Wall clock time and date at job start Wed Apr 1 2020 04:42:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.46580 * 2 1 4 4 C 1.52992 * 109.47279 * 239.99696 * 2 1 3 5 5 C 1.52997 * 109.47482 * 65.00040 * 4 2 1 6 6 C 1.50701 * 109.47212 * 179.97438 * 5 4 2 7 7 H 1.07998 * 120.00129 * 0.02562 * 6 5 4 8 8 C 1.37880 * 119.99861 * 179.97438 * 6 5 4 9 9 N 1.31510 * 119.99913 * 0.02562 * 8 6 5 10 10 Si 1.86797 * 119.99734 * 180.02562 * 8 6 5 11 11 H 1.48502 * 109.47432 * 0.02562 * 10 8 6 12 12 H 1.48506 * 109.46890 * 120.00210 * 10 8 6 13 13 H 1.48501 * 109.47062 * 240.00257 * 10 8 6 14 14 N 1.46499 * 109.46700 * 119.99201 * 2 1 3 15 15 N 1.28927 * 124.98264 * 60.02958 * 14 2 1 16 16 C 1.32289 * 110.17005 * 179.87382 * 15 14 2 17 17 C 1.47707 * 126.69707 * 179.97438 * 16 15 14 18 18 O 1.21571 * 119.99774 * 179.97438 * 17 16 15 19 19 N 1.34775 * 120.00218 * 359.97351 * 17 16 15 20 20 C 1.47020 * 125.64681 * 359.69578 * 19 17 16 21 21 C 1.54315 * 107.27551 * 180.96752 * 20 19 17 22 22 C 1.55158 * 102.86349 * 22.52656 * 21 20 19 23 23 C 1.47426 * 125.64870 * 180.02562 * 19 17 16 24 24 C 1.40217 * 106.60462 * 359.97438 * 16 15 14 25 25 C 1.34116 * 124.98504 * 239.72112 * 14 2 1 26 26 C 1.50687 * 129.65864 * 0.98399 * 25 14 2 27 27 N 1.47330 * 108.27264 * 162.99106 * 26 25 14 28 28 C 1.46939 * 111.63154 * 51.20510 * 27 26 25 29 29 C 1.50421 * 130.32245 * 180.23929 * 24 16 15 30 30 H 1.09001 * 109.46924 * 60.00575 * 1 2 3 31 31 H 1.09000 * 109.47104 * 179.97438 * 1 2 3 32 32 H 1.08993 * 109.47832 * 300.00368 * 1 2 3 33 33 H 1.09002 * 109.47103 * 304.99792 * 4 2 1 34 34 H 1.08998 * 109.46862 * 185.00605 * 4 2 1 35 35 H 1.09002 * 109.47153 * 59.99783 * 5 4 2 36 36 H 1.09001 * 109.46832 * 299.99974 * 5 4 2 37 37 H 0.97002 * 119.99768 * 179.97438 * 9 8 6 38 38 H 1.09005 * 109.87726 * 300.51036 * 20 19 17 39 39 H 1.08995 * 109.88242 * 61.67384 * 20 19 17 40 40 H 1.08996 * 110.92371 * 264.10706 * 21 20 19 41 41 H 1.09000 * 110.59145 * 140.78274 * 21 20 19 42 42 H 1.08994 * 111.00468 * 206.23167 * 22 21 20 43 43 H 1.08999 * 111.03896 * 82.39211 * 22 21 20 44 44 H 1.08998 * 110.36537 * 274.67795 * 23 19 17 45 45 H 1.09001 * 110.36617 * 36.88612 * 23 19 17 46 46 H 1.08996 * 109.85348 * 43.19707 * 26 25 14 47 47 H 1.08991 * 109.51985 * 282.59164 * 26 25 14 48 48 H 1.00901 * 111.00295 * 286.79581 * 27 26 25 49 49 H 1.08996 * 109.44611 * 168.59868 * 28 27 26 50 50 H 1.09005 * 109.44206 * 48.70567 * 28 27 26 51 51 H 1.09001 * 109.80811 * 283.97860 * 29 24 16 52 52 H 1.08999 * 109.80624 * 44.86037 * 29 24 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2491 5 6 1.6353 0.0688 -2.4953 6 6 2.1383 -0.6414 -3.7256 7 1 2.6909 -1.5642 -3.6285 8 6 1.8920 -0.1136 -4.9754 9 7 1.2186 1.0098 -5.0936 10 14 2.5148 -0.9943 -6.5004 11 1 3.2376 -2.2280 -6.0992 12 1 1.3648 -1.3550 -7.3681 13 1 3.4366 -0.1005 -7.2464 14 7 2.0182 -0.6905 1.1963 15 7 1.7671 -1.9193 1.4948 16 6 2.3548 -2.2409 2.6354 17 6 2.3074 -3.5522 3.3138 18 8 2.8969 -3.7146 4.3645 19 7 1.6107 -4.5686 2.7679 20 6 0.8503 -4.5084 1.5110 21 6 0.2023 -5.8931 1.3008 22 6 0.1628 -6.4777 2.7374 23 6 1.4794 -5.9228 3.3356 24 6 3.0315 -1.0942 3.0748 25 6 2.7969 -0.1387 2.1386 26 6 3.3384 1.2639 2.2387 27 7 3.7816 1.4902 3.6254 28 6 4.6764 0.4210 4.0894 29 6 3.8718 -0.8702 4.3022 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8899 33 1 1.6054 -1.7199 -1.2950 34 1 3.1263 -0.7995 -1.2053 35 1 2.0699 1.0673 -2.4494 36 1 0.5490 0.1469 -2.5390 37 1 1.0457 1.3813 -5.9728 38 1 0.0780 -3.7424 1.5814 39 1 1.5217 -4.2857 0.6818 40 1 0.8153 -6.5147 0.6482 41 1 -0.8056 -5.7877 0.8995 42 1 0.1720 -7.5674 2.7162 43 1 -0.7025 -6.1070 3.2871 44 1 2.3235 -6.5435 3.0353 45 1 1.4132 -5.8737 4.4225 46 1 2.5592 1.9809 1.9801 47 1 4.1833 1.3774 1.5596 48 1 2.9920 1.5950 4.2448 49 1 5.1404 0.7187 5.0297 50 1 5.4510 0.2465 3.3425 51 1 3.2287 -0.7641 5.1758 52 1 4.5515 -1.7106 4.4428 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172495998.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:42:16 Heat of formation + Delta-G solvation = 12.202916 kcal Electronic energy + Delta-G solvation = -31598.949817 eV Core-core repulsion = 27598.350857 eV Total energy + Delta-G solvation = -4000.598960 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -43.97804 -40.87289 -38.72683 -38.29845 -37.46533 -35.07178 -33.33976 -32.72351 -31.45173 -31.29775 -30.28202 -29.66268 -27.29475 -26.22588 -25.38529 -24.54215 -23.77702 -22.95784 -22.07295 -21.16186 -20.63787 -20.06419 -18.71205 -18.08358 -17.73735 -17.45276 -17.12845 -16.67434 -16.39115 -16.34991 -15.92302 -15.70769 -15.37549 -14.77354 -14.60558 -14.54150 -14.39547 -14.21664 -14.09850 -14.07744 -13.84757 -13.80054 -13.40425 -13.29867 -13.18474 -12.98078 -12.64577 -12.60300 -12.48272 -12.31879 -12.19955 -12.17470 -12.04265 -11.77986 -11.64759 -11.57704 -11.50239 -11.29350 -11.24325 -10.55075 -10.19009 -9.82066 -9.70162 -9.55282 -8.22143 -6.31151 0.47666 0.97812 1.35513 1.37983 1.40494 1.51515 1.92024 2.25202 2.39692 3.12317 3.13492 3.18890 3.49629 3.55524 3.65534 3.77882 3.85702 3.88551 4.00305 4.03192 4.07298 4.15693 4.27935 4.35279 4.41608 4.45948 4.54355 4.58720 4.64968 4.66935 4.74955 4.83078 4.85735 4.87109 4.87834 4.90965 4.97312 5.03588 5.05002 5.06626 5.10808 5.15282 5.22039 5.33089 5.44976 5.47909 5.68643 5.79138 5.81269 5.85598 6.22940 6.29417 6.34241 6.79150 6.83214 7.05918 7.37625 8.89040 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.008294 B = 0.003534 C = 0.002678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3374.943706 B = 7920.391363 C =10451.950006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.147 3.853 3 H 0.124 0.876 4 C -0.096 4.096 5 C 0.033 3.967 6 C -0.543 4.543 7 H 0.050 0.950 8 C 0.010 3.990 9 N -0.924 5.924 10 Si 0.954 3.046 11 H -0.269 1.269 12 H -0.277 1.277 13 H -0.278 1.278 14 N -0.250 5.250 15 N -0.262 5.262 16 C -0.041 4.041 17 C 0.613 3.387 18 O -0.566 6.566 19 N -0.610 5.610 20 C 0.109 3.891 21 C -0.127 4.127 22 C -0.119 4.119 23 C 0.098 3.902 24 C -0.174 4.174 25 C -0.026 4.026 26 C 0.131 3.869 27 N -0.666 5.666 28 C 0.062 3.938 29 C -0.067 4.067 30 H 0.084 0.916 31 H 0.060 0.940 32 H 0.071 0.929 33 H 0.054 0.946 34 H 0.042 0.958 35 H 0.004 0.996 36 H 0.015 0.985 37 H 0.264 0.736 38 H 0.064 0.936 39 H 0.055 0.945 40 H 0.084 0.916 41 H 0.098 0.902 42 H 0.112 0.888 43 H 0.079 0.921 44 H 0.074 0.926 45 H 0.073 0.927 46 H 0.109 0.891 47 H 0.096 0.904 48 H 0.352 0.648 49 H 0.107 0.893 50 H 0.069 0.931 51 H 0.075 0.925 52 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.330 -6.760 18.286 19.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.048 3.952 3 H 0.142 0.858 4 C -0.135 4.135 5 C -0.004 4.004 6 C -0.581 4.581 7 H 0.068 0.932 8 C -0.188 4.188 9 N -0.564 5.564 10 Si 0.780 3.220 11 H -0.193 1.193 12 H -0.202 1.202 13 H -0.204 1.204 14 N -0.038 5.038 15 N -0.099 5.099 16 C -0.198 4.198 17 C 0.402 3.598 18 O -0.445 6.445 19 N -0.343 5.343 20 C -0.014 4.014 21 C -0.165 4.165 22 C -0.157 4.157 23 C -0.024 4.024 24 C -0.185 4.185 25 C -0.155 4.155 26 C 0.000 4.000 27 N -0.294 5.294 28 C -0.068 4.068 29 C -0.106 4.106 30 H 0.103 0.897 31 H 0.079 0.921 32 H 0.090 0.910 33 H 0.073 0.927 34 H 0.061 0.939 35 H 0.023 0.977 36 H 0.033 0.967 37 H 0.073 0.927 38 H 0.083 0.917 39 H 0.073 0.927 40 H 0.103 0.897 41 H 0.117 0.883 42 H 0.130 0.870 43 H 0.098 0.902 44 H 0.092 0.908 45 H 0.092 0.908 46 H 0.127 0.873 47 H 0.114 0.886 48 H 0.171 0.829 49 H 0.125 0.875 50 H 0.088 0.912 51 H 0.093 0.907 52 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -1.249 -6.625 17.615 18.861 hybrid contribution 0.136 -0.851 -0.558 1.026 sum -1.113 -7.475 17.057 18.656 Atomic orbital electron populations 1.22054 0.91732 1.03373 1.03518 1.21950 0.96982 0.96147 0.80120 0.85839 1.21696 0.99319 0.99415 0.93024 1.18975 0.96246 0.94469 0.90735 1.21594 1.35328 1.08670 0.92542 0.93206 1.25766 0.95280 0.95672 1.02130 1.70043 1.41190 1.20626 1.24590 0.85560 0.78300 0.78760 0.79418 1.19349 1.20225 1.20362 1.45771 1.33453 1.06794 1.17751 1.73898 1.22241 0.98558 1.15207 1.21444 1.06083 0.96205 0.96030 1.16665 0.78253 0.81731 0.83200 1.90714 1.46972 1.83198 1.23584 1.48440 1.49249 1.11803 1.24817 1.22100 0.94977 0.99551 0.84763 1.22702 1.02335 0.93570 0.97920 1.22780 0.95651 1.02370 0.94920 1.22479 0.99492 0.81254 0.99151 1.20125 1.05650 0.91864 1.00830 1.22721 1.00206 1.00940 0.91627 1.20862 1.00257 0.86378 0.92550 1.60821 1.22324 1.43986 1.02233 1.22207 0.94859 0.87394 1.02306 1.20676 0.97183 0.99996 0.92789 0.89699 0.92062 0.90973 0.92722 0.93900 0.97742 0.96670 0.92661 0.91728 0.92658 0.89684 0.88349 0.86973 0.90191 0.90809 0.90803 0.87323 0.88590 0.82909 0.87525 0.91211 0.90653 0.91093 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.18 9.13 71.98 0.66 -3.53 16 2 C 0.15 4.48 3.06 44.99 0.14 4.62 16 3 H 0.12 3.32 7.26 -2.39 -0.02 3.30 16 4 C -0.10 -3.72 4.80 30.59 0.15 -3.58 16 5 C 0.03 1.58 4.73 29.85 0.14 1.72 16 6 C -0.54 -29.49 9.11 25.60 0.23 -29.26 16 7 H 0.05 2.69 7.74 -2.91 -0.02 2.67 16 8 C 0.01 0.56 5.46 84.66 0.46 1.02 16 9 N -0.92 -52.92 13.29 21.45 0.28 -52.63 16 10 Si 0.95 42.91 29.54 68.60 2.03 44.94 16 11 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 12 H -0.28 -12.09 7.11 99.48 0.71 -11.39 16 13 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 14 N -0.25 -7.69 3.03 -314.55 -0.95 -8.64 16 15 N -0.26 -8.69 9.24 -48.76 -0.45 -9.14 16 16 C -0.04 -1.38 6.96 42.06 0.29 -1.08 16 17 C 0.61 20.56 7.86 86.75 0.68 21.24 16 18 O -0.57 -20.92 16.21 -3.94 -0.06 -20.99 16 19 N -0.61 -16.84 3.33 -815.41 -2.71 -19.55 16 20 C 0.11 2.68 5.54 86.73 0.48 3.16 16 21 C -0.13 -2.07 6.95 31.78 0.22 -1.85 16 22 C -0.12 -1.64 7.08 31.98 0.23 -1.41 16 23 C 0.10 2.00 6.91 86.85 0.60 2.60 16 24 C -0.17 -5.22 6.06 -20.04 -0.12 -5.34 16 25 C -0.03 -0.73 6.79 41.64 0.28 -0.45 16 26 C 0.13 2.76 6.30 85.47 0.54 3.29 16 27 N -0.67 -12.32 6.86 -515.71 -3.54 -15.86 16 28 C 0.06 1.18 6.55 86.50 0.57 1.74 16 29 C -0.07 -1.63 5.70 29.97 0.17 -1.46 16 30 H 0.08 2.52 6.56 -2.39 -0.02 2.51 16 31 H 0.06 1.80 8.14 -2.39 -0.02 1.79 16 32 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 33 H 0.05 2.22 8.14 -2.39 -0.02 2.20 16 34 H 0.04 1.73 8.14 -2.39 -0.02 1.72 16 35 H 0.00 0.21 8.14 -2.39 -0.02 0.19 16 36 H 0.02 0.74 6.56 -2.39 -0.02 0.72 16 37 H 0.26 14.26 8.31 -92.71 -0.77 13.49 16 38 H 0.06 1.71 7.68 -2.38 -0.02 1.69 16 39 H 0.05 1.59 7.76 -2.39 -0.02 1.57 16 40 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 41 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 42 H 0.11 0.97 8.14 -2.39 -0.02 0.95 16 43 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 44 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 45 H 0.07 1.58 8.03 -2.39 -0.02 1.56 16 46 H 0.11 1.91 7.91 -2.39 -0.02 1.89 16 47 H 0.10 2.05 8.14 -2.39 -0.02 2.03 16 48 H 0.35 5.78 8.79 -89.69 -0.79 4.99 16 49 H 0.11 1.55 8.14 -2.39 -0.02 1.54 16 50 H 0.07 1.43 8.08 -2.38 -0.02 1.41 16 51 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 52 H 0.07 1.94 7.80 -2.39 -0.02 1.92 16 Total: -1.00 -68.22 410.11 0.44 -67.78 By element: Atomic # 1 Polarization: 22.51 SS G_CDS: 0.13 Total: 22.63 kcal Atomic # 6 Polarization: -14.26 SS G_CDS: 5.72 Total: -8.55 kcal Atomic # 7 Polarization: -98.45 SS G_CDS: -7.37 Total: -105.82 kcal Atomic # 8 Polarization: -20.92 SS G_CDS: -0.06 Total: -20.99 kcal Atomic # 14 Polarization: 42.91 SS G_CDS: 2.03 Total: 44.94 kcal Total: -68.22 0.44 -67.78 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172495998.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.988 kcal (2) G-P(sol) polarization free energy of solvation -68.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.765 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.785 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds