Wall clock time and date at job start Wed Apr 1 2020 04:44:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09003 * 109.46636 * 2 1 4 4 C 1.52997 * 109.46988 * 240.00199 * 2 1 3 5 5 C 1.53005 * 109.47431 * 64.47031 * 4 2 1 6 6 C 1.50692 * 109.47269 * 174.82187 * 5 4 2 7 7 H 1.08000 * 120.00021 * 359.97438 * 6 5 4 8 8 C 1.37884 * 119.99930 * 180.02562 * 6 5 4 9 9 N 1.31514 * 119.99519 * 180.02562 * 8 6 5 10 10 Si 1.86797 * 119.99965 * 359.97438 * 8 6 5 11 11 H 1.48494 * 109.47031 * 89.99979 * 10 8 6 12 12 H 1.48502 * 109.46790 * 210.00395 * 10 8 6 13 13 H 1.48502 * 109.47042 * 329.99948 * 10 8 6 14 14 N 1.46901 * 109.47318 * 120.00193 * 2 1 3 15 15 C 1.46973 * 110.99761 * 295.12577 * 14 2 1 16 16 C 1.53399 * 109.66003 * 165.12202 * 15 14 2 17 17 N 1.46527 * 108.23639 * 49.66256 * 16 15 14 18 18 C 1.36041 * 128.67096 * 163.55849 * 17 16 15 19 19 C 1.50703 * 126.67907 * 0.24445 * 18 17 16 20 20 N 1.46500 * 109.47258 * 275.02751 * 19 18 17 21 21 C 1.34779 * 120.00087 * 179.97438 * 20 19 18 22 22 O 1.21277 * 120.00033 * 0.02562 * 21 20 19 23 23 C 1.50698 * 119.99919 * 180.02562 * 21 20 19 24 24 C 1.53005 * 117.49741 * 248.74913 * 23 21 20 25 25 C 1.53001 * 117.49666 * 180.09026 * 23 21 20 26 26 C 1.34928 * 106.64497 * 180.24876 * 18 17 16 27 27 N 1.34370 * 108.09215 * 359.96210 * 26 18 17 28 28 C 1.29890 * 109.19966 * 359.92897 * 27 26 18 29 29 C 1.47325 * 110.99725 * 170.94039 * 14 2 1 30 30 H 1.08999 * 109.46845 * 299.99884 * 1 2 3 31 31 H 1.08997 * 109.47485 * 59.99832 * 1 2 3 32 32 H 1.09003 * 109.46636 * 179.97438 * 1 2 3 33 33 H 1.08999 * 109.46996 * 184.47111 * 4 2 1 34 34 H 1.08998 * 109.47069 * 304.47002 * 4 2 1 35 35 H 1.08998 * 109.47104 * 294.82245 * 5 4 2 36 36 H 1.08998 * 109.46857 * 54.81723 * 5 4 2 37 37 H 0.97001 * 119.99443 * 180.02562 * 9 8 6 38 38 H 1.09002 * 109.44510 * 285.17610 * 15 14 2 39 39 H 1.09009 * 109.44432 * 45.06379 * 15 14 2 40 40 H 1.08998 * 109.69906 * 289.98308 * 16 15 14 41 41 H 1.09003 * 109.76083 * 169.37857 * 16 15 14 42 42 H 1.08997 * 109.46875 * 35.02379 * 19 18 17 43 43 H 1.08998 * 109.47136 * 155.02482 * 19 18 17 44 44 H 0.96999 * 120.00226 * 0.02562 * 20 19 18 45 45 H 1.08993 * 115.55383 * 34.41579 * 23 21 20 46 46 H 1.09001 * 117.49593 * 359.97438 * 24 23 21 47 47 H 1.08998 * 117.50171 * 145.02231 * 24 23 21 48 48 H 1.09000 * 117.49699 * 214.97939 * 25 23 21 49 49 H 1.08999 * 117.49826 * 359.97359 * 25 23 21 50 50 H 1.07998 * 125.96011 * 179.97438 * 26 18 17 51 51 H 1.08994 * 109.73656 * 293.91840 * 29 14 2 52 52 H 1.08994 * 109.74122 * 54.62405 * 29 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.6239 0.0621 -2.4960 6 6 2.2326 -0.5772 -3.7173 7 1 2.8545 -1.4542 -3.6146 8 6 1.9965 -0.0419 -4.9659 9 7 2.5275 -0.6002 -6.0317 10 14 0.9215 1.4754 -5.1435 11 1 1.7660 2.6935 -5.0541 12 1 0.2350 1.4442 -6.4599 13 1 -0.0912 1.4943 -4.0575 14 7 2.0198 -0.6925 1.1994 15 6 1.6460 0.0379 2.4188 16 6 1.8330 -0.8693 3.6416 17 7 3.1703 -1.4639 3.5712 18 6 3.8819 -2.0749 4.5566 19 6 3.4438 -2.2898 5.9824 20 7 3.7484 -1.0943 6.7724 21 6 3.4423 -1.0575 8.0845 22 8 2.9152 -2.0142 8.6112 23 6 3.7551 0.1726 8.8969 24 6 4.8529 0.0590 9.9566 25 6 3.3852 0.1516 10.3814 26 6 5.0563 -2.4509 4.0090 27 7 5.0542 -2.0756 2.7187 28 6 3.9291 -1.4862 2.4471 29 6 3.4763 -0.9025 1.1300 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 3.1270 -0.7911 -1.2101 34 1 1.6127 -1.7231 -1.2902 35 1 0.5375 0.0535 -2.5847 36 1 1.9734 1.0911 -2.4120 37 1 2.3617 -0.2233 -6.9100 38 1 2.2782 0.9199 2.5215 39 1 0.6025 0.3460 2.3518 40 1 1.0795 -1.6568 3.6334 41 1 1.7398 -0.2811 4.5545 42 1 2.3706 -2.4786 6.0082 43 1 3.9734 -3.1460 6.4001 44 1 4.1696 -0.3288 6.3511 45 1 3.6621 1.1213 8.3685 46 1 5.3485 -0.9056 10.0664 47 1 5.4818 0.9330 10.1256 48 1 3.0491 1.0867 10.8295 49 1 2.9151 -0.7517 10.7702 50 1 5.8582 -2.9642 4.5187 51 1 3.7103 -1.5944 0.3209 52 1 3.9778 0.0497 0.9575 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172498793.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:44:37 Heat of formation + Delta-G solvation = 55.131303 kcal Electronic energy + Delta-G solvation = -30051.921321 eV Core-core repulsion = 26053.183876 eV Total energy + Delta-G solvation = -3998.737445 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.60196 -40.30911 -38.68067 -36.79428 -35.36804 -35.15346 -33.45057 -32.25585 -30.84239 -29.99756 -29.14293 -27.12563 -25.73891 -24.88030 -23.74931 -23.31684 -22.92389 -21.30877 -20.98032 -20.53405 -19.57298 -19.14286 -18.07802 -17.09260 -16.85855 -16.49434 -16.14968 -15.85497 -15.67975 -15.27451 -14.91692 -14.70972 -14.56850 -14.22731 -14.07232 -13.96431 -13.41061 -13.37568 -13.13750 -13.01327 -12.79304 -12.60661 -12.48968 -12.16796 -12.06369 -11.92713 -11.67813 -11.42240 -11.33236 -11.14666 -11.04870 -10.87889 -10.57868 -10.40164 -10.11146 -10.05487 -9.78599 -9.75856 -9.60605 -9.56385 -9.17707 -8.65808 -8.55621 -8.33943 -6.05830 -4.03932 1.60255 2.04017 2.46528 2.74289 3.05908 3.27288 3.35192 3.35514 3.36922 3.51326 4.12193 4.21082 4.22505 4.25214 4.30414 4.36781 4.42290 4.60775 4.65673 4.75058 4.77020 5.02598 5.09401 5.14469 5.19481 5.22115 5.27080 5.29330 5.31155 5.36282 5.42482 5.45157 5.50594 5.60817 5.61851 5.75383 5.88733 5.98874 6.02415 6.14479 6.34863 6.38180 6.44752 6.52839 6.74275 6.87334 6.92415 7.01085 7.05384 7.25078 7.38163 7.75109 7.77274 7.94383 8.52286 8.99895 9.56233 11.07687 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.023717 B = 0.001856 C = 0.001787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1180.308670 B =15080.301502 C =15663.223079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.081 3.919 3 H 0.043 0.957 4 C -0.101 4.101 5 C -0.011 4.011 6 C -0.520 4.520 7 H 0.072 0.928 8 C 0.066 3.934 9 N -0.902 5.902 10 Si 0.879 3.121 11 H -0.278 1.278 12 H -0.288 1.288 13 H -0.266 1.266 14 N -0.536 5.536 15 C 0.034 3.966 16 C 0.110 3.890 17 N -0.443 5.443 18 C -0.058 4.058 19 C 0.204 3.796 20 N -0.724 5.724 21 C 0.543 3.457 22 O -0.540 6.540 23 C -0.197 4.197 24 C -0.152 4.152 25 C -0.147 4.147 26 C 0.002 3.998 27 N -0.485 5.485 28 C 0.234 3.766 29 C 0.135 3.865 30 H 0.044 0.956 31 H 0.070 0.930 32 H 0.064 0.936 33 H 0.059 0.941 34 H 0.064 0.936 35 H 0.019 0.981 36 H 0.008 0.992 37 H 0.263 0.737 38 H 0.045 0.955 39 H 0.104 0.896 40 H 0.092 0.908 41 H 0.088 0.912 42 H 0.074 0.926 43 H 0.092 0.908 44 H 0.403 0.597 45 H 0.123 0.877 46 H 0.100 0.900 47 H 0.105 0.895 48 H 0.103 0.897 49 H 0.108 0.892 50 H 0.171 0.829 51 H 0.120 0.880 52 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.505 4.094 31.236 31.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.025 4.025 3 H 0.061 0.939 4 C -0.139 4.139 5 C -0.049 4.049 6 C -0.558 4.558 7 H 0.090 0.910 8 C -0.135 4.135 9 N -0.541 5.541 10 Si 0.707 3.293 11 H -0.204 1.204 12 H -0.214 1.214 13 H -0.191 1.191 14 N -0.261 5.261 15 C -0.095 4.095 16 C -0.013 4.013 17 N -0.126 5.126 18 C -0.173 4.173 19 C 0.080 3.920 20 N -0.376 5.376 21 C 0.330 3.670 22 O -0.417 6.417 23 C -0.219 4.219 24 C -0.189 4.189 25 C -0.185 4.185 26 C -0.149 4.149 27 N -0.203 5.203 28 C -0.030 4.030 29 C 0.006 3.994 30 H 0.063 0.937 31 H 0.089 0.911 32 H 0.083 0.917 33 H 0.078 0.922 34 H 0.083 0.917 35 H 0.037 0.963 36 H 0.027 0.973 37 H 0.073 0.927 38 H 0.063 0.937 39 H 0.122 0.878 40 H 0.111 0.889 41 H 0.106 0.894 42 H 0.092 0.908 43 H 0.110 0.890 44 H 0.238 0.762 45 H 0.141 0.859 46 H 0.119 0.881 47 H 0.123 0.877 48 H 0.122 0.878 49 H 0.127 0.873 50 H 0.188 0.812 51 H 0.138 0.862 52 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 0.365 2.872 30.899 31.035 hybrid contribution -0.575 2.078 -0.020 2.156 sum -0.210 4.951 30.879 31.274 Atomic orbital electron populations 1.21905 0.94174 1.02672 1.01277 1.21890 0.95897 0.95727 0.89036 0.93888 1.21664 1.00349 0.99725 0.92164 1.19591 0.96711 0.95218 0.93355 1.21134 1.30995 1.14027 0.89674 0.90969 1.25036 0.95553 0.96994 0.95915 1.69918 1.44913 1.40857 0.98440 0.86792 0.81326 0.83724 0.77487 1.20399 1.21409 1.19059 1.62206 1.11833 1.49666 1.02432 1.22493 1.03288 0.94354 0.89355 1.22115 0.81857 0.97856 0.99452 1.45245 1.15013 1.43031 1.09312 1.20783 0.95728 1.08968 0.91804 1.19460 1.01034 0.88208 0.83302 1.46116 1.63283 1.18938 1.09292 1.19695 0.77635 0.88024 0.81634 1.90716 1.42731 1.37236 1.70987 1.22196 1.08739 0.98190 0.92735 1.22968 0.91892 1.04148 0.99889 1.22979 0.97740 1.04509 0.93238 1.22264 0.96824 1.04856 0.90965 1.70047 1.19778 1.15428 1.15080 1.23378 0.88024 1.01789 0.89776 1.20795 0.87279 1.00582 0.90704 0.93668 0.91092 0.91698 0.92215 0.91702 0.96288 0.97328 0.92750 0.93688 0.87793 0.88944 0.89353 0.90760 0.88960 0.76242 0.85876 0.88125 0.87659 0.87833 0.87322 0.81164 0.86188 0.91615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.86 8.88 37.16 0.33 -1.53 16 2 C 0.08 1.16 2.16 -67.71 -0.15 1.01 16 3 H 0.04 0.61 8.13 -51.93 -0.42 0.19 16 4 C -0.10 -1.85 4.26 -26.73 -0.11 -1.97 16 5 C -0.01 -0.25 3.65 -27.88 -0.10 -0.35 16 6 C -0.52 -14.49 9.66 -34.44 -0.33 -14.82 16 7 H 0.07 2.18 7.99 -52.49 -0.42 1.76 16 8 C 0.07 1.90 5.47 -17.82 -0.10 1.80 16 9 N -0.90 -27.62 13.96 55.43 0.77 -26.84 16 10 Si 0.88 21.24 27.47 -169.99 -4.67 16.57 16 11 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 12 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 13 H -0.27 -6.07 6.54 56.52 0.37 -5.70 16 14 N -0.54 -6.72 4.53 -227.21 -1.03 -7.75 16 15 C 0.03 0.32 5.42 -3.58 -0.02 0.30 16 16 C 0.11 0.93 7.08 -3.82 -0.03 0.90 16 17 N -0.44 -4.84 3.14 -109.13 -0.34 -5.18 16 18 C -0.06 -0.59 6.36 -81.90 -0.52 -1.11 16 19 C 0.20 1.69 6.01 -5.19 -0.03 1.66 16 20 N -0.72 -5.21 5.55 -61.47 -0.34 -5.55 16 21 C 0.54 4.69 7.61 -10.98 -0.08 4.61 16 22 O -0.54 -6.70 16.26 5.56 0.09 -6.60 16 23 C -0.20 -1.17 6.19 -91.77 -0.57 -1.74 16 24 C -0.15 -0.76 10.24 -26.69 -0.27 -1.03 16 25 C -0.15 -0.83 10.05 -26.69 -0.27 -1.10 16 26 C 0.00 0.02 11.80 -17.62 -0.21 -0.19 16 27 N -0.49 -7.11 11.24 -10.58 -0.12 -7.22 16 28 C 0.23 3.15 7.76 -155.22 -1.20 1.95 16 29 C 0.14 1.82 4.99 -4.59 -0.02 1.80 16 30 H 0.04 0.47 6.25 -51.93 -0.32 0.14 16 31 H 0.07 1.01 6.67 -51.93 -0.35 0.67 16 32 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.06 1.11 6.17 -51.93 -0.32 0.79 16 34 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 35 H 0.02 0.42 5.87 -51.93 -0.30 0.12 16 36 H 0.01 0.19 7.57 -51.93 -0.39 -0.20 16 37 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 38 H 0.04 0.42 8.07 -51.93 -0.42 0.00 16 39 H 0.10 0.83 5.89 -51.92 -0.31 0.53 16 40 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 41 H 0.09 0.57 8.14 -51.93 -0.42 0.14 16 42 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 43 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 44 H 0.40 2.36 8.46 -40.82 -0.35 2.02 16 45 H 0.12 0.49 8.14 -51.93 -0.42 0.07 16 46 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 47 H 0.11 0.34 8.14 -51.93 -0.42 -0.08 16 48 H 0.10 0.40 8.14 -51.93 -0.42 -0.03 16 49 H 0.11 0.78 7.67 -51.93 -0.40 0.38 16 50 H 0.17 1.58 8.06 -52.49 -0.42 1.16 16 51 H 0.12 1.79 6.52 -51.93 -0.34 1.45 16 52 H 0.07 0.86 8.13 -51.93 -0.42 0.44 16 LS Contribution 411.67 15.07 6.20 6.20 Total: -1.00 -33.85 411.67 -11.70 -45.55 By element: Atomic # 1 Polarization: 9.19 SS G_CDS: -8.58 Total: 0.61 kcal Atomic # 6 Polarization: -6.10 SS G_CDS: -3.69 Total: -9.79 kcal Atomic # 7 Polarization: -51.49 SS G_CDS: -1.06 Total: -52.55 kcal Atomic # 8 Polarization: -6.70 SS G_CDS: 0.09 Total: -6.60 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -4.67 Total: 16.57 kcal Total LS contribution 6.20 Total: 6.20 kcal Total: -33.85 -11.70 -45.55 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172498793.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.684 kcal (2) G-P(sol) polarization free energy of solvation -33.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.553 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds