Wall clock time and date at job start Wed Apr 1 2020 04:42:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09006 * 109.47203 * 2 1 4 4 C 1.52996 * 109.47072 * 239.99535 * 2 1 3 5 5 C 1.52998 * 109.46929 * 65.00234 * 4 2 1 6 6 C 1.50706 * 109.47348 * 179.97438 * 5 4 2 7 7 H 1.08000 * 119.99302 * 359.97438 * 6 5 4 8 8 C 1.37871 * 120.00436 * 179.72505 * 6 5 4 9 9 N 1.31514 * 120.00481 * 180.02562 * 8 6 5 10 10 Si 1.86801 * 119.99745 * 359.97438 * 8 6 5 11 11 H 1.48504 * 109.47209 * 90.00365 * 10 8 6 12 12 H 1.48506 * 109.47294 * 210.00213 * 10 8 6 13 13 H 1.48501 * 109.47275 * 330.00116 * 10 8 6 14 14 N 1.46506 * 109.47313 * 119.99745 * 2 1 3 15 15 N 1.28936 * 125.00070 * 60.02225 * 14 2 1 16 16 C 1.32272 * 110.17118 * 179.88053 * 15 14 2 17 17 C 1.47704 * 126.68407 * 179.97438 * 16 15 14 18 18 O 1.21569 * 120.00258 * 180.02562 * 17 16 15 19 19 N 1.34774 * 119.99993 * 0.02562 * 17 16 15 20 20 C 1.46504 * 120.00358 * 179.97438 * 19 17 16 21 21 C 1.53001 * 109.47065 * 180.02562 * 20 19 17 22 22 C 1.52997 * 117.49541 * 243.74527 * 21 20 19 23 23 C 1.53002 * 117.49301 * 175.08699 * 21 20 19 24 24 C 1.40304 * 106.63705 * 359.97438 * 16 15 14 25 25 C 1.34034 * 125.00135 * 239.72121 * 14 2 1 26 26 C 1.50765 * 129.79715 * 0.97709 * 25 14 2 27 27 C 1.53557 * 107.84453 * 163.59439 * 26 25 14 28 28 N 1.46935 * 109.79075 * 49.05113 * 27 26 25 29 29 C 1.47406 * 111.47628 * 288.65902 * 28 27 26 30 30 H 1.09002 * 109.47027 * 300.00165 * 1 2 3 31 31 H 1.08999 * 109.46938 * 59.99866 * 1 2 3 32 32 H 1.08995 * 109.47123 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.47441 * 305.00324 * 4 2 1 34 34 H 1.09002 * 109.47087 * 184.99770 * 4 2 1 35 35 H 1.09001 * 109.47671 * 60.00109 * 5 4 2 36 36 H 1.08998 * 109.47454 * 300.00107 * 5 4 2 37 37 H 0.96995 * 120.00207 * 179.97438 * 9 8 6 38 38 H 0.97002 * 119.99841 * 359.97438 * 19 17 16 39 39 H 1.09002 * 109.46476 * 299.99870 * 20 19 17 40 40 H 1.08996 * 109.47021 * 60.00052 * 20 19 17 41 41 H 1.08995 * 115.55175 * 29.41617 * 21 20 19 42 42 H 1.08999 * 117.49997 * 0.02562 * 22 21 20 43 43 H 1.08995 * 117.49837 * 145.02649 * 22 21 20 44 44 H 1.08997 * 117.49192 * 214.97486 * 23 21 20 45 45 H 1.08997 * 117.50511 * 359.97438 * 23 21 20 46 46 H 1.09004 * 109.93988 * 43.90666 * 26 25 14 47 47 H 1.08999 * 109.65406 * 283.11521 * 26 25 14 48 48 H 1.09003 * 109.41794 * 288.94732 * 27 26 25 49 49 H 1.08997 * 109.36358 * 169.11780 * 27 26 25 50 50 H 1.00897 * 110.99971 * 52.95998 * 28 27 26 51 51 H 1.09001 * 109.72221 * 291.19916 * 29 28 27 52 52 H 1.09001 * 109.72260 * 170.53576 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.6352 0.0688 -2.4952 6 6 2.1381 -0.6413 -3.7257 7 1 2.6914 -1.5637 -3.6285 8 6 1.8874 -0.1162 -4.9756 9 7 2.3257 -0.7362 -6.0495 10 14 0.9237 1.4751 -5.1440 11 1 1.8614 2.6264 -5.1215 12 1 0.1782 1.4690 -6.4283 13 1 -0.0347 1.5952 -4.0160 14 7 2.0184 -0.6906 1.1962 15 7 1.7674 -1.9195 1.4950 16 6 2.3552 -2.2408 2.6356 17 6 2.3079 -3.5520 3.3139 18 8 2.8966 -3.7141 4.3651 19 7 1.6121 -4.5686 2.7675 20 6 1.5656 -5.8694 3.4400 21 6 0.7163 -6.8394 2.6161 22 6 -0.5711 -7.3670 3.2526 23 6 0.6389 -8.2910 3.0933 24 6 3.0325 -1.0935 3.0755 25 6 2.7966 -0.1396 2.1382 26 6 3.3403 1.2628 2.2418 27 6 3.8123 1.4790 3.6869 28 7 4.6613 0.3554 4.1063 29 6 3.8715 -0.8735 4.3034 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 1.6053 -1.7199 -1.2951 34 1 3.1263 -0.7995 -1.2055 35 1 2.0699 1.0674 -2.4495 36 1 0.5489 0.1471 -2.5389 37 1 2.1490 -0.3669 -6.9288 38 1 1.1420 -4.4391 1.9289 39 1 2.5768 -6.2645 3.5370 40 1 1.1252 -5.7510 4.4300 41 1 0.7101 -6.6621 1.5407 42 1 -0.8132 -7.0227 4.2580 43 1 -1.4241 -7.5372 2.5958 44 1 0.5813 -9.0686 2.3317 45 1 1.1932 -8.5551 3.9938 46 1 2.5598 1.9832 1.9966 47 1 4.1803 1.3818 1.5574 48 1 2.9459 1.5440 4.3452 49 1 4.3826 2.4059 3.7460 50 1 5.4100 0.2024 3.4475 51 1 3.2264 -0.7604 5.1747 52 1 4.5408 -1.7216 4.4482 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172498953.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:42:50 Heat of formation + Delta-G solvation = 29.936047 kcal Electronic energy + Delta-G solvation = -30670.031718 eV Core-core repulsion = 26670.201725 eV Total energy + Delta-G solvation = -3999.829993 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -43.98187 -40.61174 -38.67117 -38.39679 -37.49832 -35.24737 -34.99598 -33.34642 -31.93264 -31.09762 -30.41538 -28.35166 -27.43206 -25.43122 -25.26661 -23.91388 -23.28368 -23.01994 -22.05235 -21.58845 -20.69385 -20.34839 -19.07401 -18.55217 -17.49032 -17.32963 -17.26139 -16.38163 -16.32068 -16.21726 -16.00821 -15.83014 -15.60716 -15.13408 -14.90122 -14.69996 -14.59476 -14.55838 -14.39060 -14.11645 -13.96772 -13.80141 -13.43388 -13.26176 -12.99896 -12.59944 -12.56031 -12.45039 -12.41054 -12.38971 -12.01731 -11.94002 -11.90700 -11.71403 -11.59855 -11.56175 -11.37992 -11.21194 -11.08958 -10.77588 -10.30710 -10.01141 -9.68859 -9.53393 -8.30437 -6.36666 0.48012 0.99012 1.36395 1.37617 1.40386 1.51308 2.06215 2.28963 2.35925 2.85099 3.05249 3.15431 3.38708 3.44697 3.62925 3.67093 3.80077 3.90501 3.94872 4.00811 4.04023 4.06290 4.20813 4.23264 4.34165 4.46452 4.52051 4.57969 4.61177 4.64867 4.67940 4.70575 4.75335 4.77907 4.82767 4.89814 4.90780 4.98754 5.00257 5.11453 5.11911 5.16606 5.23811 5.35110 5.35575 5.37888 5.48329 5.61556 5.82840 5.96426 6.24304 6.33438 6.40789 6.71540 6.86269 7.08588 7.27934 8.86789 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.007520 B = 0.003173 C = 0.002372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3722.689926 B = 8821.771551 C =11800.183031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.144 3.856 3 H 0.132 0.868 4 C -0.095 4.095 5 C -0.003 4.003 6 C -0.536 4.536 7 H 0.021 0.979 8 C 0.001 3.999 9 N -0.955 5.955 10 Si 0.954 3.046 11 H -0.264 1.264 12 H -0.289 1.289 13 H -0.232 1.232 14 N -0.253 5.253 15 N -0.274 5.274 16 C -0.034 4.034 17 C 0.605 3.395 18 O -0.560 6.560 19 N -0.709 5.709 20 C 0.154 3.846 21 C -0.182 4.182 22 C -0.174 4.174 23 C -0.162 4.162 24 C -0.208 4.208 25 C 0.010 3.990 26 C -0.086 4.086 27 C 0.067 3.933 28 N -0.683 5.683 29 C 0.148 3.852 30 H 0.074 0.926 31 H 0.092 0.908 32 H 0.059 0.941 33 H 0.051 0.949 34 H 0.041 0.959 35 H 0.032 0.968 36 H 0.038 0.962 37 H 0.266 0.734 38 H 0.412 0.588 39 H 0.067 0.933 40 H 0.070 0.930 41 H 0.110 0.890 42 H 0.099 0.901 43 H 0.103 0.897 44 H 0.107 0.893 45 H 0.104 0.896 46 H 0.106 0.894 47 H 0.093 0.907 48 H 0.075 0.925 49 H 0.113 0.887 50 H 0.347 0.653 51 H 0.080 0.920 52 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.146 -0.379 22.078 22.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.045 3.955 3 H 0.149 0.851 4 C -0.133 4.133 5 C -0.041 4.041 6 C -0.574 4.574 7 H 0.039 0.961 8 C -0.195 4.195 9 N -0.595 5.595 10 Si 0.776 3.224 11 H -0.189 1.189 12 H -0.216 1.216 13 H -0.155 1.155 14 N -0.040 5.040 15 N -0.110 5.110 16 C -0.192 4.192 17 C 0.391 3.609 18 O -0.438 6.438 19 N -0.361 5.361 20 C 0.031 3.969 21 C -0.201 4.201 22 C -0.210 4.210 23 C -0.199 4.199 24 C -0.220 4.220 25 C -0.117 4.117 26 C -0.126 4.126 27 C -0.063 4.063 28 N -0.311 5.311 29 C 0.018 3.982 30 H 0.093 0.907 31 H 0.111 0.889 32 H 0.078 0.922 33 H 0.070 0.930 34 H 0.060 0.940 35 H 0.050 0.950 36 H 0.056 0.944 37 H 0.075 0.925 38 H 0.248 0.752 39 H 0.085 0.915 40 H 0.088 0.912 41 H 0.128 0.872 42 H 0.118 0.882 43 H 0.121 0.879 44 H 0.125 0.875 45 H 0.122 0.878 46 H 0.124 0.876 47 H 0.112 0.888 48 H 0.094 0.906 49 H 0.131 0.869 50 H 0.165 0.835 51 H 0.098 0.902 52 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -4.468 -0.736 22.396 22.849 hybrid contribution -0.057 -0.074 -1.782 1.784 sum -4.525 -0.810 20.614 21.120 Atomic orbital electron populations 1.22127 0.91514 1.03603 1.03989 1.22007 0.97173 0.96369 0.79934 0.85051 1.21576 0.99495 0.99416 0.92816 1.19514 0.97451 0.95746 0.91367 1.21417 1.35302 1.08904 0.91821 0.96051 1.26110 0.96586 1.01691 0.95126 1.70088 1.48317 1.42215 0.98900 0.85609 0.79602 0.78575 0.78580 1.18921 1.21559 1.15501 1.45672 1.33762 1.06700 1.17845 1.73765 1.22776 0.98922 1.15562 1.21521 1.05654 0.96356 0.95698 1.16953 0.78376 0.82158 0.83451 1.90735 1.46483 1.83243 1.23324 1.45862 1.51803 1.11334 1.27062 1.20956 0.99930 0.80734 0.95272 1.22391 1.01386 0.96475 0.99840 1.23172 0.91972 1.03427 1.02468 1.23064 1.01400 0.91651 1.03814 1.21024 1.06898 0.92267 1.01843 1.21624 0.99557 0.99383 0.91095 1.21245 1.01990 0.87931 1.01440 1.22183 0.97687 0.95047 0.91382 1.60788 1.12827 1.04959 1.52493 1.20270 0.93862 0.92332 0.91768 0.90730 0.88908 0.92184 0.93022 0.93986 0.95007 0.94366 0.92493 0.75213 0.91473 0.91225 0.87172 0.88238 0.87867 0.87462 0.87758 0.87590 0.88840 0.90626 0.86928 0.83478 0.90172 0.90379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.74 9.13 71.98 0.66 -3.08 16 2 C 0.14 3.91 3.06 44.99 0.14 4.05 16 3 H 0.13 2.86 7.30 -2.38 -0.02 2.85 16 4 C -0.09 -3.45 4.80 30.59 0.15 -3.31 16 5 C 0.00 -0.12 3.80 29.85 0.11 -0.01 16 6 C -0.54 -29.86 9.66 25.60 0.25 -29.61 16 7 H 0.02 1.35 7.99 -2.91 -0.02 1.32 16 8 C 0.00 0.08 5.47 84.65 0.46 0.54 16 9 N -0.95 -59.06 13.96 21.45 0.30 -58.76 16 10 Si 0.95 41.15 27.47 68.60 1.88 43.03 16 11 H -0.26 -10.86 7.11 99.48 0.71 -10.15 16 12 H -0.29 -12.57 7.11 99.48 0.71 -11.86 16 13 H -0.23 -8.72 6.53 99.48 0.65 -8.07 16 14 N -0.25 -7.22 3.02 -314.50 -0.95 -8.17 16 15 N -0.27 -8.63 11.39 -48.71 -0.55 -9.19 16 16 C -0.03 -1.08 7.12 42.08 0.30 -0.78 16 17 C 0.61 18.51 7.82 86.75 0.68 19.19 16 18 O -0.56 -19.13 15.91 -3.93 -0.06 -19.20 16 19 N -0.71 -17.77 5.55 -466.10 -2.59 -20.36 16 20 C 0.15 3.17 5.95 86.38 0.51 3.68 16 21 C -0.18 -2.99 5.84 -10.79 -0.06 -3.05 16 22 C -0.17 -2.37 10.18 30.62 0.31 -2.06 16 23 C -0.16 -2.10 10.25 30.62 0.31 -1.79 16 24 C -0.21 -5.83 6.07 -20.04 -0.12 -5.96 16 25 C 0.01 0.26 6.78 41.68 0.28 0.55 16 26 C -0.09 -1.44 5.77 30.06 0.17 -1.26 16 27 C 0.07 1.00 6.53 86.48 0.56 1.57 16 28 N -0.68 -13.13 6.88 -516.23 -3.55 -16.68 16 29 C 0.15 3.63 6.23 85.35 0.53 4.16 16 30 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 31 H 0.09 2.16 6.56 -2.39 -0.02 2.15 16 32 H 0.06 1.60 8.14 -2.39 -0.02 1.59 16 33 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 34 H 0.04 1.65 8.14 -2.39 -0.02 1.64 16 35 H 0.03 1.22 7.58 -2.39 -0.02 1.21 16 36 H 0.04 1.50 5.60 -2.39 -0.01 1.49 16 37 H 0.27 15.33 8.31 -92.71 -0.77 14.56 16 38 H 0.41 9.86 8.14 -92.71 -0.75 9.10 16 39 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 40 H 0.07 1.44 7.88 -2.39 -0.02 1.42 16 41 H 0.11 1.87 8.04 -2.39 -0.02 1.85 16 42 H 0.10 1.30 8.03 -2.39 -0.02 1.28 16 43 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 44 H 0.11 1.21 8.14 -2.39 -0.02 1.19 16 45 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 46 H 0.11 1.37 7.96 -2.39 -0.02 1.35 16 47 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 48 H 0.08 1.18 8.07 -2.39 -0.02 1.16 16 49 H 0.11 1.16 8.14 -2.39 -0.02 1.14 16 50 H 0.35 6.33 8.79 -89.70 -0.79 5.54 16 51 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 52 H 0.08 2.10 7.75 -2.39 -0.02 2.09 16 Total: -1.00 -71.87 416.97 -0.94 -72.81 By element: Atomic # 1 Polarization: 34.36 SS G_CDS: -0.67 Total: 33.69 kcal Atomic # 6 Polarization: -22.42 SS G_CDS: 5.25 Total: -17.17 kcal Atomic # 7 Polarization: -105.82 SS G_CDS: -7.34 Total: -113.16 kcal Atomic # 8 Polarization: -19.13 SS G_CDS: -0.06 Total: -19.20 kcal Atomic # 14 Polarization: 41.15 SS G_CDS: 1.88 Total: 43.03 kcal Total: -71.87 -0.94 -72.81 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172498953.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.743 kcal (2) G-P(sol) polarization free energy of solvation -71.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.807 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds