Wall clock time and date at job start Wed Apr 1 2020 04:44:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09003 * 109.46636 * 2 1 4 4 C 1.52997 * 109.46988 * 240.00199 * 2 1 3 5 5 C 1.53005 * 109.47431 * 64.47031 * 4 2 1 6 6 C 1.50692 * 109.47269 * 174.82187 * 5 4 2 7 7 H 1.08000 * 120.00021 * 359.97438 * 6 5 4 8 8 C 1.37884 * 119.99930 * 180.02562 * 6 5 4 9 9 N 1.31514 * 119.99519 * 180.02562 * 8 6 5 10 10 Si 1.86797 * 119.99965 * 359.97438 * 8 6 5 11 11 H 1.48494 * 109.47031 * 89.99979 * 10 8 6 12 12 H 1.48502 * 109.46790 * 210.00395 * 10 8 6 13 13 H 1.48502 * 109.47042 * 329.99948 * 10 8 6 14 14 N 1.46901 * 109.47318 * 120.00193 * 2 1 3 15 15 C 1.46973 * 110.99761 * 295.12577 * 14 2 1 16 16 C 1.53399 * 109.66003 * 165.12202 * 15 14 2 17 17 N 1.46527 * 108.23639 * 49.66256 * 16 15 14 18 18 C 1.36041 * 128.67096 * 163.55849 * 17 16 15 19 19 C 1.50703 * 126.67907 * 0.24445 * 18 17 16 20 20 N 1.46500 * 109.47258 * 275.02751 * 19 18 17 21 21 C 1.34779 * 120.00087 * 179.97438 * 20 19 18 22 22 O 1.21277 * 120.00033 * 0.02562 * 21 20 19 23 23 C 1.50698 * 119.99919 * 180.02562 * 21 20 19 24 24 C 1.53005 * 117.49741 * 248.74913 * 23 21 20 25 25 C 1.53001 * 117.49666 * 180.09026 * 23 21 20 26 26 C 1.34928 * 106.64497 * 180.24876 * 18 17 16 27 27 N 1.34370 * 108.09215 * 359.96210 * 26 18 17 28 28 C 1.29890 * 109.19966 * 359.92897 * 27 26 18 29 29 C 1.47325 * 110.99725 * 170.94039 * 14 2 1 30 30 H 1.08999 * 109.46845 * 299.99884 * 1 2 3 31 31 H 1.08997 * 109.47485 * 59.99832 * 1 2 3 32 32 H 1.09003 * 109.46636 * 179.97438 * 1 2 3 33 33 H 1.08999 * 109.46996 * 184.47111 * 4 2 1 34 34 H 1.08998 * 109.47069 * 304.47002 * 4 2 1 35 35 H 1.08998 * 109.47104 * 294.82245 * 5 4 2 36 36 H 1.08998 * 109.46857 * 54.81723 * 5 4 2 37 37 H 0.97001 * 119.99443 * 180.02562 * 9 8 6 38 38 H 1.09002 * 109.44510 * 285.17610 * 15 14 2 39 39 H 1.09009 * 109.44432 * 45.06379 * 15 14 2 40 40 H 1.08998 * 109.69906 * 289.98308 * 16 15 14 41 41 H 1.09003 * 109.76083 * 169.37857 * 16 15 14 42 42 H 1.08997 * 109.46875 * 35.02379 * 19 18 17 43 43 H 1.08998 * 109.47136 * 155.02482 * 19 18 17 44 44 H 0.96999 * 120.00226 * 0.02562 * 20 19 18 45 45 H 1.08993 * 115.55383 * 34.41579 * 23 21 20 46 46 H 1.09001 * 117.49593 * 359.97438 * 24 23 21 47 47 H 1.08998 * 117.50171 * 145.02231 * 24 23 21 48 48 H 1.09000 * 117.49699 * 214.97939 * 25 23 21 49 49 H 1.08999 * 117.49826 * 359.97359 * 25 23 21 50 50 H 1.07998 * 125.96011 * 179.97438 * 26 18 17 51 51 H 1.08994 * 109.73656 * 293.91840 * 29 14 2 52 52 H 1.08994 * 109.74122 * 54.62405 * 29 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.6239 0.0621 -2.4960 6 6 2.2326 -0.5772 -3.7173 7 1 2.8545 -1.4542 -3.6146 8 6 1.9965 -0.0419 -4.9659 9 7 2.5275 -0.6002 -6.0317 10 14 0.9215 1.4754 -5.1435 11 1 1.7660 2.6935 -5.0541 12 1 0.2350 1.4442 -6.4599 13 1 -0.0912 1.4943 -4.0575 14 7 2.0198 -0.6925 1.1994 15 6 1.6460 0.0379 2.4188 16 6 1.8330 -0.8693 3.6416 17 7 3.1703 -1.4639 3.5712 18 6 3.8819 -2.0749 4.5566 19 6 3.4438 -2.2898 5.9824 20 7 3.7484 -1.0943 6.7724 21 6 3.4423 -1.0575 8.0845 22 8 2.9152 -2.0142 8.6112 23 6 3.7551 0.1726 8.8969 24 6 4.8529 0.0590 9.9566 25 6 3.3852 0.1516 10.3814 26 6 5.0563 -2.4509 4.0090 27 7 5.0542 -2.0756 2.7187 28 6 3.9291 -1.4862 2.4471 29 6 3.4763 -0.9025 1.1300 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 3.1270 -0.7911 -1.2101 34 1 1.6127 -1.7231 -1.2902 35 1 0.5375 0.0535 -2.5847 36 1 1.9734 1.0911 -2.4120 37 1 2.3617 -0.2233 -6.9100 38 1 2.2782 0.9199 2.5215 39 1 0.6025 0.3460 2.3518 40 1 1.0795 -1.6568 3.6334 41 1 1.7398 -0.2811 4.5545 42 1 2.3706 -2.4786 6.0082 43 1 3.9734 -3.1460 6.4001 44 1 4.1696 -0.3288 6.3511 45 1 3.6621 1.1213 8.3685 46 1 5.3485 -0.9056 10.0664 47 1 5.4818 0.9330 10.1256 48 1 3.0491 1.0867 10.8295 49 1 2.9151 -0.7517 10.7702 50 1 5.8582 -2.9642 4.5187 51 1 3.7103 -1.5944 0.3209 52 1 3.9778 0.0497 0.9575 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172498793.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:44:35 Heat of formation + Delta-G solvation = 32.354103 kcal Electronic energy + Delta-G solvation = -30052.909015 eV Core-core repulsion = 26053.183876 eV Total energy + Delta-G solvation = -3999.725139 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -43.50055 -40.95890 -39.72481 -37.27833 -36.37986 -36.10391 -34.96572 -33.76227 -32.06433 -30.85897 -30.39894 -27.94010 -27.30219 -25.70801 -24.55715 -24.36103 -23.30358 -22.69640 -21.93813 -21.17335 -20.89763 -20.02822 -18.92221 -18.67203 -17.87726 -17.29138 -16.99489 -16.79917 -16.47617 -16.13331 -16.01193 -15.93202 -15.56889 -15.20239 -15.08526 -14.95849 -14.69998 -14.36657 -14.18703 -14.13472 -13.84198 -13.55420 -13.54794 -13.32253 -12.97852 -12.94808 -12.77582 -12.57848 -12.44293 -12.33893 -11.92698 -11.77890 -11.55600 -11.50017 -11.47165 -11.39997 -11.17109 -11.06873 -11.00190 -10.73602 -10.65437 -10.24296 -9.59356 -9.27671 -8.27068 -6.31402 0.74993 1.37088 1.39579 1.42348 1.51243 1.64294 1.90038 2.30949 2.38019 2.54122 2.92023 3.08477 3.29878 3.39685 3.51093 3.70882 3.82514 3.87838 3.97131 4.00053 4.01718 4.09800 4.20155 4.22181 4.28339 4.35432 4.44856 4.48302 4.53725 4.56334 4.67726 4.73375 4.75229 4.78385 4.85897 4.91978 4.94194 5.02882 5.08276 5.09741 5.21380 5.25682 5.28213 5.38973 5.51296 5.62073 5.65943 5.69212 5.86758 5.91234 6.10843 6.31953 6.42345 6.77608 7.01855 7.13018 7.32916 8.90123 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.023717 B = 0.001856 C = 0.001787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1180.308670 B =15080.301502 C =15663.223079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.092 3.908 3 H 0.050 0.950 4 C -0.094 4.094 5 C -0.006 4.006 6 C -0.533 4.533 7 H 0.025 0.975 8 C 0.000 4.000 9 N -0.955 5.955 10 Si 0.953 3.047 11 H -0.267 1.267 12 H -0.287 1.287 13 H -0.238 1.238 14 N -0.541 5.541 15 C 0.034 3.966 16 C 0.108 3.892 17 N -0.438 5.438 18 C -0.036 4.036 19 C 0.211 3.789 20 N -0.712 5.712 21 C 0.541 3.459 22 O -0.583 6.583 23 C -0.200 4.200 24 C -0.144 4.144 25 C -0.153 4.153 26 C -0.019 4.019 27 N -0.522 5.522 28 C 0.212 3.788 29 C 0.140 3.860 30 H 0.080 0.920 31 H 0.059 0.941 32 H 0.057 0.943 33 H 0.046 0.954 34 H 0.048 0.952 35 H 0.028 0.972 36 H 0.019 0.981 37 H 0.265 0.735 38 H 0.052 0.948 39 H 0.127 0.873 40 H 0.097 0.903 41 H 0.118 0.882 42 H 0.075 0.925 43 H 0.093 0.907 44 H 0.413 0.587 45 H 0.149 0.851 46 H 0.088 0.912 47 H 0.128 0.872 48 H 0.125 0.875 49 H 0.086 0.914 50 H 0.187 0.813 51 H 0.092 0.908 52 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.304 7.045 34.094 34.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.015 4.015 3 H 0.068 0.932 4 C -0.132 4.132 5 C -0.043 4.043 6 C -0.571 4.571 7 H 0.044 0.956 8 C -0.197 4.197 9 N -0.596 5.596 10 Si 0.776 3.224 11 H -0.192 1.192 12 H -0.213 1.213 13 H -0.161 1.161 14 N -0.266 5.266 15 C -0.094 4.094 16 C -0.014 4.014 17 N -0.120 5.120 18 C -0.152 4.152 19 C 0.087 3.913 20 N -0.364 5.364 21 C 0.330 3.670 22 O -0.463 6.463 23 C -0.221 4.221 24 C -0.182 4.182 25 C -0.190 4.190 26 C -0.169 4.169 27 N -0.241 5.241 28 C -0.051 4.051 29 C 0.011 3.989 30 H 0.099 0.901 31 H 0.078 0.922 32 H 0.077 0.923 33 H 0.065 0.935 34 H 0.067 0.933 35 H 0.047 0.953 36 H 0.037 0.963 37 H 0.074 0.926 38 H 0.070 0.930 39 H 0.145 0.855 40 H 0.115 0.885 41 H 0.136 0.864 42 H 0.094 0.906 43 H 0.111 0.889 44 H 0.249 0.751 45 H 0.167 0.833 46 H 0.107 0.893 47 H 0.147 0.853 48 H 0.143 0.857 49 H 0.105 0.895 50 H 0.204 0.796 51 H 0.110 0.890 52 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -1.445 5.842 33.774 34.306 hybrid contribution 0.083 1.021 -0.871 1.345 sum -1.362 6.863 32.904 33.639 Atomic orbital electron populations 1.21874 0.92629 1.02671 1.02495 1.21645 0.96914 0.95210 0.87713 0.93184 1.21482 0.99643 0.98947 0.93162 1.19513 0.96678 0.95561 0.92580 1.21543 1.30417 1.12878 0.92299 0.95640 1.26098 0.97273 1.00957 0.95322 1.70097 1.47074 1.43184 0.99207 0.85614 0.79724 0.78859 0.78180 1.19231 1.21330 1.16128 1.62120 1.10980 1.50393 1.03140 1.22634 1.04614 0.94332 0.87782 1.22359 0.80484 0.98192 1.00337 1.45378 1.15605 1.42481 1.08562 1.20945 0.94839 1.07200 0.92206 1.19380 1.01019 0.88781 0.82135 1.45976 1.62726 1.18782 1.08909 1.20184 0.76712 0.88327 0.81808 1.90703 1.44817 1.39005 1.71793 1.22278 1.09368 0.97767 0.92649 1.23052 0.91747 1.04575 0.98798 1.23025 0.98261 1.04577 0.93168 1.22627 0.98250 1.05728 0.90305 1.69973 1.20993 1.16369 1.16804 1.23199 0.88560 1.02982 0.90364 1.20581 0.88141 0.99884 0.90290 0.90138 0.92166 0.92341 0.93508 0.93282 0.95329 0.96311 0.92632 0.92984 0.85540 0.88456 0.86367 0.90646 0.88862 0.75105 0.83306 0.89299 0.85345 0.85732 0.89503 0.79592 0.88952 0.91695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.19 8.88 71.98 0.64 -2.55 16 2 C 0.09 2.47 2.16 44.92 0.10 2.57 16 3 H 0.05 1.29 8.13 -2.39 -0.02 1.27 16 4 C -0.09 -3.52 4.26 30.60 0.13 -3.38 16 5 C -0.01 -0.25 3.65 29.85 0.11 -0.14 16 6 C -0.53 -30.77 9.66 25.60 0.25 -30.53 16 7 H 0.03 1.64 7.99 -2.91 -0.02 1.62 16 8 C 0.00 -0.02 5.47 84.66 0.46 0.44 16 9 N -0.95 -60.53 13.96 21.45 0.30 -60.23 16 10 Si 0.95 43.39 27.47 68.60 1.88 45.27 16 11 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 12 H -0.29 -12.97 7.11 99.48 0.71 -12.26 16 13 H -0.24 -9.71 6.54 99.48 0.65 -9.06 16 14 N -0.54 -12.74 4.53 -872.75 -3.95 -16.69 16 15 C 0.03 0.52 5.42 86.42 0.47 0.99 16 16 C 0.11 1.46 7.08 86.51 0.61 2.08 16 17 N -0.44 -8.77 3.14 -499.16 -1.57 -10.34 16 18 C -0.04 -0.67 6.36 41.15 0.26 -0.41 16 19 C 0.21 3.10 6.01 85.63 0.51 3.62 16 20 N -0.71 -8.57 5.55 -466.79 -2.59 -11.16 16 21 C 0.54 8.38 7.61 87.66 0.67 9.05 16 22 O -0.58 -14.04 16.26 -3.02 -0.05 -14.09 16 23 C -0.20 -1.85 6.19 -11.54 -0.07 -1.92 16 24 C -0.14 -1.12 10.24 30.62 0.31 -0.80 16 25 C -0.15 -1.44 10.05 30.62 0.31 -1.13 16 26 C -0.02 -0.44 11.80 83.54 0.99 0.55 16 27 N -0.52 -15.51 11.24 -187.40 -2.11 -17.61 16 28 C 0.21 5.69 7.76 138.21 1.07 6.76 16 29 C 0.14 3.83 4.99 85.57 0.43 4.25 16 30 H 0.08 1.28 6.25 -2.39 -0.01 1.26 16 31 H 0.06 1.53 6.67 -2.39 -0.02 1.51 16 32 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 33 H 0.05 1.83 6.17 -2.39 -0.01 1.82 16 34 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 35 H 0.03 1.23 5.87 -2.39 -0.01 1.21 16 36 H 0.02 0.80 7.57 -2.39 -0.02 0.78 16 37 H 0.26 15.65 8.31 -92.71 -0.77 14.87 16 38 H 0.05 0.77 8.07 -2.39 -0.02 0.75 16 39 H 0.13 1.39 5.89 -2.38 -0.01 1.38 16 40 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 41 H 0.12 0.97 8.14 -2.39 -0.02 0.95 16 42 H 0.08 1.15 8.14 -2.39 -0.02 1.14 16 43 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 44 H 0.41 3.61 8.46 -92.71 -0.78 2.82 16 45 H 0.15 0.60 8.14 -2.39 -0.02 0.59 16 46 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 47 H 0.13 0.41 8.14 -2.39 -0.02 0.39 16 48 H 0.12 0.61 8.14 -2.39 -0.02 0.59 16 49 H 0.09 1.22 7.67 -2.39 -0.02 1.20 16 50 H 0.19 3.36 8.06 -2.91 -0.02 3.34 16 51 H 0.09 2.97 6.52 -2.39 -0.02 2.96 16 52 H 0.07 1.72 8.13 -2.39 -0.02 1.70 16 Total: -1.00 -77.89 411.67 -0.75 -78.64 By element: Atomic # 1 Polarization: 16.68 SS G_CDS: 0.08 Total: 16.77 kcal Atomic # 6 Polarization: -17.81 SS G_CDS: 7.25 Total: -10.56 kcal Atomic # 7 Polarization: -106.11 SS G_CDS: -9.91 Total: -116.02 kcal Atomic # 8 Polarization: -14.04 SS G_CDS: -0.05 Total: -14.09 kcal Atomic # 14 Polarization: 43.39 SS G_CDS: 1.88 Total: 45.27 kcal Total: -77.89 -0.75 -78.64 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172498793.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.995 kcal (2) G-P(sol) polarization free energy of solvation -77.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.641 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds