Wall clock time and date at job start Wed Apr 1 2020 04:44:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08997 * 109.47321 * 2 1 4 4 C 1.53005 * 109.46860 * 119.99668 * 2 1 3 5 5 C 1.53007 * 109.47155 * 295.35221 * 4 2 1 6 6 C 1.50700 * 109.47004 * 185.15052 * 5 4 2 7 7 H 1.08002 * 119.99860 * 0.02562 * 6 5 4 8 8 C 1.37870 * 119.99516 * 179.97438 * 6 5 4 9 9 N 1.31509 * 120.00561 * 0.02562 * 8 6 5 10 10 Si 1.86802 * 119.99667 * 180.02562 * 8 6 5 11 11 H 1.48500 * 109.47233 * 0.02562 * 10 8 6 12 12 H 1.48503 * 109.47109 * 120.00561 * 10 8 6 13 13 H 1.48498 * 109.47454 * 240.00224 * 10 8 6 14 14 N 1.46895 * 109.47341 * 239.99510 * 2 1 3 15 15 C 1.47073 * 110.99098 * 51.56658 * 14 2 1 16 16 C 1.53407 * 109.60336 * 53.31724 * 15 14 2 17 17 N 1.46527 * 108.27206 * 49.65915 * 16 15 14 18 18 C 1.36037 * 128.67266 * 163.59508 * 17 16 15 19 19 C 1.50700 * 126.67544 * 0.14443 * 18 17 16 20 20 N 1.46497 * 109.47601 * 275.00573 * 19 18 17 21 21 C 1.34778 * 120.00149 * 180.02562 * 20 19 18 22 22 O 1.21277 * 119.99835 * 359.97438 * 21 20 19 23 23 C 1.50705 * 119.99816 * 179.97438 * 21 20 19 24 24 C 1.52994 * 117.49883 * 248.74286 * 23 21 20 25 25 C 1.52996 * 117.49527 * 180.08543 * 23 21 20 26 26 C 1.34934 * 106.64415 * 180.17522 * 18 17 16 27 27 N 1.34365 * 108.09150 * 359.95962 * 26 18 17 28 28 C 1.29892 * 109.20133 * 359.94849 * 27 26 18 29 29 C 1.47319 * 111.00224 * 175.77513 * 14 2 1 30 30 H 1.09004 * 109.47673 * 300.00722 * 1 2 3 31 31 H 1.09001 * 109.47018 * 60.00155 * 1 2 3 32 32 H 1.08997 * 109.47321 * 180.02562 * 1 2 3 33 33 H 1.08997 * 109.47053 * 55.35371 * 4 2 1 34 34 H 1.09000 * 109.47186 * 175.35589 * 4 2 1 35 35 H 1.09000 * 109.47060 * 305.15690 * 5 4 2 36 36 H 1.09007 * 109.46369 * 65.15335 * 5 4 2 37 37 H 0.96999 * 120.00425 * 179.97438 * 9 8 6 38 38 H 1.09002 * 109.49721 * 293.25480 * 15 14 2 39 39 H 1.09001 * 109.43527 * 173.33726 * 15 14 2 40 40 H 1.08994 * 109.71250 * 289.94620 * 16 15 14 41 41 H 1.08998 * 109.70679 * 169.36359 * 16 15 14 42 42 H 1.08997 * 109.47255 * 35.01100 * 19 18 17 43 43 H 1.09001 * 109.46739 * 155.00616 * 19 18 17 44 44 H 0.97004 * 119.99583 * 359.97438 * 20 19 18 45 45 H 1.09000 * 115.54589 * 34.41727 * 23 21 20 46 46 H 1.08999 * 117.49978 * 0.02562 * 24 23 21 47 47 H 1.09004 * 117.49645 * 145.01900 * 24 23 21 48 48 H 1.08998 * 117.49827 * 214.98167 * 25 23 21 49 49 H 1.08993 * 117.50141 * 359.97438 * 25 23 21 50 50 H 1.07997 * 125.95633 * 179.97438 * 26 18 17 51 51 H 1.09006 * 109.74008 * 166.44822 * 29 14 2 52 52 H 1.09000 * 109.73777 * 45.75237 * 29 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 1.6275 0.0645 2.4958 6 6 2.2359 -0.5755 3.7171 7 1 2.8551 -1.4544 3.6144 8 6 2.0028 -0.0383 4.9652 9 7 1.2493 1.0322 5.0902 10 14 2.7575 -0.8311 6.4789 11 1 3.5579 -2.0137 6.0714 12 1 3.6375 0.1492 7.1645 13 1 1.6777 -1.2586 7.4043 14 7 2.0197 -0.6926 -1.1993 15 6 1.3906 -0.1518 -2.4138 16 6 1.5764 1.3704 -2.4555 17 7 2.9910 1.6673 -2.2152 18 6 3.6700 2.8215 -2.4550 19 6 3.1069 4.0931 -3.0353 20 7 3.1211 4.0108 -4.4979 21 6 2.6614 5.0411 -5.2353 22 8 2.2356 6.0361 -4.6881 23 6 2.6766 4.9566 -6.7399 24 6 3.6464 5.8724 -7.4891 25 6 2.1433 6.1596 -7.5204 26 6 4.9460 2.6057 -2.0728 27 7 5.0360 1.3473 -1.6106 28 6 3.8710 0.7785 -1.6903 29 6 3.4888 -0.6251 -1.2851 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 1.6102 -1.7220 1.2920 34 1 3.1267 -0.7939 1.2088 35 1 1.9799 1.0924 2.4105 36 1 0.5412 0.0590 2.5857 37 1 1.0850 1.4099 5.9684 38 1 0.3263 -0.3874 -2.4080 39 1 1.8556 -0.5983 -3.2927 40 1 0.9663 1.8366 -1.6819 41 1 1.2822 1.7499 -3.4340 42 1 2.0822 4.2280 -2.6889 43 1 3.7137 4.9394 -2.7131 44 1 3.4620 3.2151 -4.9355 45 1 2.4960 3.9658 -7.1569 46 1 4.2738 6.5358 -6.8938 47 1 4.1037 5.4843 -8.3993 48 1 1.6121 5.9603 -8.4511 49 1 1.7810 7.0119 -6.9457 50 1 5.7540 3.3201 -2.1284 51 1 3.8470 -1.3342 -2.0315 52 1 3.9254 -0.8598 -0.3143 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172498794.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:44:43 Heat of formation + Delta-G solvation = 54.501746 kcal Electronic energy + Delta-G solvation = -30804.915484 eV Core-core repulsion = 26806.150739 eV Total energy + Delta-G solvation = -3998.764745 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.64406 -40.24121 -38.79474 -36.73093 -35.28513 -34.70371 -33.38228 -32.18492 -30.60832 -30.05044 -28.61635 -27.01438 -25.36240 -24.79796 -23.70030 -23.54401 -22.87367 -21.42138 -21.13725 -20.52272 -20.01327 -18.26214 -17.99589 -17.00603 -16.60854 -16.40718 -15.98218 -15.77569 -15.54940 -15.22975 -14.93425 -14.57371 -14.46458 -14.38404 -14.12253 -13.94815 -13.25442 -13.02770 -12.99375 -12.93622 -12.56059 -12.45938 -12.35272 -12.09553 -12.01058 -11.64261 -11.50731 -11.27133 -11.14997 -11.09394 -10.99258 -10.84991 -10.52375 -10.34979 -10.31102 -10.03214 -9.68910 -9.66151 -9.48005 -9.35600 -9.04554 -8.51536 -8.38033 -8.33217 -5.99779 -4.01650 1.68624 2.11606 2.50932 2.82533 3.15772 3.32062 3.39636 3.41268 3.43948 3.77376 4.19758 4.21127 4.27777 4.35477 4.41703 4.43962 4.47344 4.61411 4.67045 4.79519 4.86843 5.13385 5.14593 5.23475 5.24928 5.29480 5.33511 5.36663 5.39179 5.45792 5.47946 5.55383 5.59692 5.67422 5.72840 5.82502 5.96951 6.09857 6.20394 6.25441 6.50109 6.54786 6.57211 6.65263 6.90445 7.01241 7.10062 7.12614 7.16293 7.66715 7.80218 7.83369 7.99602 8.03260 8.42900 9.05338 9.62575 11.11618 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.016403 B = 0.002201 C = 0.002153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1706.605804 B =12716.233742 C =13000.463582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.074 3.926 3 H 0.040 0.960 4 C -0.101 4.101 5 C 0.025 3.975 6 C -0.518 4.518 7 H 0.056 0.944 8 C 0.056 3.944 9 N -0.896 5.896 10 Si 0.891 3.109 11 H -0.272 1.272 12 H -0.284 1.284 13 H -0.284 1.284 14 N -0.523 5.523 15 C 0.041 3.959 16 C 0.062 3.938 17 N -0.445 5.445 18 C -0.054 4.054 19 C 0.203 3.797 20 N -0.723 5.723 21 C 0.542 3.458 22 O -0.538 6.538 23 C -0.197 4.197 24 C -0.152 4.152 25 C -0.147 4.147 26 C 0.000 4.000 27 N -0.481 5.481 28 C 0.197 3.803 29 C 0.132 3.868 30 H 0.074 0.926 31 H 0.042 0.958 32 H 0.064 0.936 33 H 0.058 0.942 34 H 0.051 0.949 35 H 0.011 0.989 36 H 0.019 0.981 37 H 0.259 0.741 38 H 0.105 0.895 39 H 0.083 0.917 40 H 0.092 0.908 41 H 0.089 0.911 42 H 0.074 0.926 43 H 0.093 0.907 44 H 0.402 0.598 45 H 0.123 0.877 46 H 0.100 0.900 47 H 0.105 0.895 48 H 0.103 0.897 49 H 0.109 0.891 50 H 0.170 0.830 51 H 0.101 0.899 52 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.398 3.931 -27.548 27.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.033 4.033 3 H 0.058 0.942 4 C -0.139 4.139 5 C -0.013 4.013 6 C -0.556 4.556 7 H 0.074 0.926 8 C -0.145 4.145 9 N -0.536 5.536 10 Si 0.719 3.281 11 H -0.197 1.197 12 H -0.211 1.211 13 H -0.210 1.210 14 N -0.245 5.245 15 C -0.088 4.088 16 C -0.062 4.062 17 N -0.129 5.129 18 C -0.169 4.169 19 C 0.079 3.921 20 N -0.375 5.375 21 C 0.329 3.671 22 O -0.415 6.415 23 C -0.218 4.218 24 C -0.189 4.189 25 C -0.185 4.185 26 C -0.150 4.150 27 N -0.199 5.199 28 C -0.067 4.067 29 C 0.002 3.998 30 H 0.093 0.907 31 H 0.061 0.939 32 H 0.083 0.917 33 H 0.077 0.923 34 H 0.070 0.930 35 H 0.029 0.971 36 H 0.037 0.963 37 H 0.069 0.931 38 H 0.123 0.877 39 H 0.101 0.899 40 H 0.110 0.890 41 H 0.107 0.893 42 H 0.092 0.908 43 H 0.111 0.889 44 H 0.237 0.763 45 H 0.141 0.859 46 H 0.119 0.881 47 H 0.123 0.877 48 H 0.122 0.878 49 H 0.127 0.873 50 H 0.188 0.812 51 H 0.119 0.881 52 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 1.401 3.877 -26.682 26.999 hybrid contribution 0.045 0.604 0.398 0.725 sum 1.446 4.481 -26.284 26.703 Atomic orbital electron populations 1.21984 0.94301 1.02580 1.01558 1.21959 0.95628 0.95932 0.89763 0.94207 1.21744 0.99637 0.99501 0.93027 1.19104 0.96753 0.94908 0.90511 1.21269 1.30444 1.12374 0.91500 0.92586 1.25019 0.95314 0.95016 0.99153 1.69966 1.38359 1.21741 1.23486 0.86550 0.79063 0.79422 0.83074 1.19667 1.21054 1.21048 1.62577 1.04293 1.55301 1.02300 1.22627 1.02625 0.89247 0.94317 1.22775 0.79494 1.00591 1.03315 1.45198 1.09770 1.10906 1.46976 1.20791 0.93928 0.89743 1.12424 1.19466 1.01456 0.92404 0.78773 1.46101 1.64901 1.19856 1.06679 1.19701 0.76786 0.82529 0.88105 1.90726 1.46271 1.31194 1.73337 1.22188 1.09873 0.98424 0.91284 1.22962 0.93287 1.01137 1.01544 1.22975 0.96337 0.98129 1.01031 1.22271 0.94790 0.94552 1.03406 1.70070 1.22136 1.07199 1.20505 1.24432 0.85272 0.96253 1.00773 1.21156 0.87972 0.86311 1.04357 0.90739 0.93919 0.91699 0.92343 0.93004 0.97110 0.96299 0.93103 0.87696 0.89895 0.89008 0.89274 0.90751 0.88922 0.76329 0.85908 0.88129 0.87692 0.87842 0.87307 0.81243 0.88086 0.86391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.12 8.22 37.16 0.31 -1.82 16 2 C 0.07 1.18 1.44 -67.72 -0.10 1.09 16 3 H 0.04 0.72 6.18 -51.93 -0.32 0.40 16 4 C -0.10 -2.02 4.65 -26.73 -0.12 -2.15 16 5 C 0.02 0.63 4.59 -27.88 -0.13 0.50 16 6 C -0.52 -14.65 9.11 -34.44 -0.31 -14.97 16 7 H 0.06 1.55 7.74 -52.49 -0.41 1.14 16 8 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 9 N -0.90 -27.05 13.29 55.43 0.74 -26.31 16 10 Si 0.89 21.88 29.54 -169.99 -5.02 16.86 16 11 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 12 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 13 H -0.28 -6.89 7.11 56.52 0.40 -6.48 16 14 N -0.52 -6.75 4.83 -227.13 -1.10 -7.85 16 15 C 0.04 0.39 5.34 -3.52 -0.02 0.37 16 16 C 0.06 0.62 5.97 -3.82 -0.02 0.60 16 17 N -0.45 -5.52 2.88 -109.13 -0.31 -5.83 16 18 C -0.05 -0.65 6.36 -81.90 -0.52 -1.17 16 19 C 0.20 2.09 6.01 -5.20 -0.03 2.06 16 20 N -0.72 -6.15 5.55 -61.47 -0.34 -6.49 16 21 C 0.54 5.33 7.61 -10.98 -0.08 5.25 16 22 O -0.54 -7.45 16.26 5.56 0.09 -7.36 16 23 C -0.20 -1.32 6.19 -91.77 -0.57 -1.89 16 24 C -0.15 -0.86 10.24 -26.70 -0.27 -1.14 16 25 C -0.15 -0.94 10.05 -26.70 -0.27 -1.21 16 26 C 0.00 0.01 11.80 -17.62 -0.21 -0.20 16 27 N -0.48 -7.65 11.24 -10.58 -0.12 -7.77 16 28 C 0.20 2.85 7.02 -155.22 -1.09 1.76 16 29 C 0.13 1.75 6.07 -4.59 -0.03 1.72 16 30 H 0.07 1.25 6.67 -51.93 -0.35 0.90 16 31 H 0.04 0.49 5.48 -51.93 -0.28 0.20 16 32 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 34 H 0.05 1.05 6.06 -51.93 -0.31 0.74 16 35 H 0.01 0.29 8.14 -51.93 -0.42 -0.13 16 36 H 0.02 0.50 6.81 -51.92 -0.35 0.14 16 37 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 38 H 0.10 0.88 6.64 -51.93 -0.34 0.54 16 39 H 0.08 0.69 8.07 -51.93 -0.42 0.27 16 40 H 0.09 1.03 6.13 -51.93 -0.32 0.71 16 41 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 43 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 44 H 0.40 2.76 8.46 -40.82 -0.35 2.41 16 45 H 0.12 0.57 8.14 -51.93 -0.42 0.15 16 46 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 47 H 0.10 0.40 8.14 -51.93 -0.42 -0.03 16 48 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 49 H 0.11 0.88 7.67 -51.93 -0.40 0.48 16 50 H 0.17 1.89 8.06 -52.49 -0.42 1.46 16 51 H 0.10 1.11 8.14 -51.93 -0.42 0.69 16 52 H 0.12 1.77 5.84 -51.93 -0.30 1.47 16 LS Contribution 408.71 15.07 6.16 6.16 Total: -1.00 -34.26 408.71 -11.84 -46.10 By element: Atomic # 1 Polarization: 10.53 SS G_CDS: -8.36 Total: 2.17 kcal Atomic # 6 Polarization: -6.10 SS G_CDS: -3.57 Total: -9.67 kcal Atomic # 7 Polarization: -53.12 SS G_CDS: -1.14 Total: -54.26 kcal Atomic # 8 Polarization: -7.45 SS G_CDS: 0.09 Total: -7.36 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -34.26 -11.84 -46.10 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172498794.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.598 kcal (2) G-P(sol) polarization free energy of solvation -34.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.096 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds