Wall clock time and date at job start Wed Apr 1 2020 04:44:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09007 * 109.47200 * 2 1 4 4 C 1.53006 * 109.47181 * 240.00020 * 2 1 3 5 5 C 1.53003 * 109.47141 * 174.99794 * 4 2 1 6 6 C 1.50697 * 109.47073 * 179.97438 * 5 4 2 7 7 H 1.08004 * 120.00191 * 0.02562 * 6 5 4 8 8 C 1.37875 * 119.99916 * 179.97438 * 6 5 4 9 9 N 1.31513 * 119.99801 * 180.02562 * 8 6 5 10 10 Si 1.86800 * 120.00150 * 0.02562 * 8 6 5 11 11 H 1.48500 * 109.47133 * 89.99639 * 10 8 6 12 12 H 1.48496 * 109.46924 * 209.99690 * 10 8 6 13 13 H 1.48494 * 109.46756 * 329.99703 * 10 8 6 14 14 N 1.46898 * 109.47486 * 119.99950 * 2 1 3 15 15 C 1.50012 * 111.00138 * 58.93457 * 14 2 1 16 16 C 1.55279 * 106.25800 * 213.18392 * 15 14 2 17 17 C 1.50316 * 103.18539 * 355.51505 * 16 15 14 18 18 H 1.08997 * 107.88880 * 279.83633 * 17 16 15 19 19 C 1.45267 * 110.99840 * 304.68434 * 14 2 1 20 20 H 1.08996 * 111.10618 * 48.44834 * 19 14 2 21 21 C 1.52081 * 123.27241 * 272.79535 * 19 14 2 22 22 C 1.56109 * 100.81555 * 209.51771 * 21 19 14 23 23 N 1.42845 * 127.80732 * 147.94860 * 17 16 15 24 24 C 1.34782 * 127.08499 * 28.57723 * 23 17 16 25 25 O 1.21606 * 119.99831 * 354.43910 * 24 23 17 26 26 C 1.47424 * 120.00001 * 174.71213 * 24 23 17 27 27 C 1.41291 * 126.41696 * 4.19524 * 26 24 23 28 28 N 1.30445 * 108.02450 * 179.81165 * 27 26 24 29 29 N 1.39937 * 108.89579 * 0.44604 * 28 27 26 30 30 C 1.46505 * 125.75520 * 179.72882 * 29 28 27 31 31 C 1.34256 * 108.49260 * 359.71349 * 29 28 27 32 32 H 1.09006 * 109.47305 * 295.21507 * 1 2 3 33 33 H 1.08992 * 109.47733 * 55.22014 * 1 2 3 34 34 H 1.09008 * 109.47006 * 175.22199 * 1 2 3 35 35 H 1.08999 * 109.46598 * 294.99846 * 4 2 1 36 36 H 1.08998 * 109.46986 * 54.99408 * 4 2 1 37 37 H 1.08998 * 109.46729 * 299.99844 * 5 4 2 38 38 H 1.09004 * 109.47163 * 59.99651 * 5 4 2 39 39 H 0.97004 * 120.00008 * 180.02562 * 9 8 6 40 40 H 1.09000 * 110.09401 * 332.78676 * 15 14 2 41 41 H 1.09004 * 110.09059 * 94.37852 * 15 14 2 42 42 H 1.08995 * 111.07258 * 236.83988 * 16 15 14 43 43 H 1.08999 * 110.09440 * 113.73717 * 16 15 14 44 44 H 1.09000 * 111.12687 * 327.61233 * 21 19 14 45 45 H 1.09003 * 111.13110 * 91.75380 * 21 19 14 46 46 H 1.09000 * 110.13162 * 264.49079 * 22 21 19 47 47 H 1.08997 * 109.94071 * 143.02603 * 22 21 19 48 48 H 1.08004 * 125.98891 * 359.97438 * 27 26 24 49 49 H 1.08994 * 109.47182 * 269.98121 * 30 29 28 50 50 H 1.09002 * 109.46647 * 29.97640 * 30 29 28 51 51 H 1.08992 * 109.47132 * 149.97507 * 30 29 28 52 52 H 1.07995 * 126.29511 * 180.02562 * 31 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 3.5648 -0.6133 -1.3138 6 6 4.0672 -1.3242 -2.5439 7 1 3.3687 -1.8046 -3.2130 8 6 5.4184 -1.3604 -2.8156 9 7 5.8567 -1.9804 -3.8894 10 14 6.6264 -0.5288 -1.6587 11 1 7.0620 -1.4958 -0.6193 12 1 7.8081 -0.0633 -2.4280 13 1 5.9693 0.6336 -1.0090 14 7 2.0197 -0.6925 1.1994 15 6 1.5176 -2.1053 1.2472 16 6 1.3190 -2.4454 2.7492 17 6 1.8372 -1.2205 3.4496 18 1 2.9248 -1.2866 3.4790 19 6 1.4656 -0.1007 2.4048 20 1 0.3864 0.0259 2.3196 21 6 2.1007 1.0802 3.1225 22 6 1.6572 0.8021 4.5932 23 7 1.3885 -0.6631 4.6859 24 6 0.8319 -1.3233 5.7207 25 8 0.5737 -2.5072 5.6183 26 6 0.5305 -0.6089 6.9745 27 6 0.6902 0.7750 7.2106 28 7 0.3134 1.0217 8.4349 29 7 -0.0897 -0.1764 9.0351 30 6 -0.5767 -0.3241 10.4089 31 6 0.0449 -1.1677 8.1397 32 1 -0.3634 0.4378 0.9298 33 1 -0.3634 0.5861 -0.8440 34 1 -0.3633 -1.0242 -0.0856 35 1 1.7516 -1.7715 -1.2055 36 1 1.6052 -0.2618 -2.1370 37 1 3.8530 0.4370 -1.3574 38 1 3.9995 -1.0727 -0.4260 39 1 6.8074 -2.0062 -4.0804 40 1 0.5721 -2.1850 0.7107 41 1 2.2545 -2.7795 0.8108 42 1 1.8974 -3.3250 3.0316 43 1 0.2605 -2.5934 2.9629 44 1 3.1862 1.0613 3.0254 45 1 1.6926 2.0246 2.7625 46 1 0.7519 1.3634 4.8245 47 1 2.4557 1.0799 5.2811 48 1 1.0572 1.5017 6.5009 49 1 0.2643 -0.5225 11.0732 50 1 -1.0752 0.5945 10.7184 51 1 -1.2816 -1.1540 10.4573 52 1 -0.1849 -2.2105 8.3011 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172494828.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:44:02 Heat of formation + Delta-G solvation = 59.517367 kcal Electronic energy + Delta-G solvation = -31190.947004 eV Core-core repulsion = 27192.399753 eV Total energy + Delta-G solvation = -3998.547251 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -42.53699 -41.87065 -39.72646 -37.82277 -35.67541 -34.60072 -34.12606 -32.75244 -31.85913 -31.21198 -29.41716 -28.62312 -27.59208 -27.05383 -24.99308 -23.65230 -23.04554 -22.51538 -22.08206 -21.35492 -20.60782 -19.69873 -18.76313 -18.18605 -17.95788 -16.96824 -16.82214 -16.39957 -16.32116 -16.29732 -15.97095 -15.51204 -15.24064 -15.09027 -14.75146 -14.54159 -14.42279 -14.30811 -14.02979 -13.94807 -13.61177 -13.53679 -13.43724 -13.17897 -13.11080 -13.00034 -12.79007 -12.54583 -12.31756 -12.17965 -12.06717 -11.81293 -11.77156 -11.65908 -11.44985 -11.31358 -11.25785 -11.00126 -10.83884 -10.69611 -10.60776 -9.86141 -9.49786 -9.23906 -8.24029 -6.26103 0.49697 1.13015 1.39878 1.41047 1.42571 1.54517 1.90131 2.39766 2.41693 2.84128 3.12629 3.24271 3.52449 3.65317 3.79487 3.88550 3.95420 4.01269 4.06984 4.11310 4.19193 4.27221 4.32500 4.37131 4.41521 4.42277 4.47289 4.53538 4.59052 4.64735 4.69960 4.71304 4.78586 4.84536 4.88915 4.97461 5.03956 5.07468 5.14064 5.19167 5.23059 5.27784 5.33328 5.43029 5.48920 5.60958 5.73015 5.77166 5.84394 5.97294 6.25552 6.36533 6.49054 6.58057 6.82743 7.20508 7.38314 8.92990 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.019914 B = 0.002312 C = 0.002259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1405.701335 B =12108.296471 C =12389.912359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.077 3.923 3 H 0.087 0.913 4 C -0.089 4.089 5 C 0.003 3.997 6 C -0.528 4.528 7 H 0.027 0.973 8 C 0.000 4.000 9 N -0.956 5.956 10 Si 0.953 3.047 11 H -0.272 1.272 12 H -0.287 1.287 13 H -0.243 1.243 14 N -0.496 5.496 15 C 0.036 3.964 16 C -0.102 4.102 17 C 0.120 3.880 18 H 0.061 0.939 19 C 0.033 3.967 20 H 0.072 0.928 21 C -0.109 4.109 22 C 0.102 3.898 23 N -0.600 5.600 24 C 0.606 3.394 25 O -0.587 6.587 26 C -0.314 4.314 27 C 0.076 3.924 28 N -0.324 5.324 29 N -0.361 5.361 30 C 0.085 3.915 31 C 0.132 3.868 32 H 0.072 0.928 33 H 0.069 0.931 34 H 0.053 0.947 35 H 0.044 0.956 36 H 0.052 0.948 37 H 0.013 0.987 38 H 0.023 0.977 39 H 0.264 0.736 40 H 0.065 0.935 41 H 0.067 0.933 42 H 0.067 0.933 43 H 0.065 0.935 44 H 0.082 0.918 45 H 0.107 0.893 46 H 0.103 0.897 47 H 0.099 0.901 48 H 0.219 0.781 49 H 0.093 0.907 50 H 0.099 0.901 51 H 0.117 0.883 52 H 0.206 0.794 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.536 9.000 31.075 35.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.031 4.031 3 H 0.106 0.894 4 C -0.127 4.127 5 C -0.034 4.034 6 C -0.566 4.566 7 H 0.045 0.955 8 C -0.196 4.196 9 N -0.598 5.598 10 Si 0.777 3.223 11 H -0.197 1.197 12 H -0.213 1.213 13 H -0.166 1.166 14 N -0.220 5.220 15 C -0.091 4.091 16 C -0.141 4.141 17 C 0.014 3.986 18 H 0.079 0.921 19 C -0.077 4.077 20 H 0.090 0.910 21 C -0.147 4.147 22 C -0.019 4.019 23 N -0.331 5.331 24 C 0.398 3.602 25 O -0.469 6.469 26 C -0.329 4.329 27 C -0.111 4.111 28 N -0.144 5.144 29 N -0.139 5.139 30 C -0.054 4.054 31 C -0.021 4.021 32 H 0.091 0.909 33 H 0.088 0.912 34 H 0.072 0.928 35 H 0.062 0.938 36 H 0.070 0.930 37 H 0.031 0.969 38 H 0.041 0.959 39 H 0.072 0.928 40 H 0.083 0.917 41 H 0.085 0.915 42 H 0.086 0.914 43 H 0.084 0.916 44 H 0.101 0.899 45 H 0.125 0.875 46 H 0.121 0.879 47 H 0.117 0.883 48 H 0.235 0.765 49 H 0.112 0.888 50 H 0.118 0.882 51 H 0.136 0.864 52 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges -15.176 9.258 32.069 36.666 hybrid contribution 0.142 -1.123 -1.091 1.572 sum -15.034 8.135 30.978 35.381 Atomic orbital electron populations 1.22429 0.96222 1.02233 1.02977 1.21859 0.93317 0.98330 0.89625 0.89443 1.21405 0.96247 0.99127 0.95894 1.19352 0.94174 0.95483 0.94427 1.21636 0.92487 1.33785 1.08676 0.95493 1.26027 1.00763 0.95873 0.96901 1.70090 1.15057 1.45833 1.28776 0.85609 0.77797 0.80189 0.78719 1.19744 1.21325 1.16629 1.64905 1.53974 1.01827 1.01289 1.23549 0.99774 0.90539 0.95282 1.21560 1.01511 0.97320 0.93709 1.21030 0.98285 0.95641 0.83685 0.92118 1.23298 0.98451 0.96227 0.89745 0.91028 1.22300 1.02100 0.97938 0.92344 1.23371 1.02596 0.78223 0.97736 1.47412 1.61177 1.10332 1.14228 1.17228 0.75670 0.85152 0.82103 1.90754 1.55622 1.17190 1.83351 1.20143 1.21635 0.95056 0.96106 1.24968 0.96700 0.95276 0.94131 1.77170 1.21526 1.05790 1.09938 1.48811 1.47750 1.04407 1.12921 1.22403 1.01588 1.06019 0.75351 1.23292 0.94418 0.96285 0.88110 0.90945 0.91190 0.92759 0.93757 0.92979 0.96871 0.95856 0.92772 0.91704 0.91493 0.91409 0.91595 0.89899 0.87497 0.87894 0.88343 0.76515 0.88839 0.88203 0.86440 0.77723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.20 8.46 71.98 0.61 -3.59 16 2 C 0.08 2.25 2.49 44.91 0.11 2.36 16 3 H 0.09 2.47 8.14 -2.38 -0.02 2.45 16 4 C -0.09 -3.44 4.52 30.60 0.14 -3.30 16 5 C 0.00 0.15 3.93 29.85 0.12 0.26 16 6 C -0.53 -31.34 9.66 25.60 0.25 -31.09 16 7 H 0.03 1.76 7.99 -2.91 -0.02 1.73 16 8 C 0.00 0.01 5.47 84.65 0.46 0.47 16 9 N -0.96 -61.83 13.96 21.45 0.30 -61.53 16 10 Si 0.95 46.15 27.47 68.60 1.88 48.04 16 11 H -0.27 -12.86 7.11 99.48 0.71 -12.15 16 12 H -0.29 -13.60 7.11 99.48 0.71 -12.90 16 13 H -0.24 -10.85 6.54 99.48 0.65 -10.20 16 14 N -0.50 -14.36 4.79 -828.99 -3.97 -18.33 16 15 C 0.04 1.06 5.17 86.48 0.45 1.51 16 16 C -0.10 -2.84 5.95 30.51 0.18 -2.66 16 17 C 0.12 3.04 3.00 46.42 0.14 3.18 16 18 H 0.06 1.73 8.05 -2.39 -0.02 1.71 16 19 C 0.03 0.74 2.38 46.55 0.11 0.85 16 20 H 0.07 1.54 5.62 -2.39 -0.01 1.53 16 21 C -0.11 -1.72 6.81 31.37 0.21 -1.51 16 22 C 0.10 1.34 5.11 86.93 0.44 1.78 16 23 N -0.60 -12.98 3.22 -792.43 -2.55 -15.53 16 24 C 0.61 15.06 7.86 86.66 0.68 15.74 16 25 O -0.59 -18.81 16.50 -4.05 -0.07 -18.87 16 26 C -0.31 -6.04 6.10 -20.15 -0.12 -6.16 16 27 C 0.08 1.19 10.62 85.65 0.91 2.10 16 28 N -0.32 -5.57 12.50 -56.27 -0.70 -6.27 16 29 N -0.36 -4.74 3.98 -367.79 -1.46 -6.21 16 30 C 0.09 0.31 11.44 127.77 1.46 1.77 16 31 C 0.13 2.01 11.30 84.28 0.95 2.97 16 32 H 0.07 1.43 5.85 -2.38 -0.01 1.42 16 33 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 34 H 0.05 1.32 6.15 -2.38 -0.01 1.30 16 35 H 0.04 1.78 6.96 -2.39 -0.02 1.76 16 36 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 37 H 0.01 0.61 7.20 -2.39 -0.02 0.60 16 38 H 0.02 1.12 7.18 -2.38 -0.02 1.10 16 39 H 0.26 15.92 8.31 -92.71 -0.77 15.15 16 40 H 0.06 1.81 5.49 -2.39 -0.01 1.79 16 41 H 0.07 2.26 8.10 -2.38 -0.02 2.24 16 42 H 0.07 1.98 8.14 -2.39 -0.02 1.97 16 43 H 0.07 1.87 8.06 -2.39 -0.02 1.85 16 44 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 45 H 0.11 1.22 8.14 -2.39 -0.02 1.20 16 46 H 0.10 0.88 6.64 -2.39 -0.02 0.86 16 47 H 0.10 0.95 7.43 -2.39 -0.02 0.93 16 48 H 0.22 2.07 4.57 -2.91 -0.01 2.06 16 49 H 0.09 0.13 8.14 -2.39 -0.02 0.12 16 50 H 0.10 0.27 8.14 -2.39 -0.02 0.25 16 51 H 0.12 -0.16 8.14 -2.39 -0.02 -0.18 16 52 H 0.21 2.22 8.06 -2.91 -0.02 2.19 16 Total: -1.00 -81.66 398.36 1.40 -80.26 By element: Atomic # 1 Polarization: 12.91 SS G_CDS: 0.86 Total: 13.77 kcal Atomic # 6 Polarization: -22.44 SS G_CDS: 7.10 Total: -15.34 kcal Atomic # 7 Polarization: -99.48 SS G_CDS: -8.39 Total: -107.87 kcal Atomic # 8 Polarization: -18.81 SS G_CDS: -0.07 Total: -18.87 kcal Atomic # 14 Polarization: 46.15 SS G_CDS: 1.88 Total: 48.04 kcal Total: -81.66 1.40 -80.26 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172494828.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.782 kcal (2) G-P(sol) polarization free energy of solvation -81.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.264 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds