Wall clock time and date at job start Wed Apr 1 2020 04:42:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.46580 * 2 1 4 4 C 1.52992 * 109.47279 * 239.99696 * 2 1 3 5 5 C 1.52997 * 109.47482 * 65.00040 * 4 2 1 6 6 C 1.50701 * 109.47212 * 179.97438 * 5 4 2 7 7 H 1.07998 * 120.00129 * 0.02562 * 6 5 4 8 8 C 1.37880 * 119.99861 * 179.97438 * 6 5 4 9 9 N 1.31510 * 119.99913 * 0.02562 * 8 6 5 10 10 Si 1.86797 * 119.99734 * 180.02562 * 8 6 5 11 11 H 1.48502 * 109.47432 * 0.02562 * 10 8 6 12 12 H 1.48506 * 109.46890 * 120.00210 * 10 8 6 13 13 H 1.48501 * 109.47062 * 240.00257 * 10 8 6 14 14 N 1.46499 * 109.46700 * 119.99201 * 2 1 3 15 15 N 1.28927 * 124.98264 * 60.02958 * 14 2 1 16 16 C 1.32289 * 110.17005 * 179.87382 * 15 14 2 17 17 C 1.47707 * 126.69707 * 179.97438 * 16 15 14 18 18 O 1.21571 * 119.99774 * 179.97438 * 17 16 15 19 19 N 1.34775 * 120.00218 * 359.97351 * 17 16 15 20 20 C 1.47020 * 125.64681 * 359.69578 * 19 17 16 21 21 C 1.54315 * 107.27551 * 180.96752 * 20 19 17 22 22 C 1.55158 * 102.86349 * 22.52656 * 21 20 19 23 23 C 1.47426 * 125.64870 * 180.02562 * 19 17 16 24 24 C 1.40217 * 106.60462 * 359.97438 * 16 15 14 25 25 C 1.34116 * 124.98504 * 239.72112 * 14 2 1 26 26 C 1.50687 * 129.65864 * 0.98399 * 25 14 2 27 27 N 1.47330 * 108.27264 * 162.99106 * 26 25 14 28 28 C 1.46939 * 111.63154 * 51.20510 * 27 26 25 29 29 C 1.50421 * 130.32245 * 180.23929 * 24 16 15 30 30 H 1.09001 * 109.46924 * 60.00575 * 1 2 3 31 31 H 1.09000 * 109.47104 * 179.97438 * 1 2 3 32 32 H 1.08993 * 109.47832 * 300.00368 * 1 2 3 33 33 H 1.09002 * 109.47103 * 304.99792 * 4 2 1 34 34 H 1.08998 * 109.46862 * 185.00605 * 4 2 1 35 35 H 1.09002 * 109.47153 * 59.99783 * 5 4 2 36 36 H 1.09001 * 109.46832 * 299.99974 * 5 4 2 37 37 H 0.97002 * 119.99768 * 179.97438 * 9 8 6 38 38 H 1.09005 * 109.87726 * 300.51036 * 20 19 17 39 39 H 1.08995 * 109.88242 * 61.67384 * 20 19 17 40 40 H 1.08996 * 110.92371 * 264.10706 * 21 20 19 41 41 H 1.09000 * 110.59145 * 140.78274 * 21 20 19 42 42 H 1.08994 * 111.00468 * 206.23167 * 22 21 20 43 43 H 1.08999 * 111.03896 * 82.39211 * 22 21 20 44 44 H 1.08998 * 110.36537 * 274.67795 * 23 19 17 45 45 H 1.09001 * 110.36617 * 36.88612 * 23 19 17 46 46 H 1.08996 * 109.85348 * 43.19707 * 26 25 14 47 47 H 1.08991 * 109.51985 * 282.59164 * 26 25 14 48 48 H 1.00901 * 111.00295 * 286.79581 * 27 26 25 49 49 H 1.08996 * 109.44611 * 168.59868 * 28 27 26 50 50 H 1.09005 * 109.44206 * 48.70567 * 28 27 26 51 51 H 1.09001 * 109.80811 * 283.97860 * 29 24 16 52 52 H 1.08999 * 109.80624 * 44.86037 * 29 24 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2491 5 6 1.6353 0.0688 -2.4953 6 6 2.1383 -0.6414 -3.7256 7 1 2.6909 -1.5642 -3.6285 8 6 1.8920 -0.1136 -4.9754 9 7 1.2186 1.0098 -5.0936 10 14 2.5148 -0.9943 -6.5004 11 1 3.2376 -2.2280 -6.0992 12 1 1.3648 -1.3550 -7.3681 13 1 3.4366 -0.1005 -7.2464 14 7 2.0182 -0.6905 1.1963 15 7 1.7671 -1.9193 1.4948 16 6 2.3548 -2.2409 2.6354 17 6 2.3074 -3.5522 3.3138 18 8 2.8969 -3.7146 4.3645 19 7 1.6107 -4.5686 2.7679 20 6 0.8503 -4.5084 1.5110 21 6 0.2023 -5.8931 1.3008 22 6 0.1628 -6.4777 2.7374 23 6 1.4794 -5.9228 3.3356 24 6 3.0315 -1.0942 3.0748 25 6 2.7969 -0.1387 2.1386 26 6 3.3384 1.2639 2.2387 27 7 3.7816 1.4902 3.6254 28 6 4.6764 0.4210 4.0894 29 6 3.8718 -0.8702 4.3022 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8899 33 1 1.6054 -1.7199 -1.2950 34 1 3.1263 -0.7995 -1.2053 35 1 2.0699 1.0673 -2.4494 36 1 0.5490 0.1469 -2.5390 37 1 1.0457 1.3813 -5.9728 38 1 0.0780 -3.7424 1.5814 39 1 1.5217 -4.2857 0.6818 40 1 0.8153 -6.5147 0.6482 41 1 -0.8056 -5.7877 0.8995 42 1 0.1720 -7.5674 2.7162 43 1 -0.7025 -6.1070 3.2871 44 1 2.3235 -6.5435 3.0353 45 1 1.4132 -5.8737 4.4225 46 1 2.5592 1.9809 1.9801 47 1 4.1833 1.3774 1.5596 48 1 2.9920 1.5950 4.2448 49 1 5.1404 0.7187 5.0297 50 1 5.4510 0.2465 3.3425 51 1 3.2287 -0.7641 5.1758 52 1 4.5515 -1.7106 4.4428 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172495998.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:42:18 Heat of formation + Delta-G solvation = 31.130651 kcal Electronic energy + Delta-G solvation = -31598.129049 eV Core-core repulsion = 27598.350857 eV Total energy + Delta-G solvation = -3999.778192 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.80112 -39.77733 -37.70616 -37.26843 -36.05479 -33.23710 -32.03537 -31.69742 -30.38594 -29.93897 -29.20184 -28.52867 -25.69568 -24.90765 -24.37903 -23.31874 -22.75341 -21.48463 -21.23673 -19.87397 -19.50110 -18.93717 -17.13773 -16.77394 -16.68425 -16.18945 -15.97969 -15.52930 -15.13395 -14.86116 -14.56459 -14.43337 -14.26532 -13.67068 -13.64340 -13.48276 -13.27465 -13.12000 -12.98123 -12.76382 -12.67025 -12.39518 -12.32427 -12.13265 -11.65024 -11.54578 -11.48034 -11.43130 -11.38670 -11.13618 -10.98110 -10.92124 -10.80927 -10.64239 -10.45728 -10.08715 -9.94041 -9.67070 -9.29455 -8.91506 -8.82207 -8.69063 -8.47053 -8.43537 -6.12754 -4.15247 1.71749 2.11885 2.55486 2.98339 3.23878 3.32146 3.36249 3.48471 4.04085 4.21973 4.36386 4.44586 4.49313 4.60928 4.73925 4.84713 4.91609 5.03823 5.04704 5.16028 5.17458 5.20596 5.24198 5.33850 5.37759 5.44322 5.48834 5.53778 5.56842 5.69278 5.77781 5.80437 5.80895 5.87097 5.91648 5.93167 5.95846 6.01286 6.15812 6.24919 6.27426 6.33489 6.46034 6.56176 6.70144 6.80840 7.01336 7.13268 7.43071 7.47814 7.58105 7.84947 7.99492 8.26481 8.26684 8.90543 9.49808 10.98437 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.008294 B = 0.003534 C = 0.002678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3374.943706 B = 7920.391363 C =10451.950006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.139 3.861 3 H 0.105 0.895 4 C -0.114 4.114 5 C 0.026 3.974 6 C -0.522 4.522 7 H 0.056 0.944 8 C 0.059 3.941 9 N -0.894 5.894 10 Si 0.892 3.108 11 H -0.273 1.273 12 H -0.283 1.283 13 H -0.283 1.283 14 N -0.244 5.244 15 N -0.248 5.248 16 C -0.023 4.023 17 C 0.624 3.376 18 O -0.540 6.540 19 N -0.611 5.611 20 C 0.109 3.891 21 C -0.134 4.134 22 C -0.134 4.134 23 C 0.107 3.893 24 C -0.158 4.158 25 C -0.032 4.032 26 C 0.131 3.869 27 N -0.673 5.673 28 C 0.055 3.945 29 C -0.073 4.073 30 H 0.092 0.908 31 H 0.068 0.932 32 H 0.050 0.950 33 H 0.065 0.935 34 H 0.054 0.946 35 H 0.018 0.982 36 H 0.025 0.975 37 H 0.261 0.739 38 H 0.074 0.926 39 H 0.076 0.924 40 H 0.077 0.923 41 H 0.083 0.917 42 H 0.083 0.917 43 H 0.075 0.925 44 H 0.068 0.932 45 H 0.078 0.922 46 H 0.090 0.910 47 H 0.095 0.905 48 H 0.345 0.655 49 H 0.083 0.917 50 H 0.075 0.925 51 H 0.072 0.928 52 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.115 -6.435 17.890 19.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.040 3.960 3 H 0.123 0.877 4 C -0.152 4.152 5 C -0.012 4.012 6 C -0.560 4.560 7 H 0.074 0.926 8 C -0.142 4.142 9 N -0.533 5.533 10 Si 0.719 3.281 11 H -0.197 1.197 12 H -0.209 1.209 13 H -0.209 1.209 14 N -0.031 5.031 15 N -0.085 5.085 16 C -0.179 4.179 17 C 0.412 3.588 18 O -0.416 6.416 19 N -0.345 5.345 20 C -0.014 4.014 21 C -0.172 4.172 22 C -0.172 4.172 23 C -0.016 4.016 24 C -0.169 4.169 25 C -0.160 4.160 26 C -0.001 4.001 27 N -0.300 5.300 28 C -0.075 4.075 29 C -0.112 4.112 30 H 0.111 0.889 31 H 0.087 0.913 32 H 0.069 0.931 33 H 0.084 0.916 34 H 0.073 0.927 35 H 0.036 0.964 36 H 0.043 0.957 37 H 0.071 0.929 38 H 0.093 0.907 39 H 0.095 0.905 40 H 0.095 0.905 41 H 0.101 0.899 42 H 0.102 0.898 43 H 0.094 0.906 44 H 0.086 0.914 45 H 0.096 0.904 46 H 0.109 0.891 47 H 0.113 0.887 48 H 0.162 0.838 49 H 0.101 0.899 50 H 0.094 0.906 51 H 0.090 0.910 52 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -1.017 -6.277 17.221 18.357 hybrid contribution 0.062 -0.926 -0.450 1.032 sum -0.955 -7.204 16.770 18.277 Atomic orbital electron populations 1.22140 0.92708 1.03674 1.02928 1.22122 0.96288 0.96018 0.81582 0.87699 1.22031 1.00222 1.00246 0.92710 1.19139 0.97193 0.95019 0.89834 1.21185 1.35330 1.08581 0.90890 0.92622 1.24985 0.95099 0.94965 0.99159 1.69951 1.40196 1.19403 1.23734 0.86538 0.78685 0.79799 0.83032 1.19729 1.20911 1.20920 1.45805 1.32920 1.06812 1.17575 1.73914 1.21588 0.98034 1.14959 1.21156 1.05567 0.95481 0.95727 1.16509 0.77947 0.81106 0.83259 1.90750 1.45623 1.82651 1.22543 1.48274 1.50367 1.11239 1.24587 1.22068 0.95773 0.97470 0.86050 1.22691 1.01801 0.95773 0.96961 1.22787 0.97287 1.00864 0.96221 1.22215 0.97541 0.82601 0.99200 1.19718 1.05365 0.92111 0.99678 1.22214 1.01375 0.99837 0.92602 1.20689 0.99824 0.87786 0.91779 1.60791 1.22074 1.44583 1.02601 1.22211 0.95409 0.88537 1.01320 1.20666 0.97550 0.99310 0.93718 0.88948 0.91280 0.93056 0.91620 0.92737 0.96374 0.95726 0.92913 0.90733 0.90520 0.90462 0.89862 0.89813 0.90634 0.91406 0.90404 0.89148 0.88691 0.83794 0.89883 0.90616 0.90967 0.89704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.25 9.13 37.16 0.34 -1.91 16 2 C 0.14 2.15 3.06 -67.93 -0.21 1.94 16 3 H 0.11 1.48 7.26 -51.93 -0.38 1.10 16 4 C -0.11 -2.17 4.80 -26.74 -0.13 -2.30 16 5 C 0.03 0.60 4.73 -27.88 -0.13 0.47 16 6 C -0.52 -13.99 9.11 -34.44 -0.31 -14.30 16 7 H 0.06 1.49 7.74 -52.49 -0.41 1.08 16 8 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 9 N -0.89 -25.47 13.29 55.43 0.74 -24.73 16 10 Si 0.89 20.96 29.54 -169.99 -5.02 15.93 16 11 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 12 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 13 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 14 N -0.24 -3.77 3.03 -50.77 -0.15 -3.92 16 15 N -0.25 -4.03 9.24 33.24 0.31 -3.73 16 16 C -0.02 -0.37 6.96 -83.06 -0.58 -0.95 16 17 C 0.62 10.15 7.86 -12.39 -0.10 10.05 16 18 O -0.54 -9.68 16.21 5.30 0.09 -9.60 16 19 N -0.61 -8.31 3.33 -171.70 -0.57 -8.88 16 20 C 0.11 1.33 5.54 -3.07 -0.02 1.32 16 21 C -0.13 -1.20 6.95 -24.90 -0.17 -1.37 16 22 C -0.13 -1.06 7.08 -24.59 -0.17 -1.24 16 23 C 0.11 1.13 6.91 -2.54 -0.02 1.11 16 24 C -0.16 -2.37 6.06 -104.89 -0.64 -3.01 16 25 C -0.03 -0.45 6.79 -82.47 -0.56 -1.01 16 26 C 0.13 1.49 6.30 -4.75 -0.03 1.46 16 27 N -0.67 -6.95 6.86 -114.36 -0.78 -7.74 16 28 C 0.05 0.56 6.55 -3.48 -0.02 0.54 16 29 C -0.07 -0.91 5.70 -27.70 -0.16 -1.06 16 30 H 0.09 1.38 6.56 -51.93 -0.34 1.04 16 31 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 32 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.07 1.30 8.14 -51.93 -0.42 0.87 16 34 H 0.05 1.09 8.14 -51.93 -0.42 0.66 16 35 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.02 0.59 6.56 -51.93 -0.34 0.25 16 37 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 38 H 0.07 0.96 7.68 -51.93 -0.40 0.57 16 39 H 0.08 1.06 7.76 -51.93 -0.40 0.66 16 40 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 43 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 44 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 45 H 0.08 0.84 8.03 -51.93 -0.42 0.43 16 46 H 0.09 0.91 7.91 -51.93 -0.41 0.50 16 47 H 0.10 1.10 8.14 -51.93 -0.42 0.68 16 48 H 0.34 3.23 8.79 -39.29 -0.35 2.89 16 49 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 50 H 0.08 0.83 8.08 -51.93 -0.42 0.41 16 51 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 52 H 0.08 1.14 7.80 -51.93 -0.41 0.73 16 LS Contribution 410.11 15.07 6.18 6.18 Total: -1.00 -31.28 410.11 -11.12 -42.40 By element: Atomic # 1 Polarization: 11.70 SS G_CDS: -8.90 Total: 2.80 kcal Atomic # 6 Polarization: -5.72 SS G_CDS: -3.00 Total: -8.72 kcal Atomic # 7 Polarization: -48.53 SS G_CDS: -0.47 Total: -49.00 kcal Atomic # 8 Polarization: -9.68 SS G_CDS: 0.09 Total: -9.60 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.93 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -31.28 -11.12 -42.40 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172495998.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.527 kcal (2) G-P(sol) polarization free energy of solvation -31.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.396 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds