Wall clock time and date at job start Wed Apr 1 2020 04:43:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08993 * 109.47154 * 2 1 4 4 C 1.52996 * 109.47117 * 119.99807 * 2 1 3 5 5 C 1.53004 * 109.47130 * 294.44504 * 4 2 1 6 6 C 1.50702 * 109.47108 * 178.71770 * 5 4 2 7 7 H 1.08000 * 120.00196 * 359.97438 * 6 5 4 8 8 C 1.37875 * 120.00194 * 179.97438 * 6 5 4 9 9 N 1.31517 * 119.99744 * 359.97438 * 8 6 5 10 10 Si 1.86795 * 120.00100 * 180.02562 * 8 6 5 11 11 H 1.48501 * 109.47027 * 269.99431 * 10 8 6 12 12 H 1.48495 * 109.47461 * 29.99989 * 10 8 6 13 13 H 1.48507 * 109.46944 * 150.00045 * 10 8 6 14 14 N 1.46901 * 109.46886 * 239.99799 * 2 1 3 15 15 C 1.47990 * 110.99898 * 181.93542 * 14 2 1 16 16 C 1.55194 * 104.97858 * 213.95584 * 15 14 2 17 17 C 1.53561 * 101.48147 * 35.46858 * 16 15 14 18 18 C 1.53075 * 111.87524 * 88.13028 * 17 16 15 19 19 C 1.51648 * 103.83550 * 143.91679 * 18 17 16 20 20 O 1.21301 * 124.94156 * 165.06603 * 19 18 17 21 21 N 1.34612 * 110.11317 * 345.04653 * 19 18 17 22 22 C 1.40762 * 124.34758 * 179.68313 * 21 19 18 23 23 C 1.40255 * 126.08248 * 179.97438 * 22 21 19 24 24 N 1.30826 * 108.33653 * 179.97438 * 23 22 21 25 25 N 1.40072 * 108.37132 * 0.02562 * 24 23 22 26 26 C 1.46499 * 126.05951 * 179.97438 * 25 24 23 27 27 C 1.35760 * 126.07692 * 359.69488 * 22 21 19 28 28 C 1.47147 * 111.30639 * 359.66805 * 21 19 18 29 29 C 1.47840 * 110.99869 * 61.15535 * 14 2 1 30 30 H 1.09002 * 109.47333 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.46848 * 300.00277 * 1 2 3 32 32 H 1.09001 * 109.47001 * 60.00045 * 1 2 3 33 33 H 1.09001 * 109.47288 * 174.44436 * 4 2 1 34 34 H 1.09008 * 109.47138 * 54.44218 * 4 2 1 35 35 H 1.08994 * 109.47078 * 58.71859 * 5 4 2 36 36 H 1.08998 * 109.46822 * 298.71392 * 5 4 2 37 37 H 0.96998 * 120.00035 * 0.02562 * 9 8 6 38 38 H 1.09002 * 110.33665 * 332.82844 * 15 14 2 39 39 H 1.08993 * 110.34226 * 95.07235 * 15 14 2 40 40 H 1.09009 * 111.01893 * 277.42352 * 16 15 14 41 41 H 1.09002 * 111.05709 * 153.54015 * 16 15 14 42 42 H 1.09001 * 110.55517 * 262.50571 * 18 17 16 43 43 H 1.08998 * 110.55827 * 25.18821 * 18 17 16 44 44 H 1.08001 * 125.83087 * 359.95076 * 23 22 21 45 45 H 1.08999 * 109.47350 * 90.01577 * 26 25 24 46 46 H 1.08993 * 109.47572 * 210.02596 * 26 25 24 47 47 H 1.09002 * 109.46467 * 330.02031 * 26 25 24 48 48 H 1.07999 * 126.21976 * 0.02986 * 27 22 21 49 49 H 1.09002 * 110.30844 * 256.67441 * 28 21 19 50 50 H 1.08998 * 110.31499 * 134.49811 * 28 21 19 51 51 H 1.09003 * 109.99249 * 243.65409 * 29 14 2 52 52 H 1.08999 * 110.00031 * 4.94739 * 29 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 1.6472 0.0762 2.4946 6 6 2.1221 -0.6501 3.7266 7 1 2.6508 -1.5870 3.6311 8 6 1.8817 -0.1187 4.9759 9 7 1.2383 1.0225 5.0923 10 14 2.4709 -1.0186 6.5030 11 1 1.4118 -1.9496 6.9685 12 1 3.6997 -1.7878 6.1811 13 1 2.7697 -0.0338 7.5736 14 7 2.0196 -0.6926 -1.1994 15 6 3.4983 -0.7529 -1.2106 16 6 3.8927 -0.6482 -2.7079 17 6 2.8221 0.3158 -3.2394 18 6 3.2496 1.7786 -3.0951 19 6 2.6878 2.4447 -4.3363 20 8 2.5771 3.6425 -4.4922 21 7 2.3302 1.5132 -5.2399 22 6 1.7679 1.8015 -6.4977 23 6 1.3832 0.8621 -7.4655 24 7 0.9042 1.5073 -8.4978 25 7 0.9660 2.8804 -8.2278 26 6 0.5302 3.9556 -9.1224 27 6 1.4967 3.0383 -6.9876 28 6 2.6030 0.1549 -4.7442 29 6 1.5684 -0.0063 -2.4287 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 3.1255 -0.8082 1.2009 34 1 1.5977 -1.7162 1.3004 35 1 0.5631 0.1827 2.5308 36 1 2.1081 1.0631 2.4543 37 1 0.9326 1.4900 4.2993 38 1 3.9157 0.0833 -0.6495 39 1 3.8420 -1.6993 -0.7934 40 1 3.8235 -1.6188 -3.1992 41 1 4.8909 -0.2253 -2.8213 42 1 2.8164 2.2170 -2.1961 43 1 4.3364 1.8594 -3.0736 44 1 1.4682 -0.2107 -7.3742 45 1 -0.5185 4.1838 -8.9323 46 1 1.1340 4.8450 -8.9426 47 1 0.6510 3.6378 -10.1580 48 1 1.6734 3.9771 -6.4839 49 1 3.4995 -0.2472 -5.2162 50 1 1.7497 -0.4960 -4.9347 51 1 0.9121 -0.6614 -3.0017 52 1 1.0437 0.9137 -2.1709 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172497449.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:43:57 Heat of formation + Delta-G solvation = 23.562911 kcal Electronic energy + Delta-G solvation = -30744.045773 eV Core-core repulsion = 26743.939419 eV Total energy + Delta-G solvation = -4000.106353 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -42.69801 -41.70787 -39.95721 -37.84013 -36.44337 -35.08998 -33.99926 -32.76081 -31.42824 -30.14521 -29.41915 -29.16910 -27.51467 -26.99782 -25.81372 -23.84985 -23.15686 -22.78809 -21.94992 -20.86794 -20.52831 -20.32992 -18.96440 -18.63959 -17.37346 -17.14607 -16.70763 -16.50295 -16.30624 -16.06425 -15.79554 -15.64300 -15.38398 -15.15442 -14.93423 -14.66084 -14.59924 -14.39620 -13.99746 -13.96989 -13.81411 -13.65791 -13.44956 -13.33866 -13.25733 -12.89368 -12.74854 -12.59134 -12.34802 -12.10335 -12.05386 -11.96062 -11.94484 -11.81657 -11.74483 -11.60525 -11.45542 -11.20040 -10.91655 -10.61896 -10.51778 -10.48849 -9.24911 -8.71813 -8.67821 -6.37739 0.67645 1.15457 1.33660 1.52321 1.61806 1.79377 1.97913 2.02923 2.57114 2.95008 3.11793 3.16936 3.21549 3.36954 3.62404 3.76743 3.88575 3.96831 3.99581 4.08889 4.19852 4.35681 4.37442 4.39077 4.42175 4.45080 4.51861 4.58718 4.62613 4.64420 4.65320 4.68714 4.71440 4.77015 4.82523 4.85332 4.96499 5.00682 5.03797 5.10591 5.13395 5.14792 5.24459 5.27686 5.45812 5.58751 5.71359 5.89730 5.99339 5.99680 6.08216 6.13670 6.21246 6.55998 6.60207 6.98826 7.44153 8.72837 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.024073 B = 0.001962 C = 0.001920 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1162.828872 B =14265.616115 C =14577.460117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.087 3.913 3 H 0.022 0.978 4 C -0.079 4.079 5 C 0.011 3.989 6 C -0.616 4.616 7 H 0.050 0.950 8 C -0.042 4.042 9 N -0.940 5.940 10 Si 1.120 2.880 11 H -0.272 1.272 12 H -0.268 1.268 13 H -0.284 1.284 14 N -0.523 5.523 15 C 0.035 3.965 16 C -0.096 4.096 17 C -0.083 4.083 18 C -0.134 4.134 19 C 0.508 3.492 20 O -0.568 6.568 21 N -0.530 5.530 22 C -0.009 4.009 23 C 0.045 3.955 24 N -0.304 5.304 25 N -0.376 5.376 26 C 0.096 3.904 27 C 0.024 3.976 28 C 0.122 3.878 29 C 0.055 3.945 30 H 0.062 0.938 31 H 0.041 0.959 32 H 0.065 0.935 33 H 0.051 0.949 34 H 0.051 0.949 35 H -0.005 1.005 36 H -0.020 1.020 37 H 0.254 0.746 38 H 0.034 0.966 39 H 0.081 0.919 40 H 0.107 0.893 41 H 0.099 0.901 42 H 0.087 0.913 43 H 0.128 0.872 44 H 0.218 0.782 45 H 0.085 0.915 46 H 0.105 0.895 47 H 0.101 0.899 48 H 0.179 0.821 49 H 0.112 0.888 50 H 0.108 0.892 51 H 0.097 0.903 52 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.762 -1.575 -30.453 30.725 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.022 4.022 3 H 0.040 0.960 4 C -0.117 4.117 5 C -0.026 4.026 6 C -0.654 4.654 7 H 0.068 0.932 8 C -0.239 4.239 9 N -0.577 5.577 10 Si 0.941 3.059 11 H -0.198 1.198 12 H -0.192 1.192 13 H -0.209 1.209 14 N -0.248 5.248 15 C -0.093 4.093 16 C -0.134 4.134 17 C -0.084 4.084 18 C -0.174 4.174 19 C 0.297 3.703 20 O -0.447 6.447 21 N -0.255 5.255 22 C -0.111 4.111 23 C -0.142 4.142 24 N -0.127 5.127 25 N -0.161 5.161 26 C -0.043 4.043 27 C -0.123 4.123 28 C 0.001 3.999 29 C -0.072 4.072 30 H 0.081 0.919 31 H 0.060 0.940 32 H 0.083 0.917 33 H 0.070 0.930 34 H 0.070 0.930 35 H 0.013 0.987 36 H -0.002 1.002 37 H 0.063 0.937 38 H 0.052 0.948 39 H 0.099 0.901 40 H 0.126 0.874 41 H 0.118 0.882 42 H 0.106 0.894 43 H 0.146 0.854 44 H 0.234 0.766 45 H 0.104 0.896 46 H 0.124 0.876 47 H 0.120 0.880 48 H 0.196 0.804 49 H 0.130 0.870 50 H 0.127 0.873 51 H 0.115 0.885 52 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 2.961 -1.365 -30.186 30.362 hybrid contribution 0.230 1.572 -0.330 1.623 sum 3.191 0.208 -30.517 30.684 Atomic orbital electron populations 1.21814 0.94369 1.02282 1.00971 1.21681 0.95787 0.94286 0.90410 0.96035 1.21332 0.99539 0.98476 0.92382 1.19192 0.94761 0.94402 0.94291 1.22528 1.39869 1.09228 0.93726 0.93175 1.27463 0.94529 0.96534 1.05382 1.70893 1.37760 1.16394 1.32689 0.82910 0.76813 0.74607 0.71598 1.19754 1.19231 1.20915 1.63841 1.10088 1.49954 1.00872 1.23184 0.86916 1.01309 0.97847 1.22587 0.97621 1.00065 0.93120 1.21566 0.97383 0.94277 0.95197 1.22295 1.04268 0.95371 0.95478 1.21495 0.77126 0.85647 0.85991 1.90635 1.57118 1.16095 1.80851 1.45436 1.58260 1.09241 1.12606 1.17801 1.10907 0.93280 0.89126 1.24090 0.99284 1.01268 0.89594 1.77243 1.23904 0.87654 1.23860 1.48682 1.48822 1.05527 1.13092 1.22194 1.01873 0.86476 0.93800 1.22530 1.01965 0.99832 0.88006 1.22328 1.04719 0.81338 0.91525 1.22819 0.96033 0.97678 0.90701 0.91885 0.94001 0.91658 0.93044 0.93005 0.98663 1.00198 0.93651 0.94752 0.90093 0.87429 0.88209 0.89441 0.85369 0.76601 0.89610 0.87630 0.88050 0.80365 0.86982 0.87344 0.88469 0.93858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.43 8.85 71.98 0.64 -3.79 16 2 C 0.09 2.89 1.70 44.91 0.08 2.97 16 3 H 0.02 0.78 8.12 -2.39 -0.02 0.76 16 4 C -0.08 -3.27 4.58 30.59 0.14 -3.13 16 5 C 0.01 0.58 4.08 29.85 0.12 0.70 16 6 C -0.62 -35.74 9.11 25.60 0.23 -35.51 16 7 H 0.05 2.83 7.74 -2.91 -0.02 2.81 16 8 C -0.04 -2.49 5.46 84.65 0.46 -2.03 16 9 N -0.94 -59.44 13.65 21.45 0.29 -59.15 16 10 Si 1.12 50.94 29.90 68.60 2.05 52.99 16 11 H -0.27 -11.62 7.11 99.48 0.71 -10.92 16 12 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 13 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 14 N -0.52 -13.21 5.04 -861.53 -4.35 -17.56 16 15 C 0.03 0.75 5.28 86.85 0.46 1.21 16 16 C -0.10 -1.16 5.96 31.54 0.19 -0.97 16 17 C -0.08 -1.18 0.72 -52.09 -0.04 -1.22 16 18 C -0.13 -2.46 5.92 30.18 0.18 -2.28 16 19 C 0.51 11.75 8.00 87.99 0.70 12.45 16 20 O -0.57 -17.42 15.64 -3.09 -0.05 -17.47 16 21 N -0.53 -9.57 3.18 -629.57 -2.00 -11.57 16 22 C -0.01 -0.17 6.80 37.62 0.26 0.09 16 23 C 0.04 0.74 11.54 85.33 0.98 1.72 16 24 N -0.30 -6.02 12.56 -56.77 -0.71 -6.73 16 25 N -0.38 -6.80 4.04 -368.48 -1.49 -8.29 16 26 C 0.10 0.88 11.48 127.77 1.47 2.35 16 27 C 0.02 0.51 10.69 83.50 0.89 1.40 16 28 C 0.12 1.28 6.13 86.23 0.53 1.81 16 29 C 0.06 1.09 5.33 86.03 0.46 1.54 16 30 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 31 H 0.04 1.54 6.56 -2.39 -0.02 1.53 16 32 H 0.06 1.79 6.60 -2.39 -0.02 1.78 16 33 H 0.05 2.07 6.76 -2.39 -0.02 2.06 16 34 H 0.05 2.18 8.14 -2.38 -0.02 2.16 16 35 H 0.00 -0.27 6.39 -2.39 -0.02 -0.28 16 36 H -0.02 -1.15 8.01 -2.39 -0.02 -1.17 16 37 H 0.25 16.31 7.22 -92.71 -0.67 15.64 16 38 H 0.03 0.86 7.55 -2.39 -0.02 0.84 16 39 H 0.08 1.80 8.11 -2.39 -0.02 1.79 16 40 H 0.11 0.90 8.09 -2.38 -0.02 0.88 16 41 H 0.10 0.89 7.65 -2.39 -0.02 0.87 16 42 H 0.09 1.97 7.69 -2.39 -0.02 1.95 16 43 H 0.13 1.88 7.61 -2.39 -0.02 1.86 16 44 H 0.22 1.86 8.06 -2.91 -0.02 1.83 16 45 H 0.09 0.62 8.14 -2.39 -0.02 0.60 16 46 H 0.11 0.59 8.14 -2.39 -0.02 0.57 16 47 H 0.10 0.70 8.14 -2.39 -0.02 0.68 16 48 H 0.18 4.03 6.51 -2.91 -0.02 4.01 16 49 H 0.11 0.65 7.92 -2.39 -0.02 0.63 16 50 H 0.11 0.81 7.47 -2.39 -0.02 0.79 16 51 H 0.10 1.64 7.48 -2.39 -0.02 1.62 16 52 H 0.04 1.01 6.00 -2.39 -0.01 1.00 16 Total: -1.00 -79.22 405.23 2.51 -76.71 By element: Atomic # 1 Polarization: 12.73 SS G_CDS: 1.01 Total: 13.74 kcal Atomic # 6 Polarization: -30.42 SS G_CDS: 7.75 Total: -22.67 kcal Atomic # 7 Polarization: -95.04 SS G_CDS: -8.26 Total: -103.30 kcal Atomic # 8 Polarization: -17.42 SS G_CDS: -0.05 Total: -17.47 kcal Atomic # 14 Polarization: 50.94 SS G_CDS: 2.05 Total: 52.99 kcal Total: -79.22 2.51 -76.71 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172497449.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.273 kcal (2) G-P(sol) polarization free energy of solvation -79.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.710 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds