Wall clock time and date at job start Wed Apr 1 2020 04:42:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.46580 * 2 1 4 4 C 1.52992 * 109.47279 * 239.99696 * 2 1 3 5 5 C 1.52997 * 109.47482 * 65.00040 * 4 2 1 6 6 C 1.50701 * 109.47212 * 179.97438 * 5 4 2 7 7 H 1.07998 * 120.00129 * 0.02562 * 6 5 4 8 8 C 1.37880 * 119.99861 * 179.97438 * 6 5 4 9 9 N 1.31510 * 119.99913 * 0.02562 * 8 6 5 10 10 Si 1.86797 * 119.99734 * 180.02562 * 8 6 5 11 11 H 1.48499 * 109.47094 * 90.00289 * 10 8 6 12 12 H 1.48505 * 109.47195 * 210.00171 * 10 8 6 13 13 H 1.48493 * 109.47449 * 330.00136 * 10 8 6 14 14 N 1.46499 * 109.46700 * 119.99201 * 2 1 3 15 15 N 1.28939 * 124.99764 * 60.03042 * 14 2 1 16 16 C 1.32280 * 110.16229 * 179.89694 * 15 14 2 17 17 C 1.47717 * 126.67611 * 179.97438 * 16 15 14 18 18 O 1.21574 * 119.99674 * 180.02562 * 17 16 15 19 19 N 1.34778 * 120.00101 * 0.02599 * 17 16 15 20 20 C 1.47020 * 125.64517 * 359.69234 * 19 17 16 21 21 C 1.54316 * 107.27483 * 180.96842 * 20 19 17 22 22 C 1.55158 * 102.86439 * 22.52402 * 21 20 19 23 23 C 1.47421 * 125.64928 * 179.97438 * 19 17 16 24 24 C 1.40293 * 106.64365 * 359.97438 * 16 15 14 25 25 C 1.34036 * 125.00109 * 239.72374 * 14 2 1 26 26 C 1.50767 * 129.79572 * 1.01463 * 25 14 2 27 27 C 1.53555 * 107.84720 * 163.55635 * 26 25 14 28 28 N 1.46937 * 109.79111 * 49.03555 * 27 26 25 29 29 C 1.47415 * 111.47645 * 288.65629 * 28 27 26 30 30 H 1.08993 * 109.47832 * 300.00368 * 1 2 3 31 31 H 1.09001 * 109.46924 * 60.00575 * 1 2 3 32 32 H 1.09000 * 109.47104 * 179.97438 * 1 2 3 33 33 H 1.09002 * 109.47103 * 304.99792 * 4 2 1 34 34 H 1.08998 * 109.46862 * 185.00605 * 4 2 1 35 35 H 1.09002 * 109.47153 * 59.99783 * 5 4 2 36 36 H 1.09001 * 109.46832 * 299.99974 * 5 4 2 37 37 H 0.97002 * 119.99768 * 179.97438 * 9 8 6 38 38 H 1.08997 * 109.88396 * 300.51385 * 20 19 17 39 39 H 1.09002 * 109.88250 * 61.67876 * 20 19 17 40 40 H 1.09001 * 110.92269 * 264.11388 * 21 20 19 41 41 H 1.08998 * 110.59414 * 140.78039 * 21 20 19 42 42 H 1.08994 * 111.00983 * 206.23434 * 22 21 20 43 43 H 1.09004 * 111.04027 * 82.39101 * 22 21 20 44 44 H 1.08997 * 110.37023 * 274.67547 * 23 19 17 45 45 H 1.09008 * 110.36318 * 36.88695 * 23 19 17 46 46 H 1.09000 * 109.94951 * 43.86303 * 26 25 14 47 47 H 1.08998 * 109.62892 * 283.06960 * 26 25 14 48 48 H 1.08999 * 109.42221 * 288.93375 * 27 26 25 49 49 H 1.09001 * 109.41876 * 169.12622 * 27 26 25 50 50 H 1.00902 * 111.00432 * 52.95391 * 28 27 26 51 51 H 1.08995 * 109.72015 * 291.19833 * 29 28 27 52 52 H 1.09000 * 109.75782 * 170.55838 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2491 5 6 1.6353 0.0688 -2.4953 6 6 2.1383 -0.6414 -3.7256 7 1 2.6909 -1.5642 -3.6285 8 6 1.8920 -0.1136 -4.9754 9 7 1.2186 1.0098 -5.0936 10 14 2.5148 -0.9943 -6.5004 11 1 1.4837 -1.9520 -6.9748 12 1 2.7945 0.0004 -7.5670 13 1 3.7613 -1.7315 -6.1720 14 7 2.0182 -0.6905 1.1963 15 7 1.7672 -1.9194 1.4951 16 6 2.3547 -2.2404 2.6360 17 6 2.3072 -3.5516 3.3144 18 8 2.8956 -3.7136 4.3660 19 7 1.6117 -4.5685 2.7678 20 6 0.8527 -4.5088 1.5101 21 6 0.2057 -5.8938 1.2992 22 6 0.1649 -6.4784 2.7358 23 6 1.4813 -5.9230 3.3350 24 6 3.0316 -1.0931 3.0761 25 6 2.7964 -0.1394 2.1383 26 6 3.3395 1.2632 2.2422 27 6 3.8107 1.4796 3.6875 28 7 4.6597 0.3562 4.1075 29 6 3.8700 -0.8729 4.3044 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3633 -1.0277 -0.0005 33 1 1.6054 -1.7199 -1.2950 34 1 3.1263 -0.7995 -1.2053 35 1 2.0699 1.0673 -2.4494 36 1 0.5490 0.1469 -2.5390 37 1 1.0457 1.3813 -5.9728 38 1 0.0800 -3.7433 1.5794 39 1 1.5251 -4.2859 0.6816 40 1 0.8199 -6.5152 0.6474 41 1 -0.8018 -5.7891 0.8967 42 1 0.1747 -7.5681 2.7148 43 1 -0.7012 -6.1082 3.2845 44 1 2.3261 -6.5429 3.0349 45 1 1.4145 -5.8743 4.4219 46 1 2.5590 1.9834 1.9967 47 1 4.1798 1.3821 1.5582 48 1 2.9441 1.5446 4.3454 49 1 4.3807 2.4068 3.7479 50 1 5.4087 0.2031 3.4490 51 1 3.2245 -0.7597 5.1753 52 1 4.5389 -1.7212 4.4500 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172496759.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:42:28 Heat of formation + Delta-G solvation = 12.325804 kcal Electronic energy + Delta-G solvation = -31598.919682 eV Core-core repulsion = 27598.326051 eV Total energy + Delta-G solvation = -4000.593631 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -43.98939 -40.85856 -38.72965 -38.26989 -37.46034 -35.07455 -33.39577 -32.60603 -31.78651 -30.97893 -30.34184 -29.65664 -27.31531 -26.25298 -25.44405 -24.35329 -23.81105 -22.99258 -22.05834 -21.16656 -20.68897 -20.06585 -18.73222 -18.15826 -17.70053 -17.45722 -17.03480 -16.53708 -16.37449 -16.29344 -15.97365 -15.67512 -15.36705 -14.76588 -14.68027 -14.55155 -14.47855 -14.25402 -14.14507 -14.05499 -13.83185 -13.74678 -13.41557 -13.28559 -13.23546 -12.97756 -12.64703 -12.59968 -12.49539 -12.31589 -12.21656 -12.17279 -12.00676 -11.80847 -11.64597 -11.62330 -11.52229 -11.28334 -11.25968 -10.56214 -10.19441 -9.80746 -9.64563 -9.53613 -8.23448 -6.32823 0.47942 0.97634 1.34219 1.38483 1.39687 1.49736 1.92842 2.25865 2.38655 3.10692 3.11177 3.32624 3.43756 3.50594 3.66396 3.77617 3.82860 3.90657 3.99811 4.03892 4.05860 4.18822 4.29112 4.32107 4.45186 4.47195 4.56389 4.59530 4.64891 4.66999 4.71878 4.74065 4.85422 4.87742 4.88295 4.90517 4.96609 4.98751 5.01847 5.07419 5.10621 5.14582 5.22815 5.32025 5.42130 5.45623 5.65909 5.78576 5.82379 5.93987 6.21036 6.30737 6.39110 6.79143 6.81258 7.06619 7.36054 8.87575 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.008308 B = 0.003530 C = 0.002678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3369.279293 B = 7930.727873 C =10454.514632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.148 3.852 3 H 0.121 0.879 4 C -0.095 4.095 5 C 0.034 3.966 6 C -0.545 4.545 7 H 0.050 0.950 8 C 0.010 3.990 9 N -0.925 5.925 10 Si 0.955 3.045 11 H -0.272 1.272 12 H -0.280 1.280 13 H -0.270 1.270 14 N -0.255 5.255 15 N -0.263 5.263 16 C -0.034 4.034 17 C 0.614 3.386 18 O -0.564 6.564 19 N -0.610 5.610 20 C 0.109 3.891 21 C -0.127 4.127 22 C -0.120 4.120 23 C 0.098 3.902 24 C -0.208 4.208 25 C 0.009 3.991 26 C -0.086 4.086 27 C 0.068 3.932 28 N -0.681 5.681 29 C 0.149 3.851 30 H 0.070 0.930 31 H 0.084 0.916 32 H 0.061 0.939 33 H 0.055 0.945 34 H 0.042 0.958 35 H 0.003 0.997 36 H 0.014 0.986 37 H 0.265 0.735 38 H 0.064 0.936 39 H 0.055 0.945 40 H 0.085 0.915 41 H 0.097 0.903 42 H 0.112 0.888 43 H 0.079 0.921 44 H 0.074 0.926 45 H 0.074 0.926 46 H 0.101 0.899 47 H 0.092 0.908 48 H 0.075 0.925 49 H 0.113 0.887 50 H 0.348 0.652 51 H 0.079 0.921 52 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.023 -6.166 17.148 18.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.049 3.951 3 H 0.139 0.861 4 C -0.134 4.134 5 C -0.004 4.004 6 C -0.583 4.583 7 H 0.068 0.932 8 C -0.188 4.188 9 N -0.565 5.565 10 Si 0.780 3.220 11 H -0.198 1.198 12 H -0.206 1.206 13 H -0.194 1.194 14 N -0.041 5.041 15 N -0.100 5.100 16 C -0.192 4.192 17 C 0.402 3.598 18 O -0.442 6.442 19 N -0.343 5.343 20 C -0.014 4.014 21 C -0.165 4.165 22 C -0.157 4.157 23 C -0.024 4.024 24 C -0.220 4.220 25 C -0.118 4.118 26 C -0.126 4.126 27 C -0.062 4.062 28 N -0.309 5.309 29 C 0.019 3.981 30 H 0.089 0.911 31 H 0.103 0.897 32 H 0.080 0.920 33 H 0.073 0.927 34 H 0.061 0.939 35 H 0.021 0.979 36 H 0.033 0.967 37 H 0.074 0.926 38 H 0.082 0.918 39 H 0.074 0.926 40 H 0.103 0.897 41 H 0.116 0.884 42 H 0.130 0.870 43 H 0.098 0.902 44 H 0.093 0.907 45 H 0.093 0.907 46 H 0.119 0.881 47 H 0.110 0.890 48 H 0.093 0.907 49 H 0.131 0.869 50 H 0.165 0.835 51 H 0.097 0.903 52 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -1.475 -6.286 17.335 18.498 hybrid contribution 0.481 -0.260 -1.654 1.742 sum -0.994 -6.546 15.680 17.021 Atomic orbital electron populations 1.22053 0.91775 1.03414 1.03444 1.21913 0.96950 0.96063 0.80220 0.86147 1.21691 0.99268 0.99441 0.92982 1.18966 0.96208 0.94413 0.90777 1.21562 1.35485 1.08717 0.92521 0.93155 1.25776 0.95252 0.95649 1.02159 1.70037 1.41150 1.20601 1.24677 0.85600 0.78913 0.78459 0.79027 1.19778 1.20560 1.19437 1.45768 1.33680 1.06900 1.17783 1.73912 1.22288 0.98401 1.15386 1.21450 1.05760 0.96126 0.95827 1.16650 0.78295 0.81674 0.83222 1.90725 1.46906 1.83164 1.23422 1.48430 1.49320 1.11786 1.24747 1.22096 0.95002 0.99523 0.84772 1.22701 1.02308 0.93585 0.97943 1.22788 0.95704 1.02357 0.94899 1.22490 0.99459 0.81215 0.99200 1.21003 1.07006 0.92213 1.01812 1.21601 0.99701 0.99286 0.91180 1.21224 1.01852 0.88029 1.01501 1.22170 0.97692 0.95099 0.91219 1.60801 1.12759 1.04897 1.52433 1.20255 0.93847 0.92316 0.91707 0.91086 0.89726 0.91971 0.92653 0.93941 0.97869 0.96731 0.92633 0.91780 0.92649 0.89674 0.88416 0.86996 0.90211 0.90748 0.90735 0.88056 0.88961 0.90684 0.86881 0.83457 0.90265 0.90373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.26 9.13 71.98 0.66 -3.60 16 2 C 0.15 4.56 3.06 44.99 0.14 4.69 16 3 H 0.12 3.32 7.30 -2.39 -0.02 3.30 16 4 C -0.10 -3.71 4.80 30.59 0.15 -3.56 16 5 C 0.03 1.61 4.73 29.85 0.14 1.76 16 6 C -0.54 -29.55 9.11 25.60 0.23 -29.31 16 7 H 0.05 2.71 7.74 -2.91 -0.02 2.69 16 8 C 0.01 0.57 5.46 84.66 0.46 1.03 16 9 N -0.92 -52.91 13.29 21.45 0.28 -52.62 16 10 Si 0.95 42.76 29.54 68.60 2.03 44.79 16 11 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 12 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 13 H -0.27 -11.80 7.11 99.48 0.71 -11.10 16 14 N -0.25 -7.88 3.02 -314.52 -0.95 -8.83 16 15 N -0.26 -8.74 9.24 -48.71 -0.45 -9.19 16 16 C -0.03 -1.14 6.96 42.08 0.29 -0.84 16 17 C 0.61 20.36 7.86 86.75 0.68 21.04 16 18 O -0.56 -20.61 16.16 -3.95 -0.06 -20.67 16 19 N -0.61 -16.68 3.33 -815.31 -2.71 -19.39 16 20 C 0.11 2.67 5.54 86.73 0.48 3.15 16 21 C -0.13 -2.06 6.95 31.78 0.22 -1.84 16 22 C -0.12 -1.64 7.08 31.99 0.23 -1.41 16 23 C 0.10 1.98 6.91 86.86 0.60 2.58 16 24 C -0.21 -6.25 6.07 -20.04 -0.12 -6.38 16 25 C 0.01 0.26 6.78 41.68 0.28 0.54 16 26 C -0.09 -1.67 5.77 30.06 0.17 -1.50 16 27 C 0.07 1.16 6.53 86.48 0.56 1.73 16 28 N -0.68 -14.14 6.88 -516.21 -3.55 -17.69 16 29 C 0.15 3.91 6.23 85.34 0.53 4.44 16 30 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 31 H 0.08 2.55 6.56 -2.39 -0.02 2.53 16 32 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 33 H 0.05 2.25 8.14 -2.39 -0.02 2.23 16 34 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 35 H 0.00 0.15 8.14 -2.39 -0.02 0.13 16 36 H 0.01 0.71 6.56 -2.39 -0.02 0.70 16 37 H 0.26 14.30 8.31 -92.71 -0.77 13.52 16 38 H 0.06 1.69 7.68 -2.39 -0.02 1.68 16 39 H 0.06 1.58 7.76 -2.39 -0.02 1.56 16 40 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 41 H 0.10 1.33 8.14 -2.39 -0.02 1.32 16 42 H 0.11 0.96 8.14 -2.39 -0.02 0.95 16 43 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 44 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 45 H 0.07 1.58 8.03 -2.38 -0.02 1.56 16 46 H 0.10 1.69 7.95 -2.39 -0.02 1.67 16 47 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 48 H 0.07 1.32 8.07 -2.39 -0.02 1.30 16 49 H 0.11 1.38 8.14 -2.39 -0.02 1.36 16 50 H 0.35 6.80 8.79 -89.69 -0.79 6.01 16 51 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 52 H 0.08 2.23 7.75 -2.39 -0.02 2.21 16 Total: -1.00 -67.82 410.09 0.42 -67.40 By element: Atomic # 1 Polarization: 23.57 SS G_CDS: 0.13 Total: 23.70 kcal Atomic # 6 Polarization: -13.20 SS G_CDS: 5.71 Total: -7.49 kcal Atomic # 7 Polarization: -100.35 SS G_CDS: -7.38 Total: -107.72 kcal Atomic # 8 Polarization: -20.61 SS G_CDS: -0.06 Total: -20.67 kcal Atomic # 14 Polarization: 42.76 SS G_CDS: 2.03 Total: 44.79 kcal Total: -67.82 0.42 -67.40 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172496759.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.722 kcal (2) G-P(sol) polarization free energy of solvation -67.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.396 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds