Wall clock time and date at job start Wed Apr 1 2020 04:44:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08997 * 109.47321 * 2 1 4 4 C 1.53005 * 109.46860 * 119.99668 * 2 1 3 5 5 C 1.53007 * 109.47155 * 295.35221 * 4 2 1 6 6 C 1.50700 * 109.47004 * 185.15052 * 5 4 2 7 7 H 1.08002 * 119.99860 * 0.02562 * 6 5 4 8 8 C 1.37870 * 119.99516 * 179.97438 * 6 5 4 9 9 N 1.31509 * 120.00561 * 0.02562 * 8 6 5 10 10 Si 1.86802 * 119.99667 * 180.02562 * 8 6 5 11 11 H 1.48500 * 109.47233 * 0.02562 * 10 8 6 12 12 H 1.48503 * 109.47109 * 120.00561 * 10 8 6 13 13 H 1.48498 * 109.47454 * 240.00224 * 10 8 6 14 14 N 1.46895 * 109.47341 * 239.99510 * 2 1 3 15 15 C 1.47073 * 110.99098 * 51.56658 * 14 2 1 16 16 C 1.53407 * 109.60336 * 53.31724 * 15 14 2 17 17 N 1.46527 * 108.27206 * 49.65915 * 16 15 14 18 18 C 1.36037 * 128.67266 * 163.59508 * 17 16 15 19 19 C 1.50700 * 126.67544 * 0.14443 * 18 17 16 20 20 N 1.46497 * 109.47601 * 275.00573 * 19 18 17 21 21 C 1.34778 * 120.00149 * 180.02562 * 20 19 18 22 22 O 1.21277 * 119.99835 * 359.97438 * 21 20 19 23 23 C 1.50705 * 119.99816 * 179.97438 * 21 20 19 24 24 C 1.52994 * 117.49883 * 248.74286 * 23 21 20 25 25 C 1.52996 * 117.49527 * 180.08543 * 23 21 20 26 26 C 1.34934 * 106.64415 * 180.17522 * 18 17 16 27 27 N 1.34365 * 108.09150 * 359.95962 * 26 18 17 28 28 C 1.29892 * 109.20133 * 359.94849 * 27 26 18 29 29 C 1.47319 * 111.00224 * 175.77513 * 14 2 1 30 30 H 1.09004 * 109.47673 * 300.00722 * 1 2 3 31 31 H 1.09001 * 109.47018 * 60.00155 * 1 2 3 32 32 H 1.08997 * 109.47321 * 180.02562 * 1 2 3 33 33 H 1.08997 * 109.47053 * 55.35371 * 4 2 1 34 34 H 1.09000 * 109.47186 * 175.35589 * 4 2 1 35 35 H 1.09000 * 109.47060 * 305.15690 * 5 4 2 36 36 H 1.09007 * 109.46369 * 65.15335 * 5 4 2 37 37 H 0.96999 * 120.00425 * 179.97438 * 9 8 6 38 38 H 1.09002 * 109.49721 * 293.25480 * 15 14 2 39 39 H 1.09001 * 109.43527 * 173.33726 * 15 14 2 40 40 H 1.08994 * 109.71250 * 289.94620 * 16 15 14 41 41 H 1.08998 * 109.70679 * 169.36359 * 16 15 14 42 42 H 1.08997 * 109.47255 * 35.01100 * 19 18 17 43 43 H 1.09001 * 109.46739 * 155.00616 * 19 18 17 44 44 H 0.97004 * 119.99583 * 359.97438 * 20 19 18 45 45 H 1.09000 * 115.54589 * 34.41727 * 23 21 20 46 46 H 1.08999 * 117.49978 * 0.02562 * 24 23 21 47 47 H 1.09004 * 117.49645 * 145.01900 * 24 23 21 48 48 H 1.08998 * 117.49827 * 214.98167 * 25 23 21 49 49 H 1.08993 * 117.50141 * 359.97438 * 25 23 21 50 50 H 1.07997 * 125.95633 * 179.97438 * 26 18 17 51 51 H 1.09006 * 109.74008 * 166.44822 * 29 14 2 52 52 H 1.09000 * 109.73777 * 45.75237 * 29 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 1.6275 0.0645 2.4958 6 6 2.2359 -0.5755 3.7171 7 1 2.8551 -1.4544 3.6144 8 6 2.0028 -0.0383 4.9652 9 7 1.2493 1.0322 5.0902 10 14 2.7575 -0.8311 6.4789 11 1 3.5579 -2.0137 6.0714 12 1 3.6375 0.1492 7.1645 13 1 1.6777 -1.2586 7.4043 14 7 2.0197 -0.6926 -1.1993 15 6 1.3906 -0.1518 -2.4138 16 6 1.5764 1.3704 -2.4555 17 7 2.9910 1.6673 -2.2152 18 6 3.6700 2.8215 -2.4550 19 6 3.1069 4.0931 -3.0353 20 7 3.1211 4.0108 -4.4979 21 6 2.6614 5.0411 -5.2353 22 8 2.2356 6.0361 -4.6881 23 6 2.6766 4.9566 -6.7399 24 6 3.6464 5.8724 -7.4891 25 6 2.1433 6.1596 -7.5204 26 6 4.9460 2.6057 -2.0728 27 7 5.0360 1.3473 -1.6106 28 6 3.8710 0.7785 -1.6903 29 6 3.4888 -0.6251 -1.2851 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 1.6102 -1.7220 1.2920 34 1 3.1267 -0.7939 1.2088 35 1 1.9799 1.0924 2.4105 36 1 0.5412 0.0590 2.5857 37 1 1.0850 1.4099 5.9684 38 1 0.3263 -0.3874 -2.4080 39 1 1.8556 -0.5983 -3.2927 40 1 0.9663 1.8366 -1.6819 41 1 1.2822 1.7499 -3.4340 42 1 2.0822 4.2280 -2.6889 43 1 3.7137 4.9394 -2.7131 44 1 3.4620 3.2151 -4.9355 45 1 2.4960 3.9658 -7.1569 46 1 4.2738 6.5358 -6.8938 47 1 4.1037 5.4843 -8.3993 48 1 1.6121 5.9603 -8.4511 49 1 1.7810 7.0119 -6.9457 50 1 5.7540 3.3201 -2.1284 51 1 3.8470 -1.3342 -2.0315 52 1 3.9254 -0.8598 -0.3143 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172498794.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:44:40 Heat of formation + Delta-G solvation = 31.389564 kcal Electronic energy + Delta-G solvation = -30805.917703 eV Core-core repulsion = 26806.150739 eV Total energy + Delta-G solvation = -3999.766964 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -43.65416 -41.00560 -39.91031 -37.30357 -36.23523 -36.15118 -34.83167 -33.76358 -31.83728 -31.00907 -30.10557 -27.93832 -27.07278 -25.70259 -24.95741 -24.42413 -23.31973 -22.94138 -22.17292 -21.46014 -21.11250 -19.43550 -18.73754 -18.46004 -17.88915 -17.46293 -16.97107 -16.87496 -16.52121 -16.37624 -16.10547 -15.76328 -15.69770 -15.31849 -15.07759 -15.01147 -14.40899 -14.26305 -14.12335 -13.91113 -13.78321 -13.60291 -13.57433 -13.39170 -13.06960 -12.91751 -12.68155 -12.61576 -12.45779 -12.43393 -12.30571 -11.82113 -11.57578 -11.51504 -11.47856 -11.33279 -11.17132 -11.05522 -11.05160 -10.65987 -10.56381 -10.30029 -9.60729 -9.38683 -8.22207 -6.32596 0.71423 1.37366 1.38178 1.39082 1.51423 1.57119 1.89699 2.26572 2.38753 2.73524 2.90013 3.11184 3.24522 3.33933 3.54174 3.68405 3.80542 3.84589 3.86619 3.94229 3.97307 4.02810 4.14987 4.18172 4.27520 4.34102 4.39281 4.47862 4.51748 4.58078 4.71793 4.73842 4.78975 4.81325 4.90205 4.90705 4.95303 5.01150 5.02811 5.17793 5.19272 5.22776 5.24539 5.35903 5.49658 5.62005 5.71553 5.83397 5.87211 5.93078 6.05794 6.25003 6.39687 6.84598 6.99143 7.10118 7.36606 8.89646 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.016403 B = 0.002201 C = 0.002153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1706.605804 B =12716.233742 C =13000.463582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.089 3.911 3 H 0.015 0.985 4 C -0.089 4.089 5 C 0.033 3.967 6 C -0.540 4.540 7 H 0.059 0.941 8 C -0.002 4.002 9 N -0.933 5.933 10 Si 0.963 3.037 11 H -0.261 1.261 12 H -0.281 1.281 13 H -0.275 1.275 14 N -0.518 5.518 15 C 0.042 3.958 16 C 0.059 3.941 17 N -0.443 5.443 18 C -0.041 4.041 19 C 0.211 3.789 20 N -0.709 5.709 21 C 0.539 3.461 22 O -0.585 6.585 23 C -0.198 4.198 24 C -0.143 4.143 25 C -0.153 4.153 26 C -0.021 4.021 27 N -0.517 5.517 28 C 0.181 3.819 29 C 0.134 3.866 30 H 0.043 0.957 31 H 0.078 0.922 32 H 0.073 0.927 33 H 0.062 0.938 34 H 0.044 0.956 35 H -0.026 1.026 36 H 0.002 0.998 37 H 0.263 0.737 38 H 0.126 0.874 39 H 0.108 0.892 40 H 0.079 0.921 41 H 0.119 0.881 42 H 0.067 0.933 43 H 0.089 0.911 44 H 0.414 0.586 45 H 0.152 0.848 46 H 0.087 0.913 47 H 0.132 0.868 48 H 0.127 0.873 49 H 0.084 0.916 50 H 0.184 0.816 51 H 0.128 0.872 52 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.211 2.433 -30.115 30.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.018 4.018 3 H 0.033 0.967 4 C -0.127 4.127 5 C -0.004 4.004 6 C -0.578 4.578 7 H 0.077 0.923 8 C -0.199 4.199 9 N -0.574 5.574 10 Si 0.787 3.213 11 H -0.185 1.185 12 H -0.207 1.207 13 H -0.201 1.201 14 N -0.240 5.240 15 C -0.086 4.086 16 C -0.064 4.064 17 N -0.126 5.126 18 C -0.156 4.156 19 C 0.087 3.913 20 N -0.361 5.361 21 C 0.327 3.673 22 O -0.466 6.466 23 C -0.219 4.219 24 C -0.180 4.180 25 C -0.191 4.191 26 C -0.171 4.171 27 N -0.236 5.236 28 C -0.084 4.084 29 C 0.004 3.996 30 H 0.062 0.938 31 H 0.096 0.904 32 H 0.092 0.908 33 H 0.081 0.919 34 H 0.063 0.937 35 H -0.007 1.007 36 H 0.020 0.980 37 H 0.071 0.929 38 H 0.144 0.856 39 H 0.126 0.874 40 H 0.097 0.903 41 H 0.137 0.863 42 H 0.085 0.915 43 H 0.107 0.893 44 H 0.251 0.749 45 H 0.170 0.830 46 H 0.105 0.895 47 H 0.150 0.850 48 H 0.145 0.855 49 H 0.103 0.897 50 H 0.201 0.799 51 H 0.146 0.854 52 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 1.216 2.340 -29.282 29.400 hybrid contribution 0.113 1.133 1.177 1.637 sum 1.328 3.473 -28.105 28.350 Atomic orbital electron populations 1.21913 0.92908 1.03179 1.01822 1.21571 0.96529 0.94075 0.89674 0.96694 1.21502 0.99268 0.99117 0.92839 1.18945 0.95329 0.93504 0.92658 1.21730 1.30592 1.12637 0.92859 0.92310 1.25972 0.95732 0.95540 1.02687 1.70097 1.39644 1.23172 1.24447 0.85433 0.78375 0.78676 0.78802 1.18495 1.20692 1.20080 1.62505 1.04217 1.54837 1.02414 1.22834 1.03803 0.88751 0.93239 1.22973 0.77888 1.01044 1.04468 1.45332 1.10492 1.10511 1.46239 1.20935 0.93465 0.89922 1.11324 1.19300 1.00729 0.91374 0.79938 1.45932 1.64320 1.20140 1.05714 1.20306 0.75680 0.81733 0.89542 1.90710 1.48418 1.32973 1.74463 1.22266 1.10768 1.00034 0.88834 1.23057 0.92758 1.00225 1.01964 1.23030 0.97242 0.97222 1.01582 1.22608 0.96076 0.94345 1.04089 1.70009 1.23518 1.08485 1.21615 1.24563 0.85487 0.96932 1.01391 1.21169 0.88058 0.86522 1.03850 0.93813 0.90358 0.90836 0.91932 0.93735 1.00728 0.97966 0.92863 0.85565 0.87409 0.90279 0.86284 0.91497 0.89275 0.74935 0.82995 0.89479 0.85015 0.85475 0.89743 0.79893 0.85396 0.88867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.96 8.22 71.98 0.59 -3.36 16 2 C 0.09 2.85 1.44 44.92 0.06 2.92 16 3 H 0.02 0.56 6.18 -2.39 -0.01 0.54 16 4 C -0.09 -3.67 4.65 30.60 0.14 -3.53 16 5 C 0.03 1.77 4.59 29.85 0.14 1.90 16 6 C -0.54 -31.41 9.11 25.60 0.23 -31.18 16 7 H 0.06 3.30 7.74 -2.91 -0.02 3.28 16 8 C 0.00 -0.11 5.46 84.65 0.46 0.36 16 9 N -0.93 -57.90 13.29 21.44 0.28 -57.61 16 10 Si 0.96 45.36 29.54 68.60 2.03 47.39 16 11 H -0.26 -11.73 7.11 99.48 0.71 -11.02 16 12 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 13 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 14 N -0.52 -12.47 4.83 -872.50 -4.22 -16.69 16 15 C 0.04 0.66 5.34 86.41 0.46 1.12 16 16 C 0.06 1.04 5.97 86.51 0.52 1.56 16 17 N -0.44 -10.49 2.88 -499.17 -1.44 -11.92 16 18 C -0.04 -0.96 6.36 41.15 0.26 -0.70 16 19 C 0.21 4.24 6.01 85.63 0.51 4.76 16 20 N -0.71 -10.96 5.55 -466.79 -2.59 -13.55 16 21 C 0.54 10.02 7.61 87.66 0.67 10.68 16 22 O -0.59 -16.35 16.26 -3.02 -0.05 -16.40 16 23 C -0.20 -2.20 6.19 -11.54 -0.07 -2.27 16 24 C -0.14 -1.31 10.24 30.61 0.31 -1.00 16 25 C -0.15 -1.70 10.05 30.62 0.31 -1.40 16 26 C -0.02 -0.58 11.80 83.55 0.99 0.41 16 27 N -0.52 -16.63 11.24 -187.40 -2.11 -18.74 16 28 C 0.18 5.15 7.02 138.21 0.97 6.12 16 29 C 0.13 3.44 6.07 85.58 0.52 3.96 16 30 H 0.04 1.50 6.67 -2.38 -0.02 1.48 16 31 H 0.08 1.61 5.48 -2.39 -0.01 1.60 16 32 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 33 H 0.06 2.50 8.14 -2.39 -0.02 2.48 16 34 H 0.04 1.87 6.06 -2.39 -0.01 1.86 16 35 H -0.03 -1.53 8.14 -2.39 -0.02 -1.55 16 36 H 0.00 0.11 6.81 -2.38 -0.02 0.10 16 37 H 0.26 15.28 8.31 -92.71 -0.77 14.51 16 38 H 0.13 1.54 6.64 -2.39 -0.02 1.52 16 39 H 0.11 1.29 8.07 -2.39 -0.02 1.27 16 40 H 0.08 1.65 6.13 -2.39 -0.01 1.63 16 41 H 0.12 1.42 8.14 -2.39 -0.02 1.40 16 42 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 43 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 44 H 0.41 4.63 8.46 -92.71 -0.78 3.85 16 45 H 0.15 0.80 8.14 -2.39 -0.02 0.78 16 46 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 47 H 0.13 0.53 8.14 -2.38 -0.02 0.51 16 48 H 0.13 0.78 8.14 -2.39 -0.02 0.76 16 49 H 0.08 1.37 7.67 -2.39 -0.02 1.36 16 50 H 0.18 4.12 8.06 -2.91 -0.02 4.10 16 51 H 0.13 2.56 8.14 -2.38 -0.02 2.54 16 52 H 0.09 2.86 5.84 -2.39 -0.01 2.85 16 Total: -1.00 -78.34 408.71 -0.86 -79.20 By element: Atomic # 1 Polarization: 17.83 SS G_CDS: 0.15 Total: 17.98 kcal Atomic # 6 Polarization: -16.73 SS G_CDS: 7.08 Total: -9.66 kcal Atomic # 7 Polarization: -108.45 SS G_CDS: -10.06 Total: -118.51 kcal Atomic # 8 Polarization: -16.35 SS G_CDS: -0.05 Total: -16.40 kcal Atomic # 14 Polarization: 45.36 SS G_CDS: 2.03 Total: 47.39 kcal Total: -78.34 -0.86 -79.20 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172498794.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.590 kcal (2) G-P(sol) polarization free energy of solvation -78.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.200 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds