Wall clock time and date at job start Wed Apr 1 2020 04:43:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 109.47217 * 2 1 4 4 C 1.53001 * 109.47108 * 120.00247 * 2 1 3 5 5 C 1.53004 * 109.46793 * 294.44142 * 4 2 1 6 6 C 1.50708 * 109.46871 * 178.71304 * 5 4 2 7 7 H 1.07997 * 119.99576 * 0.02562 * 6 5 4 8 8 C 1.37878 * 119.99600 * 179.72699 * 6 5 4 9 9 N 1.31507 * 120.00152 * 0.27494 * 8 6 5 10 10 Si 1.86801 * 119.99621 * 180.27600 * 8 6 5 11 11 H 1.48507 * 109.47067 * 89.99931 * 10 8 6 12 12 H 1.48493 * 109.47189 * 209.99867 * 10 8 6 13 13 H 1.48504 * 109.47120 * 330.00122 * 10 8 6 14 14 N 1.46895 * 109.47024 * 240.00254 * 2 1 3 15 15 C 1.47992 * 111.00011 * 181.92677 * 14 2 1 16 16 C 1.55193 * 104.98290 * 213.95584 * 15 14 2 17 17 C 1.53570 * 101.47755 * 35.47113 * 16 15 14 18 18 C 1.53065 * 111.89712 * 203.96344 * 17 16 15 19 19 C 1.51648 * 103.83888 * 216.09813 * 18 17 16 20 20 O 1.21296 * 124.94273 * 194.95778 * 19 18 17 21 21 N 1.34608 * 110.11106 * 14.95209 * 19 18 17 22 22 C 1.40764 * 124.34489 * 180.33729 * 21 19 18 23 23 C 1.40257 * 126.08217 * 179.69624 * 22 21 19 24 24 N 1.30822 * 108.33492 * 179.81264 * 23 22 21 25 25 N 1.40069 * 108.36965 * 0.44152 * 24 23 22 26 26 C 1.46508 * 126.05352 * 179.73900 * 25 24 23 27 27 C 1.35753 * 126.08015 * 359.97438 * 22 21 19 28 28 C 1.47143 * 111.30797 * 0.33701 * 21 19 18 29 29 C 1.47838 * 111.00325 * 61.14929 * 14 2 1 30 30 H 1.08998 * 109.47198 * 299.99565 * 1 2 3 31 31 H 1.09004 * 109.47243 * 60.00257 * 1 2 3 32 32 H 1.09005 * 109.46995 * 179.97438 * 1 2 3 33 33 H 1.09006 * 109.47038 * 174.45158 * 4 2 1 34 34 H 1.08991 * 109.47374 * 54.44463 * 4 2 1 35 35 H 1.09002 * 109.46834 * 58.71779 * 5 4 2 36 36 H 1.08995 * 109.47637 * 298.71635 * 5 4 2 37 37 H 0.97000 * 119.99967 * 179.97438 * 9 8 6 38 38 H 1.09002 * 110.33982 * 332.82931 * 15 14 2 39 39 H 1.08998 * 110.34034 * 95.07790 * 15 14 2 40 40 H 1.09007 * 111.02068 * 277.42617 * 16 15 14 41 41 H 1.09003 * 111.02645 * 153.52504 * 16 15 14 42 42 H 1.09007 * 110.55335 * 334.68336 * 18 17 16 43 43 H 1.09000 * 110.55558 * 97.50461 * 18 17 16 44 44 H 1.08000 * 125.82589 * 359.97438 * 23 22 21 45 45 H 1.09004 * 109.46788 * 269.97029 * 26 25 24 46 46 H 1.09000 * 109.46806 * 29.97520 * 26 25 24 47 47 H 1.09004 * 109.47013 * 149.97410 * 26 25 24 48 48 H 1.08003 * 126.21798 * 0.02562 * 27 22 21 49 49 H 1.09000 * 110.31366 * 225.49668 * 28 21 19 50 50 H 1.08998 * 110.31323 * 103.32336 * 28 21 19 51 51 H 1.09010 * 109.99697 * 243.65188 * 29 14 2 52 52 H 1.09000 * 109.99841 * 4.98983 * 29 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6472 0.0761 2.4946 6 6 2.1220 -0.6504 3.7266 7 1 2.6513 -1.5869 3.6309 8 6 1.8860 -0.1163 4.9757 9 7 1.2419 1.0243 5.0921 10 14 2.4813 -1.0130 6.5025 11 1 3.8539 -0.5577 6.8403 12 1 1.5690 -0.7187 7.6366 13 1 2.4943 -2.4753 6.2442 14 7 2.0196 -0.6924 -1.1994 15 6 3.4983 -0.7525 -1.2106 16 6 3.8927 -0.6478 -2.7080 17 6 2.8220 0.3162 -3.2394 18 6 2.6015 0.1508 -4.7450 19 6 2.3364 1.5629 -5.2301 20 8 1.8626 1.8493 -6.3094 21 7 2.7033 2.4523 -4.2886 22 6 2.5811 3.8480 -4.4241 23 6 2.9453 4.8059 -3.4664 24 7 2.6875 5.9927 -3.9527 25 7 2.1406 5.8360 -5.2327 26 6 1.7067 6.9156 -6.1231 27 6 2.0849 4.5062 -5.5027 28 6 3.2485 1.7781 -3.0998 29 6 1.5684 -0.0062 -2.4287 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 3.1255 -0.8082 1.2009 34 1 1.5978 -1.7162 1.3003 35 1 0.5630 0.1826 2.5308 36 1 2.1081 1.0630 2.4545 37 1 1.0756 1.3998 5.9709 38 1 3.9157 0.0836 -0.6496 39 1 3.8422 -1.6990 -0.7936 40 1 3.8236 -1.6184 -3.1993 41 1 4.8908 -0.2244 -2.8208 42 1 3.4944 -0.2557 -5.2201 43 1 1.7397 -0.4882 -4.9377 44 1 3.3688 4.5990 -2.4947 45 1 0.6566 7.1404 -5.9364 46 1 2.3078 7.8052 -5.9352 47 1 1.8328 6.6041 -7.1600 48 1 1.7127 4.0543 -6.4104 49 1 2.8262 2.2104 -2.1926 50 1 4.3356 1.8554 -3.0861 51 1 0.9121 -0.6614 -3.0018 52 1 1.0442 0.9140 -2.1709 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172497448.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:43:52 Heat of formation + Delta-G solvation = 50.429423 kcal Electronic energy + Delta-G solvation = -30955.999369 eV Core-core repulsion = 26957.058035 eV Total energy + Delta-G solvation = -3998.941334 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.88167 -40.86043 -38.92124 -36.63292 -35.02417 -33.50147 -32.84052 -31.70159 -30.15352 -29.45899 -28.15183 -27.93909 -26.90841 -25.88179 -24.56827 -22.45114 -22.26519 -21.26678 -21.07544 -19.74357 -19.53988 -19.17935 -17.86298 -16.64791 -16.41740 -16.16000 -15.66762 -15.53921 -15.36375 -15.17541 -14.64267 -14.42966 -14.32899 -14.18291 -13.78824 -13.60074 -13.30513 -13.24600 -13.02311 -12.77690 -12.73005 -12.60962 -12.38258 -12.19249 -11.98279 -11.62209 -11.35327 -11.16533 -11.13587 -11.02148 -10.96743 -10.84918 -10.72720 -10.54640 -10.48019 -10.25491 -10.01090 -9.70544 -9.63565 -9.29658 -9.02026 -8.32923 -8.09575 -7.89342 -5.99248 -4.01028 1.51528 2.01266 2.05194 2.75250 2.85136 3.32043 3.38606 3.41987 3.86935 3.97396 4.05862 4.18443 4.30566 4.47195 4.57451 4.69016 4.78050 4.80455 4.84104 5.05795 5.11934 5.14063 5.17605 5.27385 5.30173 5.36538 5.36832 5.40502 5.48671 5.52602 5.59909 5.62290 5.74063 5.86253 5.89719 5.92235 6.00572 6.07641 6.30049 6.40596 6.47671 6.62329 6.66991 6.72897 6.74821 6.81300 7.08678 7.22947 7.36439 7.41742 7.69727 7.84634 7.86610 8.01337 8.44768 9.06243 9.62912 11.12072 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.013015 B = 0.002396 C = 0.002140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2150.824970 B =11683.567626 C =13083.315821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.077 3.923 3 H 0.035 0.965 4 C -0.102 4.102 5 C 0.022 3.978 6 C -0.518 4.518 7 H 0.054 0.946 8 C 0.056 3.944 9 N -0.896 5.896 10 Si 0.890 3.110 11 H -0.281 1.281 12 H -0.287 1.287 13 H -0.274 1.274 14 N -0.523 5.523 15 C 0.043 3.957 16 C -0.113 4.113 17 C -0.094 4.094 18 C -0.132 4.132 19 C 0.515 3.485 20 O -0.529 6.529 21 N -0.533 5.533 22 C 0.007 3.993 23 C 0.040 3.960 24 N -0.278 5.278 25 N -0.376 5.376 26 C 0.107 3.893 27 C 0.038 3.962 28 C 0.116 3.884 29 C 0.056 3.944 30 H 0.070 0.930 31 H 0.040 0.960 32 H 0.059 0.941 33 H 0.047 0.953 34 H 0.055 0.945 35 H 0.020 0.980 36 H 0.011 0.989 37 H 0.260 0.740 38 H 0.051 0.949 39 H 0.084 0.916 40 H 0.085 0.915 41 H 0.078 0.922 42 H 0.110 0.890 43 H 0.110 0.890 44 H 0.187 0.813 45 H 0.075 0.925 46 H 0.090 0.910 47 H 0.088 0.912 48 H 0.188 0.812 49 H 0.086 0.914 50 H 0.083 0.917 51 H 0.081 0.919 52 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.944 4.730 -24.546 25.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.031 4.031 3 H 0.053 0.947 4 C -0.140 4.140 5 C -0.015 4.015 6 C -0.556 4.556 7 H 0.072 0.928 8 C -0.145 4.145 9 N -0.536 5.536 10 Si 0.718 3.282 11 H -0.207 1.207 12 H -0.213 1.213 13 H -0.199 1.199 14 N -0.247 5.247 15 C -0.085 4.085 16 C -0.151 4.151 17 C -0.096 4.096 18 C -0.173 4.173 19 C 0.304 3.696 20 O -0.406 6.406 21 N -0.259 5.259 22 C -0.095 4.095 23 C -0.148 4.148 24 N -0.100 5.100 25 N -0.161 5.161 26 C -0.034 4.034 27 C -0.109 4.109 28 C -0.006 4.006 29 C -0.072 4.072 30 H 0.089 0.911 31 H 0.059 0.941 32 H 0.078 0.922 33 H 0.066 0.934 34 H 0.074 0.926 35 H 0.038 0.962 36 H 0.030 0.970 37 H 0.069 0.931 38 H 0.070 0.930 39 H 0.102 0.898 40 H 0.103 0.897 41 H 0.097 0.903 42 H 0.128 0.872 43 H 0.129 0.871 44 H 0.204 0.796 45 H 0.094 0.906 46 H 0.108 0.892 47 H 0.106 0.894 48 H 0.205 0.795 49 H 0.105 0.895 50 H 0.101 0.899 51 H 0.099 0.901 52 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 3.392 5.904 -24.846 25.762 hybrid contribution 0.581 -0.381 0.911 1.146 sum 3.973 5.523 -23.935 24.883 Atomic orbital electron populations 1.21895 0.94670 1.02222 1.01210 1.21980 0.95634 0.95302 0.90137 0.94663 1.21711 0.99335 0.99590 0.93320 1.19134 0.96941 0.94871 0.90579 1.21251 1.36234 1.06994 0.91142 0.92750 1.25016 0.95333 0.95008 0.99117 1.69957 1.41357 1.18649 1.23599 0.86625 0.78565 0.80155 0.82847 1.20732 1.21273 1.19868 1.63881 1.08729 1.50606 1.01491 1.23107 0.88202 1.02228 0.94920 1.22618 0.97039 0.99056 0.96370 1.21700 0.98525 0.94301 0.95044 1.22199 1.05458 0.94493 0.95115 1.21165 0.76868 0.88160 0.83371 1.90650 1.44588 1.83250 1.22111 1.45344 1.60175 1.02220 1.18183 1.17571 1.12114 0.83101 0.96713 1.23695 1.02319 0.88590 1.00155 1.77320 1.17460 1.21962 0.93252 1.48355 1.49429 1.05117 1.13215 1.21856 1.00990 0.88738 0.91833 1.22434 1.04053 0.83571 1.00863 1.22197 0.99384 0.91290 0.87744 1.22757 0.94725 0.98295 0.91408 0.91131 0.94061 0.92184 0.93390 0.92603 0.96195 0.97033 0.93056 0.93018 0.89793 0.89685 0.90307 0.87173 0.87142 0.79588 0.90612 0.89155 0.89371 0.79492 0.89529 0.89884 0.90117 0.92141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.27 8.85 37.16 0.33 -1.94 16 2 C 0.08 1.24 1.70 -67.72 -0.12 1.13 16 3 H 0.04 0.59 8.12 -51.93 -0.42 0.17 16 4 C -0.10 -2.01 4.58 -26.73 -0.12 -2.13 16 5 C 0.02 0.55 4.77 -27.88 -0.13 0.42 16 6 C -0.52 -14.44 9.11 -34.44 -0.31 -14.76 16 7 H 0.05 1.48 7.74 -52.49 -0.41 1.07 16 8 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 9 N -0.90 -26.72 13.29 55.43 0.74 -25.98 16 10 Si 0.89 21.52 29.54 -169.99 -5.02 16.50 16 11 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 12 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 13 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 14 N -0.52 -6.88 5.04 -223.66 -1.13 -8.01 16 15 C 0.04 0.49 5.28 -2.06 -0.01 0.48 16 16 C -0.11 -0.90 5.97 -25.27 -0.15 -1.05 16 17 C -0.09 -0.81 0.72 -154.36 -0.11 -0.92 16 18 C -0.13 -1.08 6.04 -27.38 -0.17 -1.25 16 19 C 0.52 5.84 8.00 -10.59 -0.08 5.76 16 20 O -0.53 -7.45 15.64 5.54 0.09 -7.36 16 21 N -0.53 -5.75 3.18 -112.90 -0.36 -6.11 16 22 C 0.01 0.09 6.80 -83.88 -0.57 -0.48 16 23 C 0.04 0.46 11.54 -17.22 -0.20 0.26 16 24 N -0.28 -3.44 12.56 30.70 0.39 -3.05 16 25 N -0.38 -3.95 4.04 -67.81 -0.27 -4.23 16 26 C 0.11 0.63 11.48 59.85 0.69 1.32 16 27 C 0.04 0.43 10.69 -16.68 -0.18 0.25 16 28 C 0.12 1.04 6.01 -3.73 -0.02 1.02 16 29 C 0.06 0.61 5.33 -3.45 -0.02 0.59 16 30 H 0.07 1.25 6.56 -51.93 -0.34 0.91 16 31 H 0.04 0.57 6.60 -51.93 -0.34 0.23 16 32 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 33 H 0.05 0.92 6.77 -51.93 -0.35 0.57 16 34 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 35 H 0.02 0.52 6.52 -51.93 -0.34 0.19 16 36 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 37 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 38 H 0.05 0.63 7.55 -51.93 -0.39 0.23 16 39 H 0.08 0.99 8.11 -51.93 -0.42 0.57 16 40 H 0.08 0.62 8.09 -51.93 -0.42 0.20 16 41 H 0.08 0.51 7.65 -51.93 -0.40 0.12 16 42 H 0.11 0.71 7.93 -51.93 -0.41 0.30 16 43 H 0.11 0.85 7.47 -51.93 -0.39 0.46 16 44 H 0.19 1.70 8.06 -52.49 -0.42 1.28 16 45 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 46 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 47 H 0.09 0.33 8.14 -51.93 -0.42 -0.10 16 48 H 0.19 2.05 6.51 -52.48 -0.34 1.71 16 49 H 0.09 0.84 7.69 -51.93 -0.40 0.44 16 50 H 0.08 0.63 7.60 -51.93 -0.39 0.23 16 51 H 0.08 0.85 7.47 -51.92 -0.39 0.46 16 52 H 0.06 0.73 6.01 -51.93 -0.31 0.41 16 LS Contribution 406.55 15.07 6.13 6.13 Total: -1.00 -33.93 406.55 -9.28 -43.22 By element: Atomic # 1 Polarization: 7.26 SS G_CDS: -8.56 Total: -1.30 kcal Atomic # 6 Polarization: -8.53 SS G_CDS: -1.28 Total: -9.80 kcal Atomic # 7 Polarization: -46.74 SS G_CDS: -0.64 Total: -47.38 kcal Atomic # 8 Polarization: -7.45 SS G_CDS: 0.09 Total: -7.36 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -33.93 -9.28 -43.22 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172497448.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.645 kcal (2) G-P(sol) polarization free energy of solvation -33.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.215 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds