Wall clock time and date at job start Wed Apr 1 2020 04:42:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.47050 * 2 1 4 4 C 1.52997 * 109.47164 * 120.00004 * 2 1 3 5 5 C 1.52996 * 109.47276 * 294.99872 * 4 2 1 6 6 C 1.50701 * 109.47282 * 180.02562 * 5 4 2 7 7 H 1.08000 * 119.99805 * 0.02562 * 6 5 4 8 8 C 1.37873 * 120.00230 * 180.02562 * 6 5 4 9 9 N 1.31513 * 120.00159 * 359.97438 * 8 6 5 10 10 Si 1.86797 * 120.00258 * 180.02562 * 8 6 5 11 11 H 1.48498 * 109.47100 * 359.97438 * 10 8 6 12 12 H 1.48504 * 109.47291 * 119.99754 * 10 8 6 13 13 H 1.48500 * 109.47281 * 239.99928 * 10 8 6 14 14 N 1.46500 * 109.46998 * 240.00054 * 2 1 3 15 15 N 1.28939 * 125.00179 * 299.69903 * 14 2 1 16 16 C 1.32272 * 110.16983 * 179.77462 * 15 14 2 17 17 C 1.47714 * 126.68437 * 180.10089 * 16 15 14 18 18 O 1.21562 * 120.00234 * 180.31970 * 17 16 15 19 19 N 1.34783 * 119.99531 * 0.31967 * 17 16 15 20 20 C 1.47015 * 125.64795 * 359.69202 * 19 17 16 21 21 C 1.54313 * 107.27647 * 180.97173 * 20 19 17 22 22 C 1.55157 * 102.86258 * 22.52179 * 21 20 19 23 23 C 1.47423 * 125.64540 * 180.02562 * 19 17 16 24 24 C 1.40295 * 106.64027 * 0.37150 * 16 15 14 25 25 C 1.34034 * 125.00279 * 119.99730 * 14 2 1 26 26 C 1.50759 * 129.79553 * 0.31579 * 25 14 2 27 27 C 1.53550 * 107.79059 * 163.95860 * 26 25 14 28 28 N 1.46935 * 109.80531 * 49.24043 * 27 26 25 29 29 C 1.47411 * 111.48406 * 288.68726 * 28 27 26 30 30 H 1.09001 * 109.47002 * 299.99734 * 1 2 3 31 31 H 1.08993 * 109.46955 * 60.00171 * 1 2 3 32 32 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 33 33 H 1.09006 * 109.47396 * 55.00290 * 4 2 1 34 34 H 1.09001 * 109.46992 * 174.99449 * 4 2 1 35 35 H 1.08998 * 109.47375 * 300.00219 * 5 4 2 36 36 H 1.09000 * 109.46912 * 60.00396 * 5 4 2 37 37 H 0.97001 * 120.00240 * 180.02562 * 9 8 6 38 38 H 1.09009 * 109.88352 * 300.51425 * 20 19 17 39 39 H 1.08993 * 109.88636 * 61.68002 * 20 19 17 40 40 H 1.09004 * 110.92049 * 264.11425 * 21 20 19 41 41 H 1.08997 * 110.59469 * 140.78890 * 21 20 19 42 42 H 1.08998 * 111.00568 * 206.23237 * 22 21 20 43 43 H 1.09002 * 111.03677 * 82.39496 * 22 21 20 44 44 H 1.09000 * 110.36911 * 274.67141 * 23 19 17 45 45 H 1.08998 * 110.36722 * 36.88853 * 23 19 17 46 46 H 1.08996 * 109.80085 * 283.50824 * 26 25 14 47 47 H 1.09003 * 109.80162 * 44.37146 * 26 25 14 48 48 H 1.09006 * 109.40763 * 289.14501 * 27 26 25 49 49 H 1.08999 * 109.37031 * 169.31784 * 27 26 25 50 50 H 1.00899 * 110.99611 * 52.98725 * 28 27 26 51 51 H 1.08997 * 109.72184 * 291.20214 * 29 28 27 52 52 H 1.09002 * 109.75905 * 170.56499 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 1.6354 0.0689 2.4953 6 6 2.1383 -0.6412 3.7257 7 1 2.6916 -1.5636 3.6286 8 6 1.8920 -0.1133 4.9754 9 7 1.2186 1.0101 5.0936 10 14 2.5159 -0.9931 6.5005 11 1 3.2396 -2.2263 6.0993 12 1 3.4373 -0.0983 7.2460 13 1 1.3666 -1.3545 7.3686 14 7 2.0184 -0.6906 -1.1962 15 7 1.7715 -1.9210 -1.4924 16 6 2.3519 -2.2397 -2.6375 17 6 2.3048 -3.5511 -3.3157 18 8 2.8912 -3.7125 -4.3682 19 7 1.6117 -4.5687 -2.7674 20 6 0.8656 -4.5136 -1.5019 21 6 0.2574 -5.9122 -1.2671 22 6 1.1694 -6.8331 -2.1200 23 6 1.4819 -5.9235 -3.3341 24 6 3.0261 -1.0915 -3.0794 25 6 2.7922 -0.1381 -2.1409 26 6 3.3514 1.2588 -2.2350 27 6 4.4769 1.2442 -3.2794 28 7 4.0088 0.5856 -4.5066 29 6 3.8540 -0.8676 -4.3141 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 1.6055 -1.7199 1.2951 34 1 3.1264 -0.7995 1.2055 35 1 2.0699 1.0675 2.4494 36 1 0.5490 0.1471 2.5390 37 1 1.0457 1.3817 5.9728 38 1 1.5404 -4.2588 -0.6845 39 1 0.0696 -3.7724 -1.5728 40 1 -0.7724 -5.9534 -1.6222 41 1 0.3139 -6.1828 -0.2128 42 1 0.6360 -7.7311 -2.4315 43 1 2.0807 -7.0900 -1.5799 44 1 0.6637 -5.9571 -4.0535 45 1 2.4153 -6.2276 -3.8078 46 1 2.5682 1.9498 -2.5465 47 1 3.7496 1.5630 -1.2670 48 1 5.3338 0.7009 -2.8809 49 1 4.7716 2.2685 -3.5076 50 1 3.1493 1.0005 -4.8343 51 1 4.8338 -1.3284 -4.1884 52 1 3.3513 -1.3023 -5.1781 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172496760.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:42:33 Heat of formation + Delta-G solvation = 12.300769 kcal Electronic energy + Delta-G solvation = -31609.347125 eV Core-core repulsion = 27608.752408 eV Total energy + Delta-G solvation = -4000.594717 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -43.99079 -40.86016 -38.73366 -38.27350 -37.46183 -35.07443 -33.39616 -32.60682 -31.79162 -30.98685 -30.33811 -29.65549 -27.31906 -26.25419 -25.45074 -24.36019 -23.81012 -22.98203 -22.06360 -21.16291 -20.71225 -20.06397 -18.72946 -18.16400 -17.69922 -17.45041 -17.03561 -16.56186 -16.35442 -16.29237 -15.94334 -15.68156 -15.42829 -14.77464 -14.65184 -14.58939 -14.41615 -14.25895 -14.11567 -14.05885 -13.84926 -13.81558 -13.40281 -13.28875 -13.19547 -12.99388 -12.68428 -12.59694 -12.46276 -12.31579 -12.22623 -12.17733 -12.02047 -11.81144 -11.65833 -11.61091 -11.51844 -11.28190 -11.24447 -10.56665 -10.19552 -9.80676 -9.64395 -9.53687 -8.23543 -6.32812 0.47980 0.97261 1.34414 1.37230 1.39729 1.50837 1.92825 2.25844 2.38626 3.10749 3.11189 3.32363 3.43654 3.50456 3.66196 3.77615 3.83210 3.89240 4.00012 4.03699 4.06002 4.18467 4.29065 4.31913 4.45072 4.47452 4.56122 4.60409 4.64404 4.67006 4.72023 4.73938 4.85660 4.86783 4.88058 4.90758 4.96402 4.98246 5.01950 5.07791 5.10125 5.14423 5.22862 5.31818 5.42188 5.45917 5.65954 5.78673 5.82382 5.92391 6.21139 6.30738 6.42642 6.79141 6.81445 7.06630 7.36149 8.87667 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.008286 B = 0.003560 C = 0.002684 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3378.433064 B = 7862.531610 C =10430.712861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.148 3.852 3 H 0.121 0.879 4 C -0.096 4.096 5 C 0.034 3.966 6 C -0.544 4.544 7 H 0.050 0.950 8 C 0.010 3.990 9 N -0.925 5.925 10 Si 0.955 3.045 11 H -0.269 1.269 12 H -0.278 1.278 13 H -0.276 1.276 14 N -0.255 5.255 15 N -0.263 5.263 16 C -0.034 4.034 17 C 0.614 3.386 18 O -0.564 6.564 19 N -0.610 5.610 20 C 0.109 3.891 21 C -0.127 4.127 22 C -0.122 4.122 23 C 0.099 3.901 24 C -0.208 4.208 25 C 0.009 3.991 26 C -0.085 4.085 27 C 0.067 3.933 28 N -0.679 5.679 29 C 0.149 3.851 30 H 0.084 0.916 31 H 0.070 0.930 32 H 0.061 0.939 33 H 0.055 0.945 34 H 0.042 0.958 35 H 0.003 0.997 36 H 0.015 0.985 37 H 0.265 0.735 38 H 0.055 0.945 39 H 0.063 0.937 40 H 0.092 0.908 41 H 0.092 0.908 42 H 0.114 0.886 43 H 0.073 0.927 44 H 0.080 0.920 45 H 0.071 0.929 46 H 0.104 0.896 47 H 0.093 0.907 48 H 0.067 0.933 49 H 0.115 0.885 50 H 0.350 0.650 51 H 0.074 0.926 52 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.078 -6.133 -17.211 18.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.049 3.951 3 H 0.139 0.861 4 C -0.134 4.134 5 C -0.004 4.004 6 C -0.582 4.582 7 H 0.068 0.932 8 C -0.189 4.189 9 N -0.565 5.565 10 Si 0.780 3.220 11 H -0.193 1.193 12 H -0.203 1.203 13 H -0.202 1.202 14 N -0.041 5.041 15 N -0.100 5.100 16 C -0.192 4.192 17 C 0.402 3.598 18 O -0.442 6.442 19 N -0.343 5.343 20 C -0.014 4.014 21 C -0.165 4.165 22 C -0.160 4.160 23 C -0.022 4.022 24 C -0.221 4.221 25 C -0.118 4.118 26 C -0.125 4.125 27 C -0.063 4.063 28 N -0.306 5.306 29 C 0.018 3.982 30 H 0.103 0.897 31 H 0.089 0.911 32 H 0.080 0.920 33 H 0.073 0.927 34 H 0.061 0.939 35 H 0.022 0.978 36 H 0.033 0.967 37 H 0.074 0.926 38 H 0.074 0.926 39 H 0.082 0.918 40 H 0.110 0.890 41 H 0.111 0.889 42 H 0.132 0.868 43 H 0.092 0.908 44 H 0.098 0.902 45 H 0.090 0.910 46 H 0.122 0.878 47 H 0.111 0.889 48 H 0.086 0.914 49 H 0.133 0.867 50 H 0.168 0.832 51 H 0.092 0.908 52 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -0.883 -6.488 -17.001 18.219 hybrid contribution -0.116 -0.039 1.295 1.301 sum -0.999 -6.527 -15.706 17.038 Atomic orbital electron populations 1.22049 0.91744 1.03396 1.03441 1.21916 0.96952 0.96054 0.80222 0.86142 1.21698 0.99279 0.99456 0.93005 1.18970 0.96223 0.94420 0.90782 1.21587 1.35343 1.08715 0.92511 0.93171 1.25772 0.95255 0.95664 1.02159 1.70042 1.41189 1.20631 1.24620 0.85549 0.78312 0.78762 0.79359 1.19315 1.20339 1.20203 1.45768 1.33973 1.06707 1.17681 1.73908 1.22481 0.98338 1.15262 1.21450 1.05793 0.96179 0.95731 1.16645 0.78106 0.81757 0.83327 1.90722 1.47021 1.83026 1.23432 1.48433 1.49700 1.11855 1.24303 1.22094 0.95200 0.99469 0.84632 1.22699 1.00007 0.91726 1.02022 1.22791 1.00496 0.98076 0.94647 1.22474 1.02232 0.80069 0.97467 1.21001 1.06539 0.92387 1.02125 1.21605 0.99694 0.99502 0.90976 1.21219 1.00082 0.88080 1.03151 1.22161 0.95467 1.01504 0.87209 1.60782 1.37000 1.02292 1.30572 1.20249 0.97013 0.89059 0.91836 0.89728 0.91088 0.91985 0.92651 0.93942 0.97848 0.96710 0.92642 0.92618 0.91817 0.88985 0.88904 0.86790 0.90803 0.90221 0.91006 0.87828 0.88908 0.91420 0.86691 0.83178 0.90803 0.89981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.23 9.13 71.98 0.66 -3.57 16 2 C 0.15 4.56 3.06 44.99 0.14 4.70 16 3 H 0.12 3.32 7.29 -2.39 -0.02 3.30 16 4 C -0.10 -3.74 4.79 30.59 0.15 -3.59 16 5 C 0.03 1.60 4.73 29.85 0.14 1.74 16 6 C -0.54 -29.49 9.11 25.60 0.23 -29.26 16 7 H 0.05 2.71 7.74 -2.91 -0.02 2.69 16 8 C 0.01 0.56 5.46 84.65 0.46 1.02 16 9 N -0.92 -52.89 13.29 21.45 0.28 -52.61 16 10 Si 0.95 42.81 29.54 68.60 2.03 44.84 16 11 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 12 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 13 H -0.28 -12.05 7.11 99.48 0.71 -11.34 16 14 N -0.25 -7.88 3.02 -314.51 -0.95 -8.83 16 15 N -0.26 -8.74 9.24 -48.71 -0.45 -9.19 16 16 C -0.03 -1.13 6.96 42.08 0.29 -0.84 16 17 C 0.61 20.35 7.86 86.75 0.68 21.04 16 18 O -0.56 -20.59 16.16 -3.91 -0.06 -20.65 16 19 N -0.61 -16.66 3.33 -815.42 -2.71 -19.38 16 20 C 0.11 2.67 5.54 86.73 0.48 3.15 16 21 C -0.13 -2.05 6.95 31.78 0.22 -1.83 16 22 C -0.12 -1.75 7.08 31.98 0.23 -1.53 16 23 C 0.10 2.00 6.91 86.85 0.60 2.60 16 24 C -0.21 -6.26 6.07 -20.04 -0.12 -6.38 16 25 C 0.01 0.25 6.78 41.68 0.28 0.54 16 26 C -0.09 -1.66 5.78 30.05 0.17 -1.49 16 27 C 0.07 1.18 6.53 86.48 0.56 1.75 16 28 N -0.68 -13.75 6.88 -516.22 -3.55 -17.30 16 29 C 0.15 3.90 6.23 85.34 0.53 4.43 16 30 H 0.08 2.55 6.57 -2.39 -0.02 2.53 16 31 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 32 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 33 H 0.05 2.25 8.14 -2.38 -0.02 2.23 16 34 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 35 H 0.00 0.16 8.14 -2.39 -0.02 0.14 16 36 H 0.01 0.72 6.56 -2.39 -0.02 0.71 16 37 H 0.26 14.25 8.31 -92.71 -0.77 13.48 16 38 H 0.06 1.60 7.67 -2.38 -0.02 1.59 16 39 H 0.06 1.67 7.77 -2.39 -0.02 1.65 16 40 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 41 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 42 H 0.11 1.00 8.14 -2.39 -0.02 0.98 16 43 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 44 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 45 H 0.07 1.56 8.03 -2.39 -0.02 1.54 16 46 H 0.10 1.63 8.14 -2.39 -0.02 1.61 16 47 H 0.09 1.77 7.95 -2.39 -0.02 1.75 16 48 H 0.07 1.35 8.07 -2.38 -0.02 1.34 16 49 H 0.12 1.43 8.14 -2.39 -0.02 1.41 16 50 H 0.35 6.20 8.79 -89.69 -0.79 5.41 16 51 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 52 H 0.08 2.27 7.75 -2.39 -0.02 2.25 16 Total: -1.00 -67.95 410.08 0.42 -67.53 By element: Atomic # 1 Polarization: 23.00 SS G_CDS: 0.13 Total: 23.13 kcal Atomic # 6 Polarization: -13.24 SS G_CDS: 5.71 Total: -7.53 kcal Atomic # 7 Polarization: -99.93 SS G_CDS: -7.38 Total: -107.31 kcal Atomic # 8 Polarization: -20.59 SS G_CDS: -0.06 Total: -20.65 kcal Atomic # 14 Polarization: 42.81 SS G_CDS: 2.03 Total: 44.84 kcal Total: -67.95 0.42 -67.53 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172496760.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.828 kcal (2) G-P(sol) polarization free energy of solvation -67.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.528 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds