Wall clock time and date at job start Wed Apr 1 2020 04:43:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 109.47217 * 2 1 4 4 C 1.53001 * 109.47108 * 120.00247 * 2 1 3 5 5 C 1.53004 * 109.46793 * 294.44142 * 4 2 1 6 6 C 1.50708 * 109.46871 * 178.71304 * 5 4 2 7 7 H 1.07997 * 119.99576 * 0.02562 * 6 5 4 8 8 C 1.37878 * 119.99600 * 179.72699 * 6 5 4 9 9 N 1.31507 * 120.00152 * 0.27494 * 8 6 5 10 10 Si 1.86801 * 119.99621 * 180.27600 * 8 6 5 11 11 H 1.48507 * 109.47067 * 89.99931 * 10 8 6 12 12 H 1.48493 * 109.47189 * 209.99867 * 10 8 6 13 13 H 1.48504 * 109.47120 * 330.00122 * 10 8 6 14 14 N 1.46895 * 109.47024 * 240.00254 * 2 1 3 15 15 C 1.47992 * 111.00011 * 181.92677 * 14 2 1 16 16 C 1.55193 * 104.98290 * 213.95584 * 15 14 2 17 17 C 1.53570 * 101.47755 * 35.47113 * 16 15 14 18 18 C 1.53065 * 111.89712 * 203.96344 * 17 16 15 19 19 C 1.51648 * 103.83888 * 216.09813 * 18 17 16 20 20 O 1.21296 * 124.94273 * 194.95778 * 19 18 17 21 21 N 1.34608 * 110.11106 * 14.95209 * 19 18 17 22 22 C 1.40764 * 124.34489 * 180.33729 * 21 19 18 23 23 C 1.40257 * 126.08217 * 179.69624 * 22 21 19 24 24 N 1.30822 * 108.33492 * 179.81264 * 23 22 21 25 25 N 1.40069 * 108.36965 * 0.44152 * 24 23 22 26 26 C 1.46508 * 126.05352 * 179.73900 * 25 24 23 27 27 C 1.35753 * 126.08015 * 359.97438 * 22 21 19 28 28 C 1.47143 * 111.30797 * 0.33701 * 21 19 18 29 29 C 1.47838 * 111.00325 * 61.14929 * 14 2 1 30 30 H 1.08998 * 109.47198 * 299.99565 * 1 2 3 31 31 H 1.09004 * 109.47243 * 60.00257 * 1 2 3 32 32 H 1.09005 * 109.46995 * 179.97438 * 1 2 3 33 33 H 1.09006 * 109.47038 * 174.45158 * 4 2 1 34 34 H 1.08991 * 109.47374 * 54.44463 * 4 2 1 35 35 H 1.09002 * 109.46834 * 58.71779 * 5 4 2 36 36 H 1.08995 * 109.47637 * 298.71635 * 5 4 2 37 37 H 0.97000 * 119.99967 * 179.97438 * 9 8 6 38 38 H 1.09002 * 110.33982 * 332.82931 * 15 14 2 39 39 H 1.08998 * 110.34034 * 95.07790 * 15 14 2 40 40 H 1.09007 * 111.02068 * 277.42617 * 16 15 14 41 41 H 1.09003 * 111.02645 * 153.52504 * 16 15 14 42 42 H 1.09007 * 110.55335 * 334.68336 * 18 17 16 43 43 H 1.09000 * 110.55558 * 97.50461 * 18 17 16 44 44 H 1.08000 * 125.82589 * 359.97438 * 23 22 21 45 45 H 1.09004 * 109.46788 * 269.97029 * 26 25 24 46 46 H 1.09000 * 109.46806 * 29.97520 * 26 25 24 47 47 H 1.09004 * 109.47013 * 149.97410 * 26 25 24 48 48 H 1.08003 * 126.21798 * 0.02562 * 27 22 21 49 49 H 1.09000 * 110.31366 * 225.49668 * 28 21 19 50 50 H 1.08998 * 110.31323 * 103.32336 * 28 21 19 51 51 H 1.09010 * 109.99697 * 243.65188 * 29 14 2 52 52 H 1.09000 * 109.99841 * 4.98983 * 29 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6472 0.0761 2.4946 6 6 2.1220 -0.6504 3.7266 7 1 2.6513 -1.5869 3.6309 8 6 1.8860 -0.1163 4.9757 9 7 1.2419 1.0243 5.0921 10 14 2.4813 -1.0130 6.5025 11 1 3.8539 -0.5577 6.8403 12 1 1.5690 -0.7187 7.6366 13 1 2.4943 -2.4753 6.2442 14 7 2.0196 -0.6924 -1.1994 15 6 3.4983 -0.7525 -1.2106 16 6 3.8927 -0.6478 -2.7080 17 6 2.8220 0.3162 -3.2394 18 6 2.6015 0.1508 -4.7450 19 6 2.3364 1.5629 -5.2301 20 8 1.8626 1.8493 -6.3094 21 7 2.7033 2.4523 -4.2886 22 6 2.5811 3.8480 -4.4241 23 6 2.9453 4.8059 -3.4664 24 7 2.6875 5.9927 -3.9527 25 7 2.1406 5.8360 -5.2327 26 6 1.7067 6.9156 -6.1231 27 6 2.0849 4.5062 -5.5027 28 6 3.2485 1.7781 -3.0998 29 6 1.5684 -0.0062 -2.4287 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 3.1255 -0.8082 1.2009 34 1 1.5978 -1.7162 1.3003 35 1 0.5630 0.1826 2.5308 36 1 2.1081 1.0630 2.4545 37 1 1.0756 1.3998 5.9709 38 1 3.9157 0.0836 -0.6496 39 1 3.8422 -1.6990 -0.7936 40 1 3.8236 -1.6184 -3.1993 41 1 4.8908 -0.2244 -2.8208 42 1 3.4944 -0.2557 -5.2201 43 1 1.7397 -0.4882 -4.9377 44 1 3.3688 4.5990 -2.4947 45 1 0.6566 7.1404 -5.9364 46 1 2.3078 7.8052 -5.9352 47 1 1.8328 6.6041 -7.1600 48 1 1.7127 4.0543 -6.4104 49 1 2.8262 2.2104 -2.1926 50 1 4.3356 1.8554 -3.0861 51 1 0.9121 -0.6614 -3.0018 52 1 1.0442 0.9140 -2.1709 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172497448.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:43:50 Heat of formation + Delta-G solvation = 28.807656 kcal Electronic energy + Delta-G solvation = -30956.936959 eV Core-core repulsion = 26957.058035 eV Total energy + Delta-G solvation = -3999.878924 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.69259 -41.68284 -39.90069 -37.69494 -36.22976 -34.92296 -34.00108 -32.85575 -31.49571 -30.26472 -29.26252 -28.97418 -27.59633 -27.14880 -26.01424 -23.68533 -23.11427 -22.57404 -21.97370 -20.73724 -20.42670 -20.31038 -18.66236 -18.51994 -17.33714 -17.09278 -16.69520 -16.50276 -16.30436 -16.27356 -16.00165 -15.64450 -15.38177 -15.02079 -14.70634 -14.55649 -14.45656 -14.24833 -14.00415 -13.95053 -13.63731 -13.49045 -13.39707 -13.25412 -13.21312 -12.99574 -12.85078 -12.63042 -12.38195 -12.27702 -12.06670 -11.97386 -11.83576 -11.79696 -11.60312 -11.43279 -11.30610 -11.21882 -10.96204 -10.83713 -10.51378 -10.50448 -9.15866 -8.72776 -8.17455 -6.27557 0.67380 1.17053 1.34242 1.41104 1.42097 1.53275 1.97198 2.03397 2.42557 3.03335 3.15601 3.16032 3.27698 3.42812 3.60593 3.79877 3.88496 4.04228 4.11427 4.17681 4.21375 4.37808 4.40090 4.41261 4.45341 4.53741 4.55661 4.60279 4.62751 4.64653 4.69835 4.74666 4.85262 4.89309 4.98460 5.00756 5.03521 5.09014 5.11276 5.15478 5.20816 5.25691 5.32213 5.41411 5.56556 5.68308 5.82919 5.90261 5.90699 6.03194 6.15616 6.19775 6.33047 6.52939 6.90108 7.03438 7.41364 8.94177 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.013015 B = 0.002396 C = 0.002140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2150.824970 B =11683.567626 C =13083.315821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.089 3.911 3 H 0.027 0.973 4 C -0.086 4.086 5 C 0.028 3.972 6 C -0.539 4.539 7 H 0.058 0.942 8 C -0.001 4.001 9 N -0.934 5.934 10 Si 0.961 3.039 11 H -0.272 1.272 12 H -0.284 1.284 13 H -0.263 1.263 14 N -0.526 5.526 15 C 0.035 3.965 16 C -0.097 4.097 17 C -0.083 4.083 18 C -0.120 4.120 19 C 0.506 3.494 20 O -0.564 6.564 21 N -0.533 5.533 22 C -0.011 4.011 23 C 0.034 3.966 24 N -0.305 5.305 25 N -0.374 5.374 26 C 0.096 3.904 27 C 0.033 3.967 28 C 0.115 3.885 29 C 0.055 3.945 30 H 0.043 0.957 31 H 0.061 0.939 32 H 0.059 0.941 33 H 0.053 0.947 34 H 0.049 0.951 35 H -0.003 1.003 36 H -0.014 1.014 37 H 0.262 0.738 38 H 0.041 0.959 39 H 0.080 0.920 40 H 0.102 0.898 41 H 0.102 0.898 42 H 0.137 0.863 43 H 0.120 0.880 44 H 0.201 0.799 45 H 0.086 0.914 46 H 0.098 0.902 47 H 0.111 0.889 48 H 0.190 0.810 49 H 0.076 0.924 50 H 0.103 0.897 51 H 0.090 0.910 52 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.271 3.373 -25.783 26.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.020 4.020 3 H 0.044 0.956 4 C -0.124 4.124 5 C -0.010 4.010 6 C -0.577 4.577 7 H 0.077 0.923 8 C -0.198 4.198 9 N -0.574 5.574 10 Si 0.786 3.214 11 H -0.198 1.198 12 H -0.209 1.209 13 H -0.187 1.187 14 N -0.251 5.251 15 C -0.092 4.092 16 C -0.135 4.135 17 C -0.085 4.085 18 C -0.159 4.159 19 C 0.297 3.703 20 O -0.443 6.443 21 N -0.259 5.259 22 C -0.114 4.114 23 C -0.153 4.153 24 N -0.128 5.128 25 N -0.160 5.160 26 C -0.044 4.044 27 C -0.115 4.115 28 C -0.007 4.007 29 C -0.072 4.072 30 H 0.062 0.938 31 H 0.080 0.920 32 H 0.078 0.922 33 H 0.071 0.929 34 H 0.068 0.932 35 H 0.016 0.984 36 H 0.004 0.996 37 H 0.071 0.929 38 H 0.060 0.940 39 H 0.098 0.902 40 H 0.120 0.880 41 H 0.120 0.880 42 H 0.155 0.845 43 H 0.138 0.862 44 H 0.217 0.783 45 H 0.105 0.895 46 H 0.117 0.883 47 H 0.130 0.870 48 H 0.206 0.794 49 H 0.094 0.906 50 H 0.121 0.879 51 H 0.108 0.892 52 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 4.732 4.548 -26.086 26.900 hybrid contribution 0.124 0.112 1.265 1.276 sum 4.856 4.660 -24.822 25.718 Atomic orbital electron populations 1.21812 0.94668 1.02079 1.00897 1.21669 0.95569 0.94508 0.90233 0.95556 1.21452 0.99599 0.98542 0.92817 1.19011 0.95144 0.94180 0.92631 1.21706 1.36207 1.07331 0.92437 0.92345 1.25949 0.95400 0.95800 1.02690 1.70093 1.42567 1.20267 1.24502 0.85504 0.78213 0.79237 0.78455 1.19759 1.20945 1.18746 1.63819 1.10151 1.50191 1.00914 1.23199 0.86879 1.01598 0.97571 1.22598 0.97725 0.99795 0.93383 1.21562 0.97577 0.94178 0.95152 1.22220 1.07051 0.92480 0.94198 1.21761 0.76216 0.89413 0.82950 1.90628 1.46172 1.83934 1.23537 1.45485 1.59875 1.01907 1.18598 1.17827 1.12708 0.83847 0.97033 1.23942 1.02240 0.88367 1.00718 1.77257 1.18489 1.22634 0.94412 1.48745 1.48556 1.05734 1.12958 1.22231 1.01700 0.88080 0.92345 1.22554 1.03936 0.84095 1.00900 1.22312 1.00416 0.91270 0.86692 1.22795 0.95959 0.97722 0.90737 0.93812 0.91977 0.92170 0.92859 0.93225 0.98444 0.99610 0.92906 0.94042 0.90185 0.88003 0.87970 0.84535 0.86201 0.78256 0.89537 0.88304 0.87048 0.79360 0.90595 0.87902 0.89164 0.93452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.43 8.85 71.98 0.64 -3.79 16 2 C 0.09 2.87 1.70 44.92 0.08 2.95 16 3 H 0.03 0.90 8.12 -2.39 -0.02 0.88 16 4 C -0.09 -3.46 4.58 30.60 0.14 -3.32 16 5 C 0.03 1.45 4.77 29.85 0.14 1.59 16 6 C -0.54 -30.53 9.11 25.60 0.23 -30.30 16 7 H 0.06 3.18 7.74 -2.91 -0.02 3.16 16 8 C 0.00 -0.05 5.46 84.66 0.46 0.41 16 9 N -0.93 -56.92 13.29 21.45 0.28 -56.64 16 10 Si 0.96 44.22 29.54 68.60 2.03 46.25 16 11 H -0.27 -12.06 7.11 99.48 0.71 -11.36 16 12 H -0.28 -12.83 7.11 99.48 0.71 -12.13 16 13 H -0.26 -11.57 7.11 99.48 0.71 -10.86 16 14 N -0.53 -13.15 5.04 -861.52 -4.35 -17.49 16 15 C 0.03 0.72 5.28 86.85 0.46 1.18 16 16 C -0.10 -1.19 5.97 31.54 0.19 -1.00 16 17 C -0.08 -1.20 0.72 -52.08 -0.04 -1.24 16 18 C -0.12 -1.57 6.04 30.17 0.18 -1.39 16 19 C 0.51 10.68 8.00 87.99 0.70 11.38 16 20 O -0.56 -15.40 15.64 -3.08 -0.05 -15.45 16 21 N -0.53 -10.89 3.18 -629.58 -2.00 -12.89 16 22 C -0.01 -0.27 6.80 37.62 0.26 -0.01 16 23 C 0.03 0.78 11.54 85.33 0.98 1.77 16 24 N -0.31 -7.54 12.56 -56.77 -0.71 -8.25 16 25 N -0.37 -7.73 4.04 -368.45 -1.49 -9.21 16 26 C 0.10 1.03 11.48 127.77 1.47 2.50 16 27 C 0.03 0.74 10.69 83.50 0.89 1.63 16 28 C 0.11 1.84 6.01 86.23 0.52 2.36 16 29 C 0.06 1.11 5.33 86.03 0.46 1.57 16 30 H 0.04 1.63 6.56 -2.39 -0.02 1.61 16 31 H 0.06 1.72 6.60 -2.39 -0.02 1.70 16 32 H 0.06 1.92 8.14 -2.38 -0.02 1.90 16 33 H 0.05 2.06 6.77 -2.38 -0.02 2.04 16 34 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 35 H 0.00 -0.15 6.52 -2.39 -0.02 -0.17 16 36 H -0.01 -0.82 8.14 -2.39 -0.02 -0.84 16 37 H 0.26 15.04 8.31 -92.71 -0.77 14.27 16 38 H 0.04 0.95 7.55 -2.39 -0.02 0.93 16 39 H 0.08 1.74 8.11 -2.39 -0.02 1.72 16 40 H 0.10 1.00 8.09 -2.38 -0.02 0.98 16 41 H 0.10 0.86 7.65 -2.39 -0.02 0.85 16 42 H 0.14 1.15 7.93 -2.38 -0.02 1.13 16 43 H 0.12 1.43 7.47 -2.39 -0.02 1.41 16 44 H 0.20 3.65 8.06 -2.91 -0.02 3.63 16 45 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 46 H 0.10 0.89 8.14 -2.39 -0.02 0.87 16 47 H 0.11 0.66 8.14 -2.39 -0.02 0.64 16 48 H 0.19 4.13 6.51 -2.91 -0.02 4.11 16 49 H 0.08 1.41 7.69 -2.39 -0.02 1.39 16 50 H 0.10 1.27 7.60 -2.39 -0.02 1.26 16 51 H 0.09 1.67 7.47 -2.38 -0.02 1.66 16 52 H 0.05 1.09 6.01 -2.39 -0.01 1.08 16 Total: -1.00 -75.15 406.55 2.39 -72.76 By element: Atomic # 1 Polarization: 13.71 SS G_CDS: 0.91 Total: 14.62 kcal Atomic # 6 Polarization: -21.47 SS G_CDS: 7.76 Total: -13.71 kcal Atomic # 7 Polarization: -96.21 SS G_CDS: -8.26 Total: -104.48 kcal Atomic # 8 Polarization: -15.40 SS G_CDS: -0.05 Total: -15.45 kcal Atomic # 14 Polarization: 44.22 SS G_CDS: 2.03 Total: 46.25 kcal Total: -75.15 2.39 -72.76 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172497448.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.568 kcal (2) G-P(sol) polarization free energy of solvation -75.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.760 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds