Wall clock time and date at job start Wed Apr 1 2020 05:43:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42905 * 113.99778 * 2 1 4 4 C 1.52190 * 110.71851 * 300.00296 * 3 2 1 5 5 C 1.33229 * 113.67799 * 179.67025 * 4 3 2 6 6 C 1.52193 * 113.68109 * 359.97438 * 5 4 3 7 7 H 1.09002 * 110.71946 * 179.67226 * 6 5 4 8 8 C 1.53445 * 107.80408 * 301.56801 * 6 5 4 9 9 C 1.53091 * 109.48964 * 55.86561 * 8 6 5 10 10 C 1.53440 * 107.79962 * 58.43846 * 6 5 4 11 11 C 1.53442 * 110.70744 * 180.50091 * 3 2 1 12 12 H 1.09002 * 109.46758 * 57.10220 * 11 3 2 13 13 C 1.50706 * 109.46732 * 297.11652 * 11 3 2 14 14 N 1.30285 * 126.34820 * 300.02024 * 13 11 3 15 15 N 1.28526 * 110.05652 * 179.97438 * 14 13 11 16 16 C 1.31214 * 109.85988 * 0.02562 * 15 14 13 17 17 N 1.38578 * 126.47305 * 179.97438 * 16 15 14 18 18 C 1.46900 * 110.99902 * 236.07330 * 17 16 15 19 19 C 1.46896 * 111.00158 * 0.02562 * 17 16 15 20 20 H 1.08998 * 109.47399 * 300.00220 * 19 17 16 21 21 C 1.53007 * 109.46866 * 60.00108 * 19 17 16 22 22 C 1.50697 * 109.47587 * 179.97438 * 19 17 16 23 23 H 1.08008 * 119.99576 * 0.02562 * 22 19 17 24 24 C 1.37868 * 120.00743 * 180.02562 * 22 19 17 25 25 N 1.31517 * 120.00084 * 359.97438 * 24 22 19 26 26 Si 1.86797 * 120.00545 * 180.02562 * 24 22 19 27 27 H 1.48503 * 109.46930 * 89.99743 * 26 24 22 28 28 H 1.48503 * 109.47491 * 209.99713 * 26 24 22 29 29 H 1.48497 * 109.47093 * 330.00136 * 26 24 22 30 30 N 1.36449 * 107.05142 * 359.75938 * 16 15 14 31 31 C 1.46511 * 127.13646 * 180.24229 * 30 16 15 32 32 H 1.08997 * 109.47442 * 59.99964 * 1 2 3 33 33 H 1.08999 * 109.46926 * 179.97438 * 1 2 3 34 34 H 1.08997 * 109.47171 * 299.99768 * 1 2 3 35 35 H 1.07998 * 123.16313 * 359.70162 * 4 3 2 36 36 H 1.07997 * 123.16270 * 180.02562 * 5 4 3 37 37 H 1.08994 * 109.46927 * 175.87368 * 8 6 5 38 38 H 1.09004 * 109.46631 * 295.86792 * 8 6 5 39 39 H 1.09001 * 109.46561 * 239.99898 * 9 8 6 40 40 H 1.08996 * 109.46702 * 120.00604 * 9 8 6 41 41 H 1.08997 * 109.47568 * 64.14002 * 10 6 5 42 42 H 1.09004 * 109.47087 * 184.13079 * 10 6 5 43 43 H 1.08992 * 109.47260 * 60.00211 * 18 17 16 44 44 H 1.09004 * 109.47014 * 179.97438 * 18 17 16 45 45 H 1.09006 * 109.47288 * 299.99475 * 18 17 16 46 46 H 1.08999 * 109.47092 * 180.02562 * 21 19 17 47 47 H 1.08996 * 109.47205 * 299.99914 * 21 19 17 48 48 H 1.08998 * 109.47019 * 59.99880 * 21 19 17 49 49 H 0.96999 * 120.00900 * 180.02562 * 25 24 22 50 50 H 1.08998 * 109.47009 * 270.15747 * 31 30 16 51 51 H 1.08993 * 109.46731 * 30.15681 * 31 30 16 52 52 H 1.08996 * 109.46953 * 150.15710 * 31 30 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 1.5789 2.0869 -1.2327 5 6 2.0830 3.3188 -1.2888 6 6 2.9764 3.6681 -0.1072 7 1 3.3662 4.6814 -0.2047 8 6 2.1438 3.5134 1.1724 9 6 1.5645 2.0977 1.2368 10 6 4.1216 2.6477 -0.0673 11 6 3.5420 1.2175 -0.0125 12 1 3.8658 0.6424 -0.8801 13 6 4.0164 0.5376 1.2460 14 7 3.8117 0.9434 2.4670 15 7 4.3533 0.1274 3.2993 16 6 4.9380 -0.8505 2.6485 17 7 5.6254 -1.9164 3.2068 18 6 6.9948 -1.9932 2.6805 19 6 5.6291 -1.8304 4.6732 20 1 6.1119 -0.9031 4.9816 21 6 4.1887 -1.8515 5.1889 22 6 6.3834 -3.0038 5.2434 23 1 6.8171 -3.7396 4.5824 24 6 6.5199 -3.1380 6.6087 25 7 5.9923 -2.2418 7.4137 26 14 7.4556 -4.5921 7.3155 27 1 8.8903 -4.2361 7.4569 28 1 6.8981 -4.9395 8.6474 29 1 7.3222 -5.7568 6.4040 30 7 4.7370 -0.6222 1.3183 31 6 5.1996 -1.4473 0.1995 32 1 -0.3634 0.5138 -0.8899 33 1 -0.3633 -1.0277 -0.0005 34 1 -0.3633 0.5138 0.8900 35 1 0.9252 1.6811 -1.9906 36 1 1.8765 4.0055 -2.0964 37 1 2.7781 3.6862 2.0417 38 1 1.3302 4.2388 1.1663 39 1 0.4761 2.1514 1.2613 40 1 1.9240 1.5988 2.1367 41 1 4.7312 2.7502 -0.9651 42 1 4.7385 2.8281 0.8131 43 1 7.5270 -1.0719 2.9167 44 1 7.5120 -2.8380 3.1355 45 1 6.9615 -2.1268 1.5992 46 1 4.1914 -1.7872 6.2770 47 1 3.6427 -1.0030 4.7766 48 1 3.7059 -2.7787 4.8805 49 1 6.0886 -2.3359 8.3743 50 1 6.1879 -1.1119 -0.1149 51 1 5.2528 -2.4894 0.5143 52 1 4.5024 -1.3543 -0.6331 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001262903788.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:43:24 Heat of formation + Delta-G solvation = 87.328215 kcal Electronic energy + Delta-G solvation = -32885.704483 eV Core-core repulsion = 28888.363200 eV Total energy + Delta-G solvation = -3997.341282 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.55019 -40.75733 -37.09997 -36.91367 -34.64467 -32.94359 -32.00060 -30.93617 -30.19588 -29.18303 -28.44073 -27.32058 -26.68649 -25.31156 -24.23068 -23.37921 -21.96166 -21.84326 -21.63536 -20.12363 -19.37844 -17.66546 -16.85750 -16.47563 -16.40729 -16.10441 -15.59980 -15.31613 -15.14215 -14.75381 -14.46502 -14.33826 -13.93581 -13.88757 -13.57890 -13.14308 -13.01884 -12.92323 -12.62739 -12.50729 -12.35654 -12.17846 -12.13087 -11.80614 -11.62143 -11.40689 -11.10899 -10.98746 -10.89895 -10.73638 -10.66538 -10.45117 -10.32948 -10.14300 -10.01843 -9.95561 -9.66927 -9.51539 -9.39675 -9.33280 -9.16723 -8.56359 -8.40198 -7.24221 -6.01577 -4.09495 1.90417 2.35712 2.78308 3.29251 3.36287 3.39100 3.47509 3.58264 4.24583 4.35825 4.52515 4.59046 4.66812 4.75684 4.82322 4.88976 4.92087 5.06352 5.12334 5.21005 5.25149 5.26549 5.29851 5.32246 5.40302 5.46149 5.49832 5.63341 5.68432 5.70601 5.81180 5.85740 5.92255 6.00821 6.03808 6.11793 6.18612 6.25055 6.34082 6.43624 6.50040 6.51737 6.65151 7.00058 7.06817 7.20781 7.28399 7.45634 7.51359 7.77264 7.78479 8.03606 8.33020 8.50524 8.92171 9.48145 9.55262 11.04414 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.020536 B = 0.002939 C = 0.002904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1363.126975 B = 9525.684934 C = 9640.211698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.371 6.371 3 C 0.159 3.841 4 C -0.189 4.189 5 C -0.147 4.147 6 C -0.065 4.065 7 H 0.086 0.914 8 C -0.102 4.102 9 C -0.151 4.151 10 C -0.097 4.097 11 C 0.029 3.971 12 H 0.088 0.912 13 C 0.161 3.839 14 N -0.279 5.279 15 N -0.317 5.317 16 C 0.386 3.614 17 N -0.454 5.454 18 C 0.033 3.967 19 C 0.232 3.768 20 H 0.020 0.980 21 C -0.142 4.142 22 C -0.518 4.518 23 H 0.064 0.936 24 C 0.064 3.936 25 N -0.882 5.882 26 Si 0.899 3.101 27 H -0.281 1.281 28 H -0.286 1.286 29 H -0.274 1.274 30 N -0.488 5.488 31 C 0.080 3.920 32 H 0.041 0.959 33 H 0.083 0.917 34 H 0.045 0.955 35 H 0.124 0.876 36 H 0.123 0.877 37 H 0.078 0.922 38 H 0.059 0.941 39 H 0.059 0.941 40 H 0.110 0.890 41 H 0.070 0.930 42 H 0.083 0.917 43 H 0.028 0.972 44 H 0.097 0.903 45 H 0.049 0.951 46 H 0.085 0.915 47 H 0.046 0.954 48 H 0.022 0.978 49 H 0.262 0.738 50 H 0.071 0.929 51 H 0.093 0.907 52 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.604 9.374 -20.625 23.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.289 6.289 3 C 0.118 3.882 4 C -0.208 4.208 5 C -0.165 4.165 6 C -0.083 4.083 7 H 0.105 0.895 8 C -0.139 4.139 9 C -0.188 4.188 10 C -0.136 4.136 11 C 0.008 3.992 12 H 0.107 0.893 13 C -0.106 4.106 14 N -0.119 5.119 15 N -0.162 5.162 16 C 0.030 3.970 17 N -0.178 5.178 18 C -0.114 4.114 19 C 0.128 3.872 20 H 0.038 0.962 21 C -0.201 4.201 22 C -0.557 4.557 23 H 0.082 0.918 24 C -0.138 4.138 25 N -0.520 5.520 26 Si 0.727 3.273 27 H -0.207 1.207 28 H -0.211 1.211 29 H -0.199 1.199 30 N -0.185 5.185 31 C -0.063 4.063 32 H 0.059 0.941 33 H 0.101 0.899 34 H 0.064 0.936 35 H 0.142 0.858 36 H 0.141 0.859 37 H 0.097 0.903 38 H 0.078 0.922 39 H 0.078 0.922 40 H 0.128 0.872 41 H 0.089 0.911 42 H 0.101 0.899 43 H 0.046 0.954 44 H 0.116 0.884 45 H 0.068 0.932 46 H 0.104 0.896 47 H 0.065 0.935 48 H 0.041 0.959 49 H 0.072 0.928 50 H 0.090 0.910 51 H 0.111 0.889 52 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -7.184 9.597 -19.332 22.747 hybrid contribution 0.938 -1.063 -0.629 1.551 sum -6.246 8.534 -19.961 22.590 Atomic orbital electron populations 1.22736 0.81296 1.02434 1.00123 1.87938 1.19641 1.26522 1.94843 1.20715 0.91673 0.82708 0.93062 1.24387 1.01396 0.96355 0.98623 1.23937 0.98065 0.96288 0.98194 1.20763 0.94651 0.99141 0.93772 0.89535 1.21534 0.99180 0.96120 0.97106 1.22419 1.00132 0.96462 0.99825 1.21927 0.97297 0.91209 1.03143 1.19706 0.92361 0.95830 0.91347 0.89344 1.23965 1.01164 0.88277 0.97227 1.73755 1.18695 1.22568 0.96847 1.74814 1.16968 1.01286 1.23105 1.23221 1.00573 0.93026 0.80147 1.59068 1.14076 1.31593 1.13056 1.22425 0.87953 1.02741 0.98296 1.19337 0.95710 0.97132 0.75023 0.96233 1.21960 0.95985 0.98366 1.03756 1.21077 1.34333 1.08664 0.91600 0.91798 1.24892 0.95678 0.96397 0.96876 1.69930 1.44003 1.34541 1.03551 0.86491 0.79747 0.82596 0.78515 1.20710 1.21139 1.19856 1.45967 1.44033 1.21460 1.07019 1.21987 1.00091 0.96222 0.88048 0.94087 0.89855 0.93630 0.85805 0.85942 0.90309 0.92187 0.92243 0.87190 0.91085 0.89859 0.95364 0.88439 0.93189 0.89620 0.93536 0.95918 0.92770 0.91031 0.88857 0.89771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 10.35 101.05 1.05 1.37 16 2 O -0.37 -5.18 10.21 -35.23 -0.36 -5.54 16 3 C 0.16 1.98 0.64 -90.55 -0.06 1.92 16 4 C -0.19 -1.86 8.55 -35.32 -0.30 -2.17 16 5 C -0.15 -1.27 9.82 -35.31 -0.35 -1.62 16 6 C -0.06 -0.62 3.57 -90.57 -0.32 -0.94 16 7 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 8 C -0.10 -1.15 5.68 -26.45 -0.15 -1.30 16 9 C -0.15 -1.99 4.49 -26.43 -0.12 -2.11 16 10 C -0.10 -1.05 5.35 -25.76 -0.14 -1.19 16 11 C 0.03 0.37 2.46 -90.80 -0.22 0.14 16 12 H 0.09 1.01 6.94 -51.93 -0.36 0.65 16 13 C 0.16 2.70 5.88 -154.02 -0.91 1.79 16 14 N -0.28 -5.59 9.42 32.99 0.31 -5.28 16 15 N -0.32 -7.36 9.00 30.31 0.27 -7.09 16 16 C 0.39 8.26 6.75 -318.89 -2.15 6.10 16 17 N -0.45 -10.14 4.69 -176.09 -0.83 -10.97 16 18 C 0.03 0.62 9.09 60.06 0.55 1.17 16 19 C 0.23 6.09 1.73 -68.87 -0.12 5.97 16 20 H 0.02 0.58 8.11 -51.93 -0.42 0.16 16 21 C -0.14 -3.82 8.77 37.16 0.33 -3.50 16 22 C -0.52 -14.07 7.88 -34.45 -0.27 -14.34 16 23 H 0.06 1.67 6.41 -52.48 -0.34 1.34 16 24 C 0.06 1.77 5.30 -17.82 -0.09 1.68 16 25 N -0.88 -25.48 11.32 55.43 0.63 -24.85 16 26 Si 0.90 21.07 29.54 -169.99 -5.02 16.05 16 27 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 28 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 29 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 30 N -0.49 -8.40 3.21 -121.46 -0.39 -8.79 16 31 C 0.08 0.98 9.20 59.85 0.55 1.53 16 32 H 0.04 0.36 6.74 -51.93 -0.35 0.01 16 33 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.05 0.50 6.45 -51.93 -0.33 0.16 16 35 H 0.12 1.07 7.26 -52.49 -0.38 0.69 16 36 H 0.12 0.81 8.06 -52.49 -0.42 0.39 16 37 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 38 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.06 0.73 6.52 -51.93 -0.34 0.39 16 40 H 0.11 1.85 5.40 -51.93 -0.28 1.57 16 41 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 42 H 0.08 1.05 7.58 -51.93 -0.39 0.66 16 43 H 0.03 0.54 8.14 -51.93 -0.42 0.11 16 44 H 0.10 1.87 6.10 -51.93 -0.32 1.55 16 45 H 0.05 0.74 5.44 -51.93 -0.28 0.46 16 46 H 0.09 2.47 6.07 -51.93 -0.32 2.15 16 47 H 0.05 1.23 5.43 -51.93 -0.28 0.95 16 48 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 49 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 50 H 0.07 0.72 7.84 -51.93 -0.41 0.31 16 51 H 0.09 1.17 7.60 -51.93 -0.39 0.77 16 52 H 0.08 0.85 7.23 -51.93 -0.38 0.48 16 LS Contribution 384.69 15.07 5.80 5.80 Total: -1.00 -32.61 384.69 -10.41 -43.02 By element: Atomic # 1 Polarization: 11.21 SS G_CDS: -8.09 Total: 3.12 kcal Atomic # 6 Polarization: -2.74 SS G_CDS: -2.74 Total: -5.48 kcal Atomic # 7 Polarization: -56.96 SS G_CDS: 0.00 Total: -56.97 kcal Atomic # 8 Polarization: -5.18 SS G_CDS: -0.36 Total: -5.54 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -32.61 -10.41 -43.02 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001262903788.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.345 kcal (2) G-P(sol) polarization free energy of solvation -32.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.017 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds