Wall clock time and date at job start Wed Apr 1 2020 04:44:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09007 * 109.47200 * 2 1 4 4 C 1.53006 * 109.47181 * 240.00020 * 2 1 3 5 5 C 1.53003 * 109.47141 * 174.99794 * 4 2 1 6 6 C 1.50697 * 109.47073 * 179.97438 * 5 4 2 7 7 H 1.08004 * 120.00191 * 0.02562 * 6 5 4 8 8 C 1.37875 * 119.99916 * 179.97438 * 6 5 4 9 9 N 1.31513 * 119.99801 * 180.02562 * 8 6 5 10 10 Si 1.86800 * 120.00150 * 0.02562 * 8 6 5 11 11 H 1.48500 * 109.47133 * 89.99639 * 10 8 6 12 12 H 1.48496 * 109.46924 * 209.99690 * 10 8 6 13 13 H 1.48494 * 109.46756 * 329.99703 * 10 8 6 14 14 N 1.46898 * 109.47486 * 119.99950 * 2 1 3 15 15 C 1.50012 * 111.00138 * 58.93457 * 14 2 1 16 16 C 1.55279 * 106.25800 * 213.18392 * 15 14 2 17 17 C 1.50316 * 103.18539 * 355.51505 * 16 15 14 18 18 H 1.08997 * 107.88880 * 279.83633 * 17 16 15 19 19 C 1.45267 * 110.99840 * 304.68434 * 14 2 1 20 20 H 1.08996 * 111.10618 * 48.44834 * 19 14 2 21 21 C 1.52081 * 123.27241 * 272.79535 * 19 14 2 22 22 C 1.56109 * 100.81555 * 209.51771 * 21 19 14 23 23 N 1.42845 * 127.80732 * 147.94860 * 17 16 15 24 24 C 1.34782 * 127.08499 * 28.57723 * 23 17 16 25 25 O 1.21606 * 119.99831 * 354.43910 * 24 23 17 26 26 C 1.47424 * 120.00001 * 174.71213 * 24 23 17 27 27 C 1.41291 * 126.41696 * 4.19524 * 26 24 23 28 28 N 1.30445 * 108.02450 * 179.81165 * 27 26 24 29 29 N 1.39937 * 108.89579 * 0.44604 * 28 27 26 30 30 C 1.46505 * 125.75520 * 179.72882 * 29 28 27 31 31 C 1.34256 * 108.49260 * 359.71349 * 29 28 27 32 32 H 1.09006 * 109.47305 * 295.21507 * 1 2 3 33 33 H 1.08992 * 109.47733 * 55.22014 * 1 2 3 34 34 H 1.09008 * 109.47006 * 175.22199 * 1 2 3 35 35 H 1.08999 * 109.46598 * 294.99846 * 4 2 1 36 36 H 1.08998 * 109.46986 * 54.99408 * 4 2 1 37 37 H 1.08998 * 109.46729 * 299.99844 * 5 4 2 38 38 H 1.09004 * 109.47163 * 59.99651 * 5 4 2 39 39 H 0.97004 * 120.00008 * 180.02562 * 9 8 6 40 40 H 1.09000 * 110.09401 * 332.78676 * 15 14 2 41 41 H 1.09004 * 110.09059 * 94.37852 * 15 14 2 42 42 H 1.08995 * 111.07258 * 236.83988 * 16 15 14 43 43 H 1.08999 * 110.09440 * 113.73717 * 16 15 14 44 44 H 1.09000 * 111.12687 * 327.61233 * 21 19 14 45 45 H 1.09003 * 111.13110 * 91.75380 * 21 19 14 46 46 H 1.09000 * 110.13162 * 264.49079 * 22 21 19 47 47 H 1.08997 * 109.94071 * 143.02603 * 22 21 19 48 48 H 1.08004 * 125.98891 * 359.97438 * 27 26 24 49 49 H 1.08994 * 109.47182 * 269.98121 * 30 29 28 50 50 H 1.09002 * 109.46647 * 29.97640 * 30 29 28 51 51 H 1.08992 * 109.47132 * 149.97507 * 30 29 28 52 52 H 1.07995 * 126.29511 * 180.02562 * 31 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 3.5648 -0.6133 -1.3138 6 6 4.0672 -1.3242 -2.5439 7 1 3.3687 -1.8046 -3.2130 8 6 5.4184 -1.3604 -2.8156 9 7 5.8567 -1.9804 -3.8894 10 14 6.6264 -0.5288 -1.6587 11 1 7.0620 -1.4958 -0.6193 12 1 7.8081 -0.0633 -2.4280 13 1 5.9693 0.6336 -1.0090 14 7 2.0197 -0.6925 1.1994 15 6 1.5176 -2.1053 1.2472 16 6 1.3190 -2.4454 2.7492 17 6 1.8372 -1.2205 3.4496 18 1 2.9248 -1.2866 3.4790 19 6 1.4656 -0.1007 2.4048 20 1 0.3864 0.0259 2.3196 21 6 2.1007 1.0802 3.1225 22 6 1.6572 0.8021 4.5932 23 7 1.3885 -0.6631 4.6859 24 6 0.8319 -1.3233 5.7207 25 8 0.5737 -2.5072 5.6183 26 6 0.5305 -0.6089 6.9745 27 6 0.6902 0.7750 7.2106 28 7 0.3134 1.0217 8.4349 29 7 -0.0897 -0.1764 9.0351 30 6 -0.5767 -0.3241 10.4089 31 6 0.0449 -1.1677 8.1397 32 1 -0.3634 0.4378 0.9298 33 1 -0.3634 0.5861 -0.8440 34 1 -0.3633 -1.0242 -0.0856 35 1 1.7516 -1.7715 -1.2055 36 1 1.6052 -0.2618 -2.1370 37 1 3.8530 0.4370 -1.3574 38 1 3.9995 -1.0727 -0.4260 39 1 6.8074 -2.0062 -4.0804 40 1 0.5721 -2.1850 0.7107 41 1 2.2545 -2.7795 0.8108 42 1 1.8974 -3.3250 3.0316 43 1 0.2605 -2.5934 2.9629 44 1 3.1862 1.0613 3.0254 45 1 1.6926 2.0246 2.7625 46 1 0.7519 1.3634 4.8245 47 1 2.4557 1.0799 5.2811 48 1 1.0572 1.5017 6.5009 49 1 0.2643 -0.5225 11.0732 50 1 -1.0752 0.5945 10.7184 51 1 -1.2816 -1.1540 10.4573 52 1 -0.1849 -2.2105 8.3011 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172494828.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:44:03 Heat of formation + Delta-G solvation = 84.800264 kcal Electronic energy + Delta-G solvation = -31189.850655 eV Core-core repulsion = 27192.399753 eV Total energy + Delta-G solvation = -3997.450903 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.83066 -40.96122 -38.70646 -36.73907 -34.29975 -33.67516 -32.58039 -31.66771 -30.75788 -30.00900 -28.43546 -27.80960 -26.81125 -25.36223 -24.15550 -22.51723 -21.97936 -21.69667 -20.86929 -20.22765 -19.63329 -18.65572 -17.31071 -17.10346 -16.52144 -16.23456 -16.12297 -15.58659 -15.25767 -15.05853 -14.72306 -14.35281 -14.16255 -14.07181 -13.61598 -13.58160 -13.31411 -13.21245 -13.13580 -12.92140 -12.74754 -12.48317 -12.35764 -12.06976 -11.87790 -11.59052 -11.45857 -11.33087 -11.29394 -11.11190 -10.87028 -10.64936 -10.37091 -10.28146 -10.02487 -9.92119 -9.85927 -9.60742 -9.41472 -9.12732 -9.00733 -8.63954 -8.42190 -8.09709 -5.93600 -3.90012 1.16226 1.81914 1.90709 2.73274 3.23437 3.41160 3.47363 3.53627 3.76455 4.05465 4.30364 4.34374 4.46557 4.53764 4.56686 4.58466 4.69234 4.82960 4.84967 4.98493 5.05534 5.09150 5.15338 5.18558 5.23873 5.35576 5.40824 5.42125 5.44771 5.47760 5.59622 5.74590 5.78135 5.92864 5.94941 6.01032 6.08977 6.12381 6.21238 6.30962 6.35115 6.35524 6.41569 6.51269 6.72340 7.05251 7.10569 7.12826 7.32445 7.48397 7.52442 7.69110 7.94294 8.12418 8.65962 9.12276 9.70458 11.20127 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.019914 B = 0.002312 C = 0.002259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1405.701335 B =12108.296471 C =12389.912359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.068 3.932 3 H 0.081 0.919 4 C -0.095 4.095 5 C -0.006 4.006 6 C -0.517 4.517 7 H 0.067 0.933 8 C 0.064 3.936 9 N -0.909 5.909 10 Si 0.882 3.118 11 H -0.278 1.278 12 H -0.292 1.292 13 H -0.264 1.264 14 N -0.478 5.478 15 C 0.032 3.968 16 C -0.110 4.110 17 C 0.122 3.878 18 H 0.077 0.923 19 C 0.028 3.972 20 H 0.066 0.934 21 C -0.113 4.113 22 C 0.102 3.898 23 N -0.599 5.599 24 C 0.610 3.390 25 O -0.545 6.545 26 C -0.288 4.288 27 C 0.071 3.929 28 N -0.299 5.299 29 N -0.365 5.365 30 C 0.096 3.904 31 C 0.128 3.872 32 H 0.052 0.948 33 H 0.061 0.939 34 H 0.058 0.942 35 H 0.054 0.946 36 H 0.055 0.945 37 H 0.010 0.990 38 H 0.025 0.975 39 H 0.261 0.739 40 H 0.059 0.941 41 H 0.091 0.909 42 H 0.078 0.922 43 H 0.069 0.931 44 H 0.091 0.909 45 H 0.082 0.918 46 H 0.078 0.922 47 H 0.078 0.922 48 H 0.198 0.802 49 H 0.080 0.920 50 H 0.093 0.907 51 H 0.092 0.908 52 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.765 6.387 27.968 32.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C -0.041 4.041 3 H 0.099 0.901 4 C -0.132 4.132 5 C -0.043 4.043 6 C -0.555 4.555 7 H 0.086 0.914 8 C -0.137 4.137 9 N -0.548 5.548 10 Si 0.710 3.290 11 H -0.204 1.204 12 H -0.219 1.219 13 H -0.189 1.189 14 N -0.201 5.201 15 C -0.095 4.095 16 C -0.148 4.148 17 C 0.016 3.984 18 H 0.095 0.905 19 C -0.083 4.083 20 H 0.084 0.916 21 C -0.151 4.151 22 C -0.021 4.021 23 N -0.331 5.331 24 C 0.401 3.599 25 O -0.423 6.423 26 C -0.303 4.303 27 C -0.117 4.117 28 N -0.119 5.119 29 N -0.144 5.144 30 C -0.045 4.045 31 C -0.024 4.024 32 H 0.071 0.929 33 H 0.080 0.920 34 H 0.077 0.923 35 H 0.073 0.927 36 H 0.074 0.926 37 H 0.028 0.972 38 H 0.043 0.957 39 H 0.070 0.930 40 H 0.077 0.923 41 H 0.109 0.891 42 H 0.097 0.903 43 H 0.088 0.912 44 H 0.109 0.891 45 H 0.101 0.899 46 H 0.096 0.904 47 H 0.097 0.903 48 H 0.214 0.786 49 H 0.099 0.901 50 H 0.112 0.888 51 H 0.110 0.890 52 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges -14.386 6.595 28.933 32.979 hybrid contribution -0.049 -0.212 -0.113 0.246 sum -14.435 6.382 28.820 32.859 Atomic orbital electron populations 1.22532 0.98539 1.02084 1.01567 1.22055 0.91568 0.98938 0.91490 0.90127 1.21537 0.99215 0.98975 0.93507 1.19474 0.91187 0.96434 0.97240 1.21240 0.92804 1.33940 1.07555 0.91441 1.25031 0.98478 0.95051 0.95102 1.69932 1.14416 1.43961 1.26536 0.86738 0.80536 0.80695 0.81072 1.20380 1.21854 1.18866 1.64967 1.53126 1.01675 1.00360 1.23654 1.00346 0.90672 0.94831 1.21698 1.01991 0.97060 0.94093 1.21145 0.99271 0.95594 0.82378 0.90493 1.23237 0.97980 0.95460 0.91601 0.91634 1.22241 1.02632 0.98120 0.92135 1.23135 1.00644 0.80184 0.98103 1.47315 1.61793 1.08916 1.15124 1.16857 0.76235 0.85496 0.81343 1.90786 1.53590 1.15362 1.82536 1.20207 1.19402 0.94248 0.96471 1.24681 0.97404 0.95582 0.93999 1.77211 1.20662 1.04537 1.09500 1.48457 1.48888 1.05217 1.11836 1.22009 1.00473 1.04611 0.77371 1.22969 0.95623 0.95394 0.88408 0.92909 0.92002 0.92323 0.92732 0.92608 0.97203 0.95658 0.92973 0.92269 0.89080 0.90321 0.91237 0.89066 0.89929 0.90436 0.90345 0.78556 0.90119 0.88787 0.88956 0.79420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.42 8.46 37.15 0.31 -2.11 16 2 C 0.07 1.05 2.49 -67.72 -0.17 0.88 16 3 H 0.08 1.26 8.14 -51.92 -0.42 0.83 16 4 C -0.09 -1.83 4.52 -26.73 -0.12 -1.95 16 5 C -0.01 -0.14 3.93 -27.88 -0.11 -0.25 16 6 C -0.52 -14.94 9.66 -34.44 -0.33 -15.27 16 7 H 0.07 2.10 7.99 -52.48 -0.42 1.68 16 8 C 0.06 1.89 5.47 -17.82 -0.10 1.79 16 9 N -0.91 -28.59 13.96 55.43 0.77 -27.82 16 10 Si 0.88 22.37 27.47 -169.99 -4.67 17.70 16 11 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 12 H -0.29 -7.36 7.11 56.52 0.40 -6.95 16 13 H -0.26 -6.43 6.54 56.52 0.37 -6.06 16 14 N -0.48 -7.19 4.79 -213.38 -1.02 -8.21 16 15 C 0.03 0.47 5.17 -0.87 0.00 0.47 16 16 C -0.11 -1.50 5.95 -26.86 -0.16 -1.66 16 17 C 0.12 1.59 3.00 -68.68 -0.21 1.38 16 18 H 0.08 1.10 8.05 -51.93 -0.42 0.68 16 19 C 0.03 0.34 2.38 -66.55 -0.16 0.18 16 20 H 0.07 0.81 5.62 -51.93 -0.29 0.52 16 21 C -0.11 -1.09 6.81 -25.53 -0.17 -1.26 16 22 C 0.10 0.84 5.11 -0.85 0.00 0.83 16 23 N -0.60 -6.94 3.22 -164.44 -0.53 -7.47 16 24 C 0.61 7.85 7.86 -12.52 -0.10 7.75 16 25 O -0.54 -8.66 16.50 5.27 0.09 -8.57 16 26 C -0.29 -3.01 6.10 -105.07 -0.64 -3.65 16 27 C 0.07 0.64 10.62 -16.98 -0.18 0.46 16 28 N -0.30 -2.92 12.50 30.86 0.39 -2.53 16 29 N -0.37 -2.82 3.98 -67.60 -0.27 -3.09 16 30 C 0.10 0.30 11.44 59.85 0.68 0.99 16 31 C 0.13 1.09 11.30 -16.56 -0.19 0.90 16 32 H 0.05 0.61 5.85 -51.93 -0.30 0.31 16 33 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 34 H 0.06 0.76 6.15 -51.92 -0.32 0.44 16 35 H 0.05 1.07 6.96 -51.93 -0.36 0.71 16 36 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 37 H 0.01 0.24 7.20 -51.93 -0.37 -0.14 16 38 H 0.03 0.61 7.18 -51.93 -0.37 0.24 16 39 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 40 H 0.06 0.82 5.49 -51.93 -0.29 0.54 16 41 H 0.09 1.46 8.10 -51.93 -0.42 1.04 16 42 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 43 H 0.07 0.97 8.06 -51.93 -0.42 0.55 16 44 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 45 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 46 H 0.08 0.50 6.64 -51.93 -0.34 0.15 16 47 H 0.08 0.52 7.43 -51.93 -0.39 0.14 16 48 H 0.20 1.28 4.57 -52.48 -0.24 1.04 16 49 H 0.08 0.17 8.14 -51.93 -0.42 -0.26 16 50 H 0.09 0.25 8.14 -51.93 -0.42 -0.18 16 51 H 0.09 0.08 8.14 -51.93 -0.42 -0.34 16 52 H 0.19 1.17 8.06 -52.49 -0.42 0.75 16 LS Contribution 398.36 15.07 6.00 6.00 Total: -1.00 -36.37 398.36 -9.23 -45.60 By element: Atomic # 1 Polarization: 7.26 SS G_CDS: -8.35 Total: -1.09 kcal Atomic # 6 Polarization: -8.88 SS G_CDS: -1.64 Total: -10.52 kcal Atomic # 7 Polarization: -48.46 SS G_CDS: -0.66 Total: -49.12 kcal Atomic # 8 Polarization: -8.66 SS G_CDS: 0.09 Total: -8.57 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -4.67 Total: 17.70 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -36.37 -9.23 -45.60 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172494828.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.402 kcal (2) G-P(sol) polarization free energy of solvation -36.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.233 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.602 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds