359 -6.1530 -5.9037 26 6 -1.5572 -4.8345 -4.8719 27 6 0.2881 -2.9931 -3.4531 28 8 -0.8635 -2.6742 -3.2449 29 6 1.3149 -1.9889 -1.3918 30 1 -0.3634 0.3872 -0.9519 31 1 -0.3635 -1.0179 0.1406 32 1 -0.3634 0.6308 0.8113 33 1 1.6248 -0.2462 2.1381 34 1 1.7303 -1.7660 1.2175 35 1 3.9844 -1.1792 0.4428 36 1 3.8790 0.4004 1.2566 37 1 6.8007 -1.8932 4.1402 38 1 2.4554 0.8594 -2.5883 39 1 0.7118 0.5236 -2.3563 40 1 2.7372 -0.9569 -4.0432 41 1 0.9782 -0.7495 -4.3066 42 1 2.8248 -3.8972 -2.2273 43 1 3.5722 -2.7338 -3.3732 44 1 2.4601 -5.1501 -4.1919 45 1 2.5097 -3.6990 -5.2367 46 1 1.1769 -6.2675 -5.9567 47 1 -3.7914 -6.8554 -5.1499 48 1 -4.0252 -5.2374 -5.8539 49 1 -3.5396 -6.5984 -6.8931 50 1 -2.1543 -4.1210 -4.3234 51 1 0.2573 -1.8875 -1.1478 52 1 1.7745 -2.7666 -0.7818 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172494748.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:43:32 Heat of formation + Delta-G solvation = 62.367015 kcal Electronic energy + Delta-G solvation = -31402.088418 eV Core-core repulsion = 27403.664737 eV Total energy + Delta-G solvation = -3998.423681 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.88327 -40.90915 -38.61269 -36.70334 -35.05878 -33.50572 -32.77894 -31.68520 -30.08011 -29.29347 -28.57019 -28.17628 -26.98285 -25.42051 -24.21511 -22.82187 -22.22890 -21.40386 -20.56305 -20.46886 -19.24540 -18.87911 -17.81234 -16.61268 -16.35438 -16.34139 -16.17933 -15.56965 -15.25815 -14.76234 -14.59977 -14.26573 -14.15816 -14.05197 -13.83971 -13.52478 -13.34137 -13.21534 -12.98664 -12.80067 -12.65789 -12.61014 -12.44944 -12.38394 -12.08475 -11.48611 -11.46359 -11.31206 -11.21786 -11.14474 -11.02680 -10.79448 -10.61064 -10.42174 -10.40477 -9.84703 -9.78777 -9.74447 -9.63862 -9.41980 -8.99914 -8.42881 -8.05553 -7.88994 -5.93886 -3.90163 1.48973 2.01096 2.03825 2.77214 2.85131 3.39184 3.46053 3.54014 3.86660 4.16721 4.27466 4.37458 4.45483 4.56191 4.61300 4.67961 4.76150 4.78807 4.87826 5.02650 5.03368 5.14477 5.20425 5.27703 5.33953 5.37269 5.41978 5.44806 5.47041 5.64365 5.66881 5.71948 5.76712 5.79689 5.87204 5.93258 5.98719 6.05502 6.14398 6.24998 6.37527 6.48228 6.54370 6.66769 6.70000 6.82142 7.06803 7.13920 7.32237 7.35112 7.52045 7.72553 7.94375 7.94608 8.66292 9.12333 9.70154 11.19911 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.015753 B = 0.002565 C = 0.002437 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1776.980006 B =10914.139574 C =11484.598206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.067 3.933 3 H 0.079 0.921 4 C -0.091 4.091 5 C -0.004 4.004 6 C -0.517 4.517 7 H 0.067 0.933 8 C 0.063 3.937 9 N -0.910 5.910 10 Si 0.879 3.121 11 H -0.280 1.280 12 H -0.292 1.292 13 H -0.259 1.259 14 N -0.488 5.488 15 C 0.027 3.973 16 C -0.097 4.097 17 C -0.095 4.095 18 C -0.116 4.116 19 C 0.101 3.899 20 N -0.536 5.536 21 C 0.011 3.989 22 C 0.038 3.962 23 N -0.282 5.282 24 N -0.375 5.375 25 C 0.107 3.893 26 C 0.036 3.964 27 C 0.531 3.469 28 O -0.519 6.519 29 C 0.046 3.954 30 H 0.051 0.949 31 H 0.060 0.940 32 H 0.059 0.941 33 H 0.055 0.945 34 H 0.051 0.949 35 H 0.029 0.971 36 H 0.005 0.995 37 H 0.260 0.740 38 H 0.083 0.917 39 H 0.048 0.952 40 H 0.084 0.916 41 H 0.067 0.933 42 H 0.092 0.908 43 H 0.101 0.899 44 H 0.085 0.915 45 H 0.078 0.922 46 H 0.187 0.813 47 H 0.075 0.925 48 H 0.088 0.912 49 H 0.089 0.911 50 H 0.188 0.812 51 H 0.066 0.934 52 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.134 -4.495 -23.390 27.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C -0.041 4.041 3 H 0.097 0.903 4 C -0.128 4.128 5 C -0.042 4.042 6 C -0.555 4.555 7 H 0.085 0.915 8 C -0.137 4.137 9 N -0.549 5.549 10 Si 0.707 3.293 11 H -0.207 1.207 12 H -0.218 1.218 13 H -0.184 1.184 14 N -0.211 5.211 15 C -0.101 4.101 16 C -0.135 4.135 17 C -0.099 4.099 18 C -0.154 4.154 19 C -0.021 4.021 20 N -0.263 5.263 21 C -0.092 4.092 22 C -0.150 4.150 23 N -0.104 5.104 24 N -0.161 5.161 25 C -0.034 4.034 26 C -0.111 4.111 27 C 0.320 3.680 28 O -0.395 6.395 29 C -0.082 4.082 30 H 0.070 0.930 31 H 0.079 0.921 32 H 0.078 0.922 33 H 0.074 0.926 34 H 0.070 0.930 35 H 0.048 0.952 36 H 0.023 0.977 37 H 0.070 0.930 38 H 0.101 0.899 39 H 0.066 0.934 40 H 0.102 0.898 41 H 0.086 0.914 42 H 0.111 0.889 43 H 0.120 0.880 44 H 0.103 0.897 45 H 0.096 0.904 46 H 0.203 0.797 47 H 0.094 0.906 48 H 0.107 0.893 49 H 0.108 0.892 50 H 0.205 0.795 51 H 0.084 0.916 52 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -14.660 -5.406 -23.852 28.514 hybrid contribution 0.210 1.061 -0.046 1.082 sum -14.451 -4.345 -23.898 28.263 Atomic orbital electron populations 1.22495 0.98254 1.02197 1.01479 1.22039 0.91770 0.98708 0.91590 0.90255 1.21480 0.99139 0.98791 0.93440 1.19455 0.91201 0.96120 0.97397 1.21268 0.92628 1.37843 1.03776 0.91468 1.25035 0.98496 0.95012 0.95142 1.69935 1.14463 1.45844 1.24692 0.86771 0.80415 0.79049 0.83090 1.20651 1.21796 1.18354 1.65747 1.51881 1.02227 1.01289 1.23233 1.00247 0.96569 0.90064 1.22162 1.02401 0.91518 0.97461 1.21337 0.93723 0.96612 0.98207 1.22751 0.97643 0.96905 0.98083 1.22325 0.77629 1.02133 1.00047 1.45331 1.06651 1.28560 1.45734 1.17577 0.88997 0.97739 1.04843 1.23638 0.98576 0.94603 0.98197 1.77273 0.92176 1.19441 1.21474 1.48326 1.06346 1.23793 1.37592 1.21856 0.75278 1.02789 1.03507 1.22460 0.94181 0.95366 0.99044 1.20573 0.90134 0.79447 0.77875 1.90635 1.20934 1.66948 1.60949 1.23104 0.99214 0.94353 0.91533 0.92990 0.92143 0.92152 0.92620 0.93035 0.95222 0.97693 0.92991 0.89882 0.93398 0.89769 0.91406 0.88901 0.88041 0.89680 0.90412 0.79655 0.90627 0.89319 0.89188 0.79487 0.91605 0.89012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.59 8.15 37.15 0.30 -2.28 16 2 C 0.07 1.08 2.35 -67.71 -0.16 0.92 16 3 H 0.08 1.27 8.11 -51.93 -0.42 0.85 16 4 C -0.09 -1.78 4.64 -26.73 -0.12 -1.91 16 5 C 0.00 -0.10 3.87 -27.88 -0.11 -0.21 16 6 C -0.52 -14.88 9.66 -34.44 -0.33 -15.21 16 7 H 0.07 2.09 7.99 -52.49 -0.42 1.67 16 8 C 0.06 1.87 5.47 -17.82 -0.10 1.77 16 9 N -0.91 -28.47 13.96 55.43 0.77 -27.70 16 10 Si 0.88 21.99 27.47 -169.99 -4.67 17.32 16 11 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 12 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 13 H -0.26 -6.20 6.54 56.52 0.37 -5.83 16 14 N -0.49 -7.33 4.81 -222.20 -1.07 -8.40 16 15 C 0.03 0.33 6.37 -1.98 -0.01 0.32 16 16 C -0.10 -1.03 6.32 -25.73 -0.16 -1.20 16 17 C -0.09 -1.10 0.83 -155.25 -0.13 -1.23 16 18 C -0.12 -1.10 6.24 -25.51 -0.16 -1.26 16 19 C 0.10 0.80 6.94 -2.94 -0.02 0.78 16 20 N -0.54 -5.88 3.17 -112.59 -0.36 -6.23 16 21 C 0.01 0.12 6.80 -83.88 -0.57 -0.45 16 22 C 0.04 0.38 11.53 -17.22 -0.20 0.18 16 23 N -0.28 -3.15 12.56 30.71 0.39 -2.77 16 24 N -0.37 -3.75 4.04 -67.82 -0.27 -4.03 16 25 C 0.11 0.59 11.48 59.85 0.69 1.28 16 26 C 0.04 0.41 10.70 -16.68 -0.18 0.23 16 27 C 0.53 6.84 6.60 -11.22 -0.07 6.77 16 28 O -0.52 -7.99 15.15 5.54 0.08 -7.91 16 29 C 0.05 0.65 4.69 -2.58 -0.01 0.64 16 30 H 0.05 0.68 6.15 -51.93 -0.32 0.36 16 31 H 0.06 0.87 6.39 -51.93 -0.33 0.54 16 32 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 34 H 0.05 1.02 7.25 -51.93 -0.38 0.65 16 35 H 0.03 0.72 6.88 -51.93 -0.36 0.36 16 36 H 0.00 0.12 7.57 -51.93 -0.39 -0.28 16 37 H 0.26 7.64 8.31 -40.82 -0.34 7.31 16 38 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 39 H 0.05 0.59 6.02 -51.93 -0.31 0.28 16 40 H 0.08 0.77 7.32 -51.93 -0.38 0.39 16 41 H 0.07 0.71 7.76 -51.93 -0.40 0.31 16 42 H 0.09 0.94 7.51 -51.93 -0.39 0.55 16 43 H 0.10 0.87 7.43 -51.93 -0.39 0.48 16 44 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 45 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 46 H 0.19 1.26 8.06 -52.48 -0.42 0.84 16 47 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 48 H 0.09 0.33 8.14 -51.93 -0.42 -0.10 16 49 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 50 H 0.19 2.13 6.52 -52.49 -0.34 1.78 16 51 H 0.07 0.99 4.73 -51.93 -0.25 0.74 16 52 H 0.09 1.39 7.07 -51.93 -0.37 1.02 16 LS Contribution 400.76 15.07 6.04 6.04 Total: -1.00 -35.46 400.76 -8.85 -44.31 By element: Atomic # 1 Polarization: 8.65 SS G_CDS: -8.42 Total: 0.23 kcal Atomic # 6 Polarization: -9.52 SS G_CDS: -1.35 Total: -10.87 kcal Atomic # 7 Polarization: -48.58 SS G_CDS: -0.54 Total: -49.12 kcal Atomic # 8 Polarization: -7.99 SS G_CDS: 0.08 Total: -7.91 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -4.67 Total: 17.32 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -35.46 -8.85 -44.31 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172494748.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.678 kcal (2) G-P(sol) polarization free energy of solvation -35.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.311 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds