Wall clock time and date at job start Wed Apr 1 2020 04:43:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08992 * 109.47641 * 2 1 4 4 C 1.53004 * 109.47038 * 120.00415 * 2 1 3 5 5 C 1.52997 * 109.47162 * 183.60582 * 4 2 1 6 6 C 1.50704 * 109.46823 * 176.05648 * 5 4 2 7 7 H 1.07999 * 120.00365 * 359.97438 * 6 5 4 8 8 C 1.37882 * 119.99557 * 179.97438 * 6 5 4 9 9 N 1.31512 * 119.99611 * 179.97438 * 8 6 5 10 10 Si 1.86797 * 120.00315 * 0.02562 * 8 6 5 11 11 H 1.48505 * 109.46873 * 89.99686 * 10 8 6 12 12 H 1.48492 * 109.47023 * 209.99907 * 10 8 6 13 13 H 1.48499 * 109.46980 * 329.99864 * 10 8 6 14 14 N 1.46901 * 109.47086 * 239.99493 * 2 1 3 15 15 C 1.48661 * 110.99422 * 67.98305 * 14 2 1 16 16 C 1.54648 * 104.62777 * 201.48388 * 15 14 2 17 17 C 1.53261 * 104.67277 * 23.69906 * 16 15 14 18 18 C 1.53615 * 111.05587 * 238.97603 * 17 16 15 19 19 C 1.54707 * 101.50765 * 262.70563 * 18 17 16 20 20 N 1.46879 * 105.51695 * 335.46853 * 19 18 17 21 21 C 1.40766 * 124.37407 * 196.79806 * 20 19 18 22 22 C 1.40257 * 126.07771 * 0.02852 * 21 20 19 23 23 N 1.30829 * 108.33344 * 179.97438 * 22 21 20 24 24 N 1.40064 * 108.36984 * 0.02562 * 23 22 21 25 25 C 1.46505 * 126.05205 * 180.02562 * 24 23 22 26 26 C 1.35753 * 126.08442 * 179.71253 * 21 20 19 27 27 C 1.34756 * 111.26046 * 16.82701 * 20 19 18 28 28 O 1.21301 * 125.14094 * 178.73634 * 27 20 19 29 29 C 1.48802 * 111.00479 * 312.36514 * 14 2 1 30 30 H 1.09002 * 109.47185 * 67.86328 * 1 2 3 31 31 H 1.09000 * 109.47937 * 187.86364 * 1 2 3 32 32 H 1.09000 * 109.47457 * 307.86540 * 1 2 3 33 33 H 1.09002 * 109.46950 * 303.60341 * 4 2 1 34 34 H 1.09001 * 109.47463 * 63.60151 * 4 2 1 35 35 H 1.09004 * 109.47116 * 296.05211 * 5 4 2 36 36 H 1.08993 * 109.47266 * 56.05823 * 5 4 2 37 37 H 0.97006 * 120.00262 * 180.02562 * 9 8 6 38 38 H 1.08992 * 110.40243 * 82.69841 * 15 14 2 39 39 H 1.08997 * 110.40335 * 320.26793 * 15 14 2 40 40 H 1.08993 * 110.39409 * 264.90047 * 16 15 14 41 41 H 1.09000 * 110.39525 * 142.49317 * 16 15 14 42 42 H 1.08992 * 111.01938 * 144.64474 * 18 17 16 43 43 H 1.09005 * 111.01516 * 20.75531 * 18 17 16 44 44 H 1.09004 * 110.23613 * 216.46244 * 19 18 17 45 45 H 1.08993 * 110.23967 * 94.48323 * 19 18 17 46 46 H 1.08004 * 125.83243 * 359.96473 * 22 21 20 47 47 H 1.08992 * 109.47571 * 89.96859 * 25 24 23 48 48 H 1.09004 * 109.46410 * 209.96918 * 25 24 23 49 49 H 1.09000 * 109.47109 * 329.96138 * 25 24 23 50 50 H 1.08002 * 126.21620 * 0.04386 * 26 21 20 51 51 H 1.09002 * 110.45461 * 39.46443 * 29 14 2 52 52 H 1.09002 * 110.45568 * 276.90644 * 29 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7214 1.2492 5 6 3.5672 -0.6433 1.2954 6 6 4.0637 -1.2687 2.5736 7 1 3.3602 -1.6802 3.2822 8 6 5.4160 -1.3154 2.8382 9 7 5.8493 -1.8606 3.9538 10 14 6.6328 -0.6029 1.6129 11 1 6.8727 0.8282 1.9287 12 1 7.9135 -1.3497 1.6960 13 1 6.0791 -0.7209 0.2400 14 7 2.0196 -0.6926 -1.1994 15 6 1.7066 0.0838 -2.4279 16 6 1.7550 -0.9570 -3.5706 17 6 1.4934 -2.3013 -2.8826 18 6 2.6629 -3.2721 -3.1054 19 6 2.1443 -4.1120 -4.2966 20 7 0.6798 -4.0180 -4.2355 21 6 -0.2011 -4.8860 -4.9080 22 6 0.1663 -5.9617 -5.7297 23 7 -0.9244 -6.5311 -6.1743 24 7 -2.0265 -5.8406 -5.6541 25 6 -3.4359 -6.1530 -5.9037 26 6 -1.5572 -4.8345 -4.8719 27 6 0.2881 -2.9931 -3.4531 28 8 -0.8635 -2.6742 -3.2449 29 6 1.3149 -1.9889 -1.3918 30 1 -0.3634 0.3872 -0.9519 31 1 -0.3635 -1.0179 0.1406 32 1 -0.3634 0.6308 0.8113 33 1 1.6248 -0.2462 2.1381 34 1 1.7303 -1.7660 1.2175 35 1 3.9844 -1.1792 0.4428 36 1 3.8790 0.4004 1.2566 37 1 6.8007 -1.8932 4.1402 38 1 2.4554 0.8594 -2.5883 39 1 0.7118 0.5236 -2.3563 40 1 2.7372 -0.9569 -4.0432 41 1 0.9782 -0.7495 -4.3066 42 1 2.8248 -3.8972 -2.2273 43 1 3.5722 -2.7338 -3.3732 44 1 2.4601 -5.1501 -4.1919 45 1 2.5097 -3.6990 -5.2367 46 1 1.1769 -6.2675 -5.9567 47 1 -3.7914 -6.8554 -5.1499 48 1 -4.0252 -5.2374 -5.8539 49 1 -3.5396 -6.5984 -6.8931 50 1 -2.1543 -4.1210 -4.3234 51 1 0.2573 -1.8875 -1.1478 52 1 1.7745 -2.7666 -0.7818 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172494748.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:43:31 Heat of formation + Delta-G solvation = 38.788643 kcal Electronic energy + Delta-G solvation = -31403.110853 eV Core-core repulsion = 27403.664737 eV Total energy + Delta-G solvation = -3999.446116 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -42.70980 -41.75994 -39.70037 -37.64623 -36.31753 -34.89484 -34.02348 -32.90236 -31.57503 -30.15970 -29.63948 -29.03717 -27.65261 -27.20012 -25.18818 -23.62163 -23.41431 -22.31574 -22.16931 -21.25034 -20.45112 -19.89857 -18.75014 -18.60802 -17.45920 -17.13053 -16.95842 -16.37896 -16.24698 -16.11810 -15.59797 -15.45823 -15.35867 -15.17919 -14.91278 -14.57408 -14.51369 -14.23663 -13.99694 -13.93134 -13.83282 -13.47886 -13.42311 -13.35367 -13.25319 -12.99033 -12.85988 -12.50483 -12.34112 -12.19720 -12.00746 -11.98813 -11.92371 -11.61516 -11.50966 -11.40231 -11.32437 -11.15562 -11.04585 -10.76774 -10.67723 -10.47909 -9.22437 -8.69111 -8.21644 -6.24406 0.68553 1.15999 1.35288 1.42589 1.44593 1.59973 1.98648 2.04742 2.45097 2.94774 3.14868 3.33792 3.34818 3.57588 3.64661 3.86840 3.89367 3.98745 4.03258 4.21520 4.23270 4.29929 4.38900 4.40310 4.42411 4.45456 4.53991 4.63717 4.64733 4.65697 4.67407 4.69465 4.80568 4.84045 4.91532 4.93730 4.99265 5.09263 5.13529 5.14816 5.17548 5.21167 5.25504 5.39171 5.60033 5.73985 5.74289 5.80046 5.92909 5.98491 6.01931 6.19214 6.38481 6.56542 6.84306 7.03712 7.40116 8.95509 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.015753 B = 0.002565 C = 0.002437 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1776.980006 B =10914.139574 C =11484.598206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.076 3.924 3 H 0.085 0.915 4 C -0.084 4.084 5 C 0.007 3.993 6 C -0.530 4.530 7 H 0.023 0.977 8 C -0.001 4.001 9 N -0.958 5.958 10 Si 0.954 3.046 11 H -0.272 1.272 12 H -0.288 1.288 13 H -0.236 1.236 14 N -0.502 5.502 15 C 0.026 3.974 16 C -0.089 4.089 17 C -0.091 4.091 18 C -0.114 4.114 19 C 0.101 3.899 20 N -0.533 5.533 21 C -0.009 4.009 22 C 0.043 3.957 23 N -0.304 5.304 24 N -0.376 5.376 25 C 0.097 3.903 26 C 0.025 3.975 27 C 0.523 3.477 28 O -0.555 6.555 29 C 0.048 3.952 30 H 0.063 0.937 31 H 0.050 0.950 32 H 0.067 0.933 33 H 0.046 0.954 34 H 0.040 0.960 35 H 0.032 0.968 36 H 0.010 0.990 37 H 0.264 0.736 38 H 0.095 0.905 39 H 0.047 0.953 40 H 0.107 0.893 41 H 0.070 0.930 42 H 0.081 0.919 43 H 0.118 0.882 44 H 0.104 0.896 45 H 0.104 0.896 46 H 0.216 0.784 47 H 0.085 0.915 48 H 0.106 0.894 49 H 0.101 0.899 50 H 0.181 0.819 51 H 0.052 0.948 52 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.183 -3.857 -26.765 30.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.033 4.033 3 H 0.103 0.897 4 C -0.122 4.122 5 C -0.031 4.031 6 C -0.568 4.568 7 H 0.042 0.958 8 C -0.196 4.196 9 N -0.600 5.600 10 Si 0.777 3.223 11 H -0.197 1.197 12 H -0.214 1.214 13 H -0.159 1.159 14 N -0.226 5.226 15 C -0.101 4.101 16 C -0.128 4.128 17 C -0.096 4.096 18 C -0.151 4.151 19 C -0.020 4.020 20 N -0.258 5.258 21 C -0.111 4.111 22 C -0.144 4.144 23 N -0.126 5.126 24 N -0.161 5.161 25 C -0.043 4.043 26 C -0.123 4.123 27 C 0.312 3.688 28 O -0.433 6.433 29 C -0.080 4.080 30 H 0.082 0.918 31 H 0.069 0.931 32 H 0.086 0.914 33 H 0.065 0.935 34 H 0.059 0.941 35 H 0.050 0.950 36 H 0.028 0.972 37 H 0.072 0.928 38 H 0.113 0.887 39 H 0.065 0.935 40 H 0.126 0.874 41 H 0.089 0.911 42 H 0.099 0.901 43 H 0.136 0.864 44 H 0.122 0.878 45 H 0.122 0.878 46 H 0.233 0.767 47 H 0.104 0.896 48 H 0.124 0.876 49 H 0.119 0.881 50 H 0.197 0.803 51 H 0.070 0.930 52 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -13.727 -4.790 -27.257 30.892 hybrid contribution -0.192 0.780 1.104 1.365 sum -13.919 -4.010 -26.153 29.897 Atomic orbital electron populations 1.22377 0.96748 1.01878 1.02432 1.21823 0.92871 0.98248 0.90381 0.89676 1.21332 0.96611 0.98766 0.95481 1.19320 0.93694 0.95511 0.94564 1.21642 0.92327 1.37783 1.05018 0.95841 1.26068 1.00846 0.95407 0.97319 1.70100 1.15148 1.47598 1.27121 0.85595 0.77327 0.78278 0.81088 1.19705 1.21368 1.15924 1.65682 1.52193 1.02789 1.01918 1.23314 1.00584 0.96994 0.89221 1.22171 1.03795 0.90010 0.96791 1.21295 0.94201 0.97771 0.96287 1.22764 0.97390 0.96550 0.98426 1.22566 0.75685 1.03301 1.00454 1.45424 1.07894 1.27657 1.44817 1.17831 0.89179 0.98492 1.05623 1.24076 0.99607 0.93612 0.97103 1.77232 0.92889 1.20220 1.22297 1.48678 1.07454 1.23121 1.36892 1.22195 0.73515 1.04114 1.04481 1.22509 0.94653 0.95739 0.99372 1.20810 0.89939 0.79956 0.78130 1.90608 1.22260 1.68133 1.62325 1.22990 0.98042 0.93701 0.93290 0.91771 0.93123 0.91415 0.93519 0.94128 0.94982 0.97206 0.92765 0.88686 0.93474 0.87427 0.91148 0.90079 0.86372 0.87760 0.87777 0.76739 0.89628 0.87600 0.88051 0.80252 0.92972 0.90896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.78 8.15 71.98 0.59 -4.19 16 2 C 0.08 2.34 2.35 44.91 0.11 2.44 16 3 H 0.09 2.56 8.11 -2.39 -0.02 2.54 16 4 C -0.08 -3.34 4.64 30.59 0.14 -3.20 16 5 C 0.01 0.31 3.87 29.85 0.12 0.42 16 6 C -0.53 -31.28 9.66 25.60 0.25 -31.03 16 7 H 0.02 1.53 7.99 -2.91 -0.02 1.51 16 8 C 0.00 -0.05 5.47 84.66 0.46 0.41 16 9 N -0.96 -61.45 13.96 21.45 0.30 -61.15 16 10 Si 0.95 44.82 27.47 68.60 1.88 46.71 16 11 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 12 H -0.29 -13.26 7.11 99.48 0.71 -12.55 16 13 H -0.24 -10.16 6.54 99.48 0.65 -9.50 16 14 N -0.50 -14.35 4.81 -856.92 -4.12 -18.47 16 15 C 0.03 0.59 6.37 86.52 0.55 1.14 16 16 C -0.09 -1.66 6.32 31.24 0.20 -1.46 16 17 C -0.09 -1.99 0.83 -52.66 -0.04 -2.03 16 18 C -0.11 -1.88 6.24 31.38 0.20 -1.68 16 19 C 0.10 1.29 6.94 86.89 0.60 1.89 16 20 N -0.53 -10.81 3.17 -628.51 -2.00 -12.81 16 21 C -0.01 -0.18 6.80 37.62 0.26 0.07 16 22 C 0.04 0.78 11.53 85.33 0.98 1.76 16 23 N -0.30 -6.38 12.56 -56.77 -0.71 -7.10 16 24 N -0.38 -7.20 4.04 -368.47 -1.49 -8.69 16 25 C 0.10 0.96 11.48 127.77 1.47 2.43 16 26 C 0.02 0.55 10.70 83.50 0.89 1.45 16 27 C 0.52 13.07 6.60 87.51 0.58 13.65 16 28 O -0.56 -17.28 15.15 -3.10 -0.05 -17.32 16 29 C 0.05 1.35 4.69 86.06 0.40 1.75 16 30 H 0.06 1.60 6.15 -2.39 -0.01 1.58 16 31 H 0.05 1.47 6.39 -2.39 -0.02 1.46 16 32 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 33 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 34 H 0.04 1.67 7.25 -2.39 -0.02 1.65 16 35 H 0.03 1.50 6.88 -2.38 -0.02 1.49 16 36 H 0.01 0.45 7.57 -2.39 -0.02 0.43 16 37 H 0.26 15.76 8.31 -92.70 -0.77 14.99 16 38 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 39 H 0.05 1.06 6.02 -2.39 -0.01 1.04 16 40 H 0.11 1.50 7.32 -2.39 -0.02 1.48 16 41 H 0.07 1.30 7.76 -2.39 -0.02 1.28 16 42 H 0.08 1.54 7.51 -2.39 -0.02 1.52 16 43 H 0.12 1.58 7.43 -2.38 -0.02 1.56 16 44 H 0.10 0.97 8.14 -2.38 -0.02 0.95 16 45 H 0.10 0.86 8.14 -2.39 -0.02 0.84 16 46 H 0.22 2.23 8.06 -2.91 -0.02 2.21 16 47 H 0.09 0.68 8.14 -2.39 -0.02 0.66 16 48 H 0.11 0.66 8.14 -2.38 -0.02 0.64 16 49 H 0.10 0.77 8.14 -2.39 -0.02 0.75 16 50 H 0.18 4.21 6.52 -2.91 -0.02 4.19 16 51 H 0.05 1.60 4.73 -2.39 -0.01 1.59 16 52 H 0.07 2.27 7.07 -2.39 -0.02 2.25 16 Total: -1.00 -79.04 400.76 2.42 -76.62 By element: Atomic # 1 Polarization: 17.53 SS G_CDS: 0.86 Total: 18.39 kcal Atomic # 6 Polarization: -23.92 SS G_CDS: 7.75 Total: -16.18 kcal Atomic # 7 Polarization: -100.19 SS G_CDS: -8.02 Total: -108.21 kcal Atomic # 8 Polarization: -17.28 SS G_CDS: -0.05 Total: -17.32 kcal Atomic # 14 Polarization: 44.82 SS G_CDS: 1.88 Total: 46.71 kcal Total: -79.04 2.42 -76.62 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172494748.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.404 kcal (2) G-P(sol) polarization free energy of solvation -79.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.615 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds