Wall clock time and date at job start Wed Apr 1 2020 04:43:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08993 * 109.47154 * 2 1 4 4 C 1.52996 * 109.47117 * 119.99807 * 2 1 3 5 5 C 1.53004 * 109.47130 * 294.44504 * 4 2 1 6 6 C 1.50702 * 109.47108 * 178.71770 * 5 4 2 7 7 H 1.08000 * 120.00196 * 359.97438 * 6 5 4 8 8 C 1.37875 * 120.00194 * 179.97438 * 6 5 4 9 9 N 1.31517 * 119.99744 * 359.97438 * 8 6 5 10 10 Si 1.86795 * 120.00100 * 180.02562 * 8 6 5 11 11 H 1.48501 * 109.47027 * 269.99431 * 10 8 6 12 12 H 1.48495 * 109.47461 * 29.99989 * 10 8 6 13 13 H 1.48507 * 109.46944 * 150.00045 * 10 8 6 14 14 N 1.46901 * 109.46886 * 239.99799 * 2 1 3 15 15 C 1.47990 * 110.99898 * 181.93542 * 14 2 1 16 16 C 1.55194 * 104.97858 * 213.95584 * 15 14 2 17 17 C 1.53561 * 101.48147 * 35.46858 * 16 15 14 18 18 C 1.53075 * 111.87524 * 88.13028 * 17 16 15 19 19 C 1.51648 * 103.83550 * 143.91679 * 18 17 16 20 20 O 1.21301 * 124.94156 * 165.06603 * 19 18 17 21 21 N 1.34612 * 110.11317 * 345.04653 * 19 18 17 22 22 C 1.40762 * 124.34758 * 179.68313 * 21 19 18 23 23 C 1.40255 * 126.08248 * 179.97438 * 22 21 19 24 24 N 1.30826 * 108.33653 * 179.97438 * 23 22 21 25 25 N 1.40072 * 108.37132 * 0.02562 * 24 23 22 26 26 C 1.46499 * 126.05951 * 179.97438 * 25 24 23 27 27 C 1.35760 * 126.07692 * 359.69488 * 22 21 19 28 28 C 1.47147 * 111.30639 * 359.66805 * 21 19 18 29 29 C 1.47840 * 110.99869 * 61.15535 * 14 2 1 30 30 H 1.09002 * 109.47333 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.46848 * 300.00277 * 1 2 3 32 32 H 1.09001 * 109.47001 * 60.00045 * 1 2 3 33 33 H 1.09001 * 109.47288 * 174.44436 * 4 2 1 34 34 H 1.09008 * 109.47138 * 54.44218 * 4 2 1 35 35 H 1.08994 * 109.47078 * 58.71859 * 5 4 2 36 36 H 1.08998 * 109.46822 * 298.71392 * 5 4 2 37 37 H 0.96998 * 120.00035 * 0.02562 * 9 8 6 38 38 H 1.09002 * 110.33665 * 332.82844 * 15 14 2 39 39 H 1.08993 * 110.34226 * 95.07235 * 15 14 2 40 40 H 1.09009 * 111.01893 * 277.42352 * 16 15 14 41 41 H 1.09002 * 111.05709 * 153.54015 * 16 15 14 42 42 H 1.09001 * 110.55517 * 262.50571 * 18 17 16 43 43 H 1.08998 * 110.55827 * 25.18821 * 18 17 16 44 44 H 1.08001 * 125.83087 * 359.95076 * 23 22 21 45 45 H 1.08999 * 109.47350 * 90.01577 * 26 25 24 46 46 H 1.08993 * 109.47572 * 210.02596 * 26 25 24 47 47 H 1.09002 * 109.46467 * 330.02031 * 26 25 24 48 48 H 1.07999 * 126.21976 * 0.02986 * 27 22 21 49 49 H 1.09002 * 110.30844 * 256.67441 * 28 21 19 50 50 H 1.08998 * 110.31499 * 134.49811 * 28 21 19 51 51 H 1.09003 * 109.99249 * 243.65409 * 29 14 2 52 52 H 1.08999 * 110.00031 * 4.94739 * 29 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 1.6472 0.0762 2.4946 6 6 2.1221 -0.6501 3.7266 7 1 2.6508 -1.5870 3.6311 8 6 1.8817 -0.1187 4.9759 9 7 1.2383 1.0225 5.0923 10 14 2.4709 -1.0186 6.5030 11 1 1.4118 -1.9496 6.9685 12 1 3.6997 -1.7878 6.1811 13 1 2.7697 -0.0338 7.5736 14 7 2.0196 -0.6926 -1.1994 15 6 3.4983 -0.7529 -1.2106 16 6 3.8927 -0.6482 -2.7079 17 6 2.8221 0.3158 -3.2394 18 6 3.2496 1.7786 -3.0951 19 6 2.6878 2.4447 -4.3363 20 8 2.5771 3.6425 -4.4922 21 7 2.3302 1.5132 -5.2399 22 6 1.7679 1.8015 -6.4977 23 6 1.3832 0.8621 -7.4655 24 7 0.9042 1.5073 -8.4978 25 7 0.9660 2.8804 -8.2278 26 6 0.5302 3.9556 -9.1224 27 6 1.4967 3.0383 -6.9876 28 6 2.6030 0.1549 -4.7442 29 6 1.5684 -0.0063 -2.4287 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 3.1255 -0.8082 1.2009 34 1 1.5977 -1.7162 1.3004 35 1 0.5631 0.1827 2.5308 36 1 2.1081 1.0631 2.4543 37 1 0.9326 1.4900 4.2993 38 1 3.9157 0.0833 -0.6495 39 1 3.8420 -1.6993 -0.7934 40 1 3.8235 -1.6188 -3.1992 41 1 4.8909 -0.2253 -2.8213 42 1 2.8164 2.2170 -2.1961 43 1 4.3364 1.8594 -3.0736 44 1 1.4682 -0.2107 -7.3742 45 1 -0.5185 4.1838 -8.9323 46 1 1.1340 4.8450 -8.9426 47 1 0.6510 3.6378 -10.1580 48 1 1.6734 3.9771 -6.4839 49 1 3.4995 -0.2472 -5.2162 50 1 1.7497 -0.4960 -4.9347 51 1 0.9121 -0.6614 -3.0017 52 1 1.0437 0.9137 -2.1709 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172497449.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:43:58 Heat of formation + Delta-G solvation = 46.541131 kcal Electronic energy + Delta-G solvation = -30743.049362 eV Core-core repulsion = 26743.939419 eV Total energy + Delta-G solvation = -3999.109943 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.94500 -40.93512 -38.95474 -36.75588 -35.14013 -33.64778 -32.99450 -31.66911 -30.09327 -29.38532 -28.59781 -27.85133 -26.90751 -25.78864 -24.22502 -22.43157 -22.40506 -21.44615 -21.22131 -19.87948 -19.57926 -19.32252 -17.90467 -16.89526 -16.55380 -16.30663 -15.79974 -15.52603 -15.44774 -15.24927 -14.74059 -14.42071 -14.16073 -13.89483 -13.73110 -13.66039 -13.49201 -13.35833 -13.18666 -13.05857 -12.84813 -12.68397 -12.37043 -12.31367 -11.93244 -11.62886 -11.41066 -11.29280 -11.21950 -11.13584 -11.05710 -10.95126 -10.69539 -10.51491 -10.29360 -10.11101 -10.04393 -9.80045 -9.77148 -9.65979 -8.49928 -8.28846 -8.15950 -7.96983 -6.33289 -4.01825 1.43247 1.94703 1.96997 2.68827 2.78104 3.44870 3.48384 3.64100 3.83834 3.91869 3.98884 4.12422 4.24523 4.52170 4.57042 4.61150 4.71860 4.72790 4.75023 4.98937 5.03827 5.08651 5.13856 5.21842 5.25943 5.29312 5.36075 5.39189 5.43865 5.49149 5.53208 5.54791 5.70121 5.77635 5.82677 5.83616 5.94905 6.01987 6.19777 6.30854 6.40159 6.50509 6.59389 6.60725 6.63049 6.74011 6.96112 7.13227 7.26540 7.31383 7.46406 7.58937 7.83219 8.26195 8.50246 8.92145 9.70170 11.07345 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.024073 B = 0.001962 C = 0.001920 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1162.828872 B =14265.616115 C =14577.460117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.075 3.925 3 H 0.035 0.965 4 C -0.094 4.094 5 C 0.009 3.991 6 C -0.599 4.599 7 H 0.048 0.952 8 C 0.013 3.987 9 N -0.915 5.915 10 Si 1.070 2.930 11 H -0.288 1.288 12 H -0.289 1.289 13 H -0.285 1.285 14 N -0.521 5.521 15 C 0.044 3.956 16 C -0.112 4.112 17 C -0.094 4.094 18 C -0.138 4.138 19 C 0.518 3.482 20 O -0.525 6.525 21 N -0.536 5.536 22 C 0.009 3.991 23 C 0.038 3.962 24 N -0.281 5.281 25 N -0.374 5.374 26 C 0.107 3.893 27 C 0.038 3.962 28 C 0.121 3.879 29 C 0.057 3.943 30 H 0.060 0.940 31 H 0.067 0.933 32 H 0.042 0.958 33 H 0.049 0.951 34 H 0.057 0.943 35 H 0.011 0.989 36 H 0.002 0.998 37 H 0.268 0.732 38 H 0.051 0.949 39 H 0.084 0.916 40 H 0.083 0.917 41 H 0.079 0.921 42 H 0.107 0.893 43 H 0.111 0.889 44 H 0.187 0.813 45 H 0.076 0.924 46 H 0.089 0.911 47 H 0.090 0.910 48 H 0.189 0.811 49 H 0.083 0.917 50 H 0.089 0.911 51 H 0.081 0.919 52 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.737 0.729 -28.607 28.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.032 4.032 3 H 0.053 0.947 4 C -0.132 4.132 5 C -0.029 4.029 6 C -0.637 4.637 7 H 0.066 0.934 8 C -0.191 4.191 9 N -0.552 5.552 10 Si 0.899 3.101 11 H -0.215 1.215 12 H -0.215 1.215 13 H -0.211 1.211 14 N -0.246 5.246 15 C -0.084 4.084 16 C -0.150 4.150 17 C -0.095 4.095 18 C -0.178 4.178 19 C 0.306 3.694 20 O -0.401 6.401 21 N -0.262 5.262 22 C -0.093 4.093 23 C -0.150 4.150 24 N -0.103 5.103 25 N -0.160 5.160 26 C -0.035 4.035 27 C -0.109 4.109 28 C -0.001 4.001 29 C -0.071 4.071 30 H 0.079 0.921 31 H 0.086 0.914 32 H 0.061 0.939 33 H 0.068 0.932 34 H 0.076 0.924 35 H 0.029 0.971 36 H 0.021 0.979 37 H 0.079 0.921 38 H 0.069 0.931 39 H 0.102 0.898 40 H 0.102 0.898 41 H 0.097 0.903 42 H 0.125 0.875 43 H 0.129 0.871 44 H 0.204 0.796 45 H 0.094 0.906 46 H 0.107 0.893 47 H 0.109 0.891 48 H 0.205 0.795 49 H 0.101 0.899 50 H 0.107 0.893 51 H 0.099 0.901 52 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 1.946 0.969 -28.284 28.367 hybrid contribution 0.584 0.812 -0.845 1.309 sum 2.530 1.781 -29.129 29.292 Atomic orbital electron populations 1.21890 0.94655 1.02283 1.01144 1.21994 0.95629 0.95331 0.90271 0.94691 1.21570 0.99483 0.99442 0.92716 1.19266 0.96104 0.95027 0.92485 1.22079 1.40221 1.09048 0.92392 0.93365 1.25841 0.95158 0.96575 1.01484 1.70754 1.35930 1.15096 1.33372 0.83524 0.76022 0.75267 0.75278 1.21480 1.21523 1.21060 1.63881 1.08822 1.50456 1.01434 1.23087 0.88106 1.02197 0.94965 1.22602 0.97083 0.99007 0.96337 1.21697 0.98399 0.95137 0.94313 1.22305 1.03437 0.94755 0.97279 1.21129 0.77210 0.85888 0.85124 1.90663 1.55227 1.14288 1.79956 1.45355 1.59309 1.08472 1.13093 1.17559 1.10228 0.92910 0.88622 1.23638 1.00558 1.00065 0.90694 1.77285 1.23060 0.86976 1.22959 1.48341 1.49375 1.05148 1.13126 1.21866 1.00964 0.86798 0.93842 1.22483 1.01467 0.99721 0.87261 1.22095 1.02497 0.82561 0.92978 1.22744 0.94738 0.98245 0.91406 0.92076 0.91438 0.93868 0.93217 0.92442 0.97086 0.97942 0.92141 0.93051 0.89765 0.89794 0.90252 0.87514 0.87088 0.79643 0.90596 0.89281 0.89146 0.79462 0.89906 0.89266 0.90121 0.92232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.27 8.85 37.16 0.33 -1.94 16 2 C 0.08 1.24 1.70 -67.71 -0.12 1.12 16 3 H 0.04 0.60 8.12 -51.93 -0.42 0.18 16 4 C -0.09 -1.91 4.58 -26.73 -0.12 -2.03 16 5 C 0.01 0.22 4.08 -27.88 -0.11 0.10 16 6 C -0.60 -17.10 9.11 -34.44 -0.31 -17.41 16 7 H 0.05 1.36 7.74 -52.49 -0.41 0.95 16 8 C 0.01 0.37 5.46 -17.82 -0.10 0.28 16 9 N -0.91 -28.21 13.65 55.43 0.76 -27.45 16 10 Si 1.07 25.50 29.90 -169.99 -5.08 20.42 16 11 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 12 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 13 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 14 N -0.52 -6.94 5.04 -223.66 -1.13 -8.06 16 15 C 0.04 0.51 5.28 -2.06 -0.01 0.50 16 16 C -0.11 -0.89 5.96 -25.28 -0.15 -1.04 16 17 C -0.09 -0.80 0.72 -154.36 -0.11 -0.91 16 18 C -0.14 -1.34 5.92 -27.38 -0.16 -1.50 16 19 C 0.52 6.13 8.00 -10.59 -0.08 6.04 16 20 O -0.53 -7.82 15.64 5.54 0.09 -7.74 16 21 N -0.54 -5.36 3.18 -112.90 -0.36 -5.72 16 22 C 0.01 0.10 6.80 -83.88 -0.57 -0.47 16 23 C 0.04 0.36 11.54 -17.22 -0.20 0.16 16 24 N -0.28 -3.01 12.56 30.70 0.39 -2.62 16 25 N -0.37 -3.56 4.04 -67.82 -0.27 -3.83 16 26 C 0.11 0.54 11.48 59.85 0.69 1.23 16 27 C 0.04 0.40 10.69 -16.67 -0.18 0.22 16 28 C 0.12 0.88 6.13 -3.73 -0.02 0.85 16 29 C 0.06 0.61 5.33 -3.44 -0.02 0.60 16 30 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 31 H 0.07 1.19 6.56 -51.93 -0.34 0.85 16 32 H 0.04 0.60 6.60 -51.93 -0.34 0.26 16 33 H 0.05 0.99 6.76 -51.93 -0.35 0.64 16 34 H 0.06 1.20 8.14 -51.92 -0.42 0.78 16 35 H 0.01 0.29 6.39 -51.93 -0.33 -0.04 16 36 H 0.00 0.06 8.01 -51.93 -0.42 -0.35 16 37 H 0.27 8.23 7.22 -40.82 -0.29 7.93 16 38 H 0.05 0.66 7.55 -51.93 -0.39 0.26 16 39 H 0.08 1.01 8.11 -51.93 -0.42 0.59 16 40 H 0.08 0.58 8.09 -51.92 -0.42 0.16 16 41 H 0.08 0.53 7.65 -51.93 -0.40 0.13 16 42 H 0.11 1.17 7.69 -51.93 -0.40 0.77 16 43 H 0.11 0.91 7.61 -51.93 -0.40 0.52 16 44 H 0.19 1.16 8.06 -52.49 -0.42 0.74 16 45 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 46 H 0.09 0.29 8.14 -51.93 -0.42 -0.14 16 47 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 48 H 0.19 2.03 6.51 -52.49 -0.34 1.69 16 49 H 0.08 0.47 7.92 -51.93 -0.41 0.05 16 50 H 0.09 0.55 7.47 -51.93 -0.39 0.16 16 51 H 0.08 0.82 7.48 -51.93 -0.39 0.43 16 52 H 0.06 0.72 6.00 -51.93 -0.31 0.41 16 LS Contribution 405.23 15.07 6.11 6.11 Total: -1.00 -35.15 405.23 -9.27 -44.42 By element: Atomic # 1 Polarization: 7.18 SS G_CDS: -8.50 Total: -1.32 kcal Atomic # 6 Polarization: -12.94 SS G_CDS: -1.25 Total: -14.20 kcal Atomic # 7 Polarization: -47.07 SS G_CDS: -0.62 Total: -47.69 kcal Atomic # 8 Polarization: -7.82 SS G_CDS: 0.09 Total: -7.74 kcal Atomic # 14 Polarization: 25.50 SS G_CDS: -5.08 Total: 20.42 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -35.15 -9.27 -44.42 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172497449.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.960 kcal (2) G-P(sol) polarization free energy of solvation -35.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.419 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds