Wall clock time and date at job start Wed Apr 1 2020 05:43:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42905 * 113.99778 * 2 1 4 4 C 1.52190 * 110.71851 * 300.00296 * 3 2 1 5 5 C 1.33229 * 113.67799 * 179.67025 * 4 3 2 6 6 C 1.52193 * 113.68109 * 359.97438 * 5 4 3 7 7 H 1.09002 * 110.71946 * 179.67226 * 6 5 4 8 8 C 1.53445 * 107.80408 * 301.56801 * 6 5 4 9 9 C 1.53091 * 109.48964 * 55.86561 * 8 6 5 10 10 C 1.53440 * 107.79962 * 58.43846 * 6 5 4 11 11 C 1.53442 * 110.70744 * 180.50091 * 3 2 1 12 12 H 1.09002 * 109.46758 * 57.10220 * 11 3 2 13 13 C 1.50706 * 109.46732 * 297.11652 * 11 3 2 14 14 N 1.30285 * 126.34820 * 300.02024 * 13 11 3 15 15 N 1.28526 * 110.05652 * 179.97438 * 14 13 11 16 16 C 1.31214 * 109.85988 * 0.02562 * 15 14 13 17 17 N 1.38578 * 126.47305 * 179.97438 * 16 15 14 18 18 C 1.46900 * 110.99902 * 236.07330 * 17 16 15 19 19 C 1.46896 * 111.00158 * 0.02562 * 17 16 15 20 20 H 1.08998 * 109.47399 * 300.00220 * 19 17 16 21 21 C 1.53007 * 109.46866 * 60.00108 * 19 17 16 22 22 C 1.50697 * 109.47587 * 179.97438 * 19 17 16 23 23 H 1.08008 * 119.99576 * 0.02562 * 22 19 17 24 24 C 1.37868 * 120.00743 * 180.02562 * 22 19 17 25 25 N 1.31517 * 120.00084 * 359.97438 * 24 22 19 26 26 Si 1.86797 * 120.00545 * 180.02562 * 24 22 19 27 27 H 1.48503 * 109.46930 * 89.99743 * 26 24 22 28 28 H 1.48503 * 109.47491 * 209.99713 * 26 24 22 29 29 H 1.48497 * 109.47093 * 330.00136 * 26 24 22 30 30 N 1.36449 * 107.05142 * 359.75938 * 16 15 14 31 31 C 1.46511 * 127.13646 * 180.24229 * 30 16 15 32 32 H 1.08997 * 109.47442 * 59.99964 * 1 2 3 33 33 H 1.08999 * 109.46926 * 179.97438 * 1 2 3 34 34 H 1.08997 * 109.47171 * 299.99768 * 1 2 3 35 35 H 1.07998 * 123.16313 * 359.70162 * 4 3 2 36 36 H 1.07997 * 123.16270 * 180.02562 * 5 4 3 37 37 H 1.08994 * 109.46927 * 175.87368 * 8 6 5 38 38 H 1.09004 * 109.46631 * 295.86792 * 8 6 5 39 39 H 1.09001 * 109.46561 * 239.99898 * 9 8 6 40 40 H 1.08996 * 109.46702 * 120.00604 * 9 8 6 41 41 H 1.08997 * 109.47568 * 64.14002 * 10 6 5 42 42 H 1.09004 * 109.47087 * 184.13079 * 10 6 5 43 43 H 1.08992 * 109.47260 * 60.00211 * 18 17 16 44 44 H 1.09004 * 109.47014 * 179.97438 * 18 17 16 45 45 H 1.09006 * 109.47288 * 299.99475 * 18 17 16 46 46 H 1.08999 * 109.47092 * 180.02562 * 21 19 17 47 47 H 1.08996 * 109.47205 * 299.99914 * 21 19 17 48 48 H 1.08998 * 109.47019 * 59.99880 * 21 19 17 49 49 H 0.96999 * 120.00900 * 180.02562 * 25 24 22 50 50 H 1.08998 * 109.47009 * 270.15747 * 31 30 16 51 51 H 1.08993 * 109.46731 * 30.15681 * 31 30 16 52 52 H 1.08996 * 109.46953 * 150.15710 * 31 30 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 1.5789 2.0869 -1.2327 5 6 2.0830 3.3188 -1.2888 6 6 2.9764 3.6681 -0.1072 7 1 3.3662 4.6814 -0.2047 8 6 2.1438 3.5134 1.1724 9 6 1.5645 2.0977 1.2368 10 6 4.1216 2.6477 -0.0673 11 6 3.5420 1.2175 -0.0125 12 1 3.8658 0.6424 -0.8801 13 6 4.0164 0.5376 1.2460 14 7 3.8117 0.9434 2.4670 15 7 4.3533 0.1274 3.2993 16 6 4.9380 -0.8505 2.6485 17 7 5.6254 -1.9164 3.2068 18 6 6.9948 -1.9932 2.6805 19 6 5.6291 -1.8304 4.6732 20 1 6.1119 -0.9031 4.9816 21 6 4.1887 -1.8515 5.1889 22 6 6.3834 -3.0038 5.2434 23 1 6.8171 -3.7396 4.5824 24 6 6.5199 -3.1380 6.6087 25 7 5.9923 -2.2418 7.4137 26 14 7.4556 -4.5921 7.3155 27 1 8.8903 -4.2361 7.4569 28 1 6.8981 -4.9395 8.6474 29 1 7.3222 -5.7568 6.4040 30 7 4.7370 -0.6222 1.3183 31 6 5.1996 -1.4473 0.1995 32 1 -0.3634 0.5138 -0.8899 33 1 -0.3633 -1.0277 -0.0005 34 1 -0.3633 0.5138 0.8900 35 1 0.9252 1.6811 -1.9906 36 1 1.8765 4.0055 -2.0964 37 1 2.7781 3.6862 2.0417 38 1 1.3302 4.2388 1.1663 39 1 0.4761 2.1514 1.2613 40 1 1.9240 1.5988 2.1367 41 1 4.7312 2.7502 -0.9651 42 1 4.7385 2.8281 0.8131 43 1 7.5270 -1.0719 2.9167 44 1 7.5120 -2.8380 3.1355 45 1 6.9615 -2.1268 1.5992 46 1 4.1914 -1.7872 6.2770 47 1 3.6427 -1.0030 4.7766 48 1 3.7059 -2.7787 4.8805 49 1 6.0886 -2.3359 8.3743 50 1 6.1879 -1.1119 -0.1149 51 1 5.2528 -2.4894 0.5143 52 1 4.5024 -1.3543 -0.6331 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001262903788.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:43:23 Heat of formation + Delta-G solvation = 68.724657 kcal Electronic energy + Delta-G solvation = -32886.511193 eV Core-core repulsion = 28888.363200 eV Total energy + Delta-G solvation = -3998.147993 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -43.98155 -41.70791 -38.84739 -37.86101 -36.04553 -34.86236 -33.18174 -31.80729 -31.18243 -31.07349 -29.86753 -28.49276 -27.61664 -27.22938 -25.96663 -24.52035 -23.42209 -22.87857 -22.67732 -21.42518 -21.00759 -18.55965 -18.53220 -17.91414 -17.61702 -17.31682 -16.91420 -16.76179 -16.46922 -16.20182 -15.60830 -15.56299 -15.37499 -14.95240 -14.77158 -14.59279 -14.16001 -14.11388 -13.94975 -13.66999 -13.51841 -13.36103 -13.16367 -13.07503 -12.95506 -12.77582 -12.74157 -12.54283 -12.34836 -12.23242 -12.16289 -12.04970 -11.96440 -11.59970 -11.52535 -11.37110 -11.09304 -10.91166 -10.77558 -10.54843 -10.41924 -10.32847 -9.97829 -8.93388 -8.13086 -6.29238 0.91651 1.21146 1.41172 1.45421 1.46976 1.56657 1.96417 2.41222 2.67571 2.99925 3.17678 3.27859 3.61266 3.72198 3.77641 3.89719 3.95267 4.06052 4.12858 4.17723 4.20126 4.31508 4.35909 4.41214 4.46181 4.47395 4.51556 4.51887 4.58316 4.62740 4.76856 4.82244 4.83086 4.90316 4.97632 5.02109 5.06586 5.09144 5.14927 5.17661 5.24184 5.28560 5.35487 5.39942 5.45877 5.57481 5.64711 5.67230 5.81403 5.96882 6.05627 6.16754 6.33648 6.61435 6.80754 7.39652 7.96951 8.93667 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.020536 B = 0.002939 C = 0.002904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1363.126975 B = 9525.684934 C = 9640.211698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.398 6.398 3 C 0.156 3.844 4 C -0.196 4.196 5 C -0.125 4.125 6 C -0.064 4.064 7 H 0.111 0.889 8 C -0.101 4.101 9 C -0.153 4.153 10 C -0.095 4.095 11 C 0.024 3.976 12 H 0.111 0.889 13 C 0.185 3.815 14 N -0.310 5.310 15 N -0.368 5.368 16 C 0.363 3.637 17 N -0.457 5.457 18 C 0.035 3.965 19 C 0.246 3.754 20 H -0.026 1.026 21 C -0.126 4.126 22 C -0.530 4.530 23 H 0.074 0.926 24 C 0.011 3.989 25 N -0.919 5.919 26 Si 0.971 3.029 27 H -0.272 1.272 28 H -0.286 1.286 29 H -0.262 1.262 30 N -0.484 5.484 31 C 0.068 3.932 32 H 0.066 0.934 33 H 0.089 0.911 34 H 0.035 0.965 35 H 0.142 0.858 36 H 0.156 0.844 37 H 0.053 0.947 38 H 0.075 0.925 39 H 0.063 0.937 40 H 0.066 0.934 41 H 0.102 0.898 42 H 0.057 0.943 43 H 0.015 0.985 44 H 0.092 0.908 45 H 0.093 0.907 46 H 0.060 0.940 47 H 0.043 0.957 48 H 0.016 0.984 49 H 0.263 0.737 50 H 0.101 0.899 51 H 0.092 0.908 52 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.312 9.430 -24.806 27.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.318 6.318 3 C 0.116 3.884 4 C -0.215 4.215 5 C -0.143 4.143 6 C -0.082 4.082 7 H 0.129 0.871 8 C -0.139 4.139 9 C -0.191 4.191 10 C -0.134 4.134 11 C 0.003 3.997 12 H 0.129 0.871 13 C -0.084 4.084 14 N -0.148 5.148 15 N -0.212 5.212 16 C 0.006 3.994 17 N -0.181 5.181 18 C -0.112 4.112 19 C 0.140 3.860 20 H -0.008 1.008 21 C -0.184 4.184 22 C -0.568 4.568 23 H 0.092 0.908 24 C -0.188 4.188 25 N -0.557 5.557 26 Si 0.796 3.204 27 H -0.198 1.198 28 H -0.212 1.212 29 H -0.186 1.186 30 N -0.179 5.179 31 C -0.073 4.073 32 H 0.085 0.915 33 H 0.107 0.893 34 H 0.053 0.947 35 H 0.160 0.840 36 H 0.173 0.827 37 H 0.072 0.928 38 H 0.094 0.906 39 H 0.081 0.919 40 H 0.085 0.915 41 H 0.120 0.880 42 H 0.076 0.924 43 H 0.034 0.966 44 H 0.110 0.890 45 H 0.112 0.888 46 H 0.079 0.921 47 H 0.062 0.938 48 H 0.035 0.965 49 H 0.072 0.928 50 H 0.119 0.881 51 H 0.110 0.890 52 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -6.890 9.654 -23.561 26.378 hybrid contribution 0.772 -0.975 0.603 1.382 sum -6.118 8.679 -22.958 25.295 Atomic orbital electron populations 1.22861 0.80020 1.03148 1.00843 1.87883 1.21213 1.27631 1.95048 1.20746 0.91202 0.82484 0.94003 1.24288 1.02789 0.96526 0.97850 1.24134 0.96246 0.96044 0.97849 1.20813 0.94167 1.00062 0.93182 0.87126 1.21499 0.99576 0.95233 0.97569 1.22357 1.00329 0.97523 0.98858 1.21936 0.97803 0.90196 1.03417 1.20107 0.93016 0.96920 0.89627 0.87072 1.24879 0.98437 0.87304 0.97791 1.73730 1.19987 1.22989 0.98105 1.74657 1.18170 1.02809 1.25546 1.23076 1.01261 0.93068 0.81988 1.58983 1.15955 1.32417 1.10738 1.22512 0.86041 1.01819 1.00790 1.18901 0.94276 0.94911 0.77901 1.00825 1.21753 0.96916 0.97783 1.01984 1.21388 1.34388 1.08887 0.92146 0.90772 1.25829 0.96505 0.99208 0.97262 1.70095 1.45311 1.36562 1.03780 0.85355 0.78413 0.79108 0.77530 1.19769 1.21192 1.18636 1.46211 1.43449 1.21751 1.06509 1.22415 1.02374 0.95532 0.87014 0.91535 0.89257 0.94660 0.84045 0.82693 0.92778 0.90625 0.91886 0.91528 0.87985 0.92415 0.96582 0.88957 0.88835 0.92128 0.93847 0.96456 0.92786 0.88086 0.88964 0.87067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.56 10.35 113.37 1.17 1.73 16 2 O -0.40 -10.67 10.21 -148.98 -1.52 -12.20 16 3 C 0.16 3.63 0.64 -10.75 -0.01 3.62 16 4 C -0.20 -3.11 8.55 25.03 0.21 -2.90 16 5 C -0.13 -1.58 9.82 25.03 0.25 -1.33 16 6 C -0.06 -1.03 3.57 -10.76 -0.04 -1.07 16 7 H 0.11 1.31 8.14 -2.39 -0.02 1.29 16 8 C -0.10 -2.22 5.68 30.77 0.17 -2.05 16 9 C -0.15 -4.08 4.49 30.79 0.14 -3.95 16 10 C -0.10 -1.83 5.35 31.22 0.17 -1.66 16 11 C 0.02 0.57 2.46 -10.91 -0.03 0.54 16 12 H 0.11 2.11 6.94 -2.39 -0.02 2.09 16 13 C 0.18 6.21 5.88 137.64 0.81 7.02 16 14 N -0.31 -13.12 9.42 -49.54 -0.47 -13.58 16 15 N -0.37 -18.19 9.00 -58.01 -0.52 -18.71 16 16 C 0.36 16.09 6.75 260.12 1.76 17.85 16 17 N -0.46 -21.01 4.69 -711.01 -3.33 -24.34 16 18 C 0.04 1.31 9.09 127.69 1.16 2.47 16 19 C 0.25 13.60 1.73 44.17 0.08 13.68 16 20 H -0.03 -1.64 8.11 -2.39 -0.02 -1.66 16 21 C -0.13 -7.20 8.77 71.98 0.63 -6.57 16 22 C -0.53 -29.50 7.88 25.60 0.20 -29.30 16 23 H 0.07 3.89 6.41 -2.91 -0.02 3.87 16 24 C 0.01 0.64 5.30 84.65 0.45 1.09 16 25 N -0.92 -55.26 11.32 21.44 0.24 -55.01 16 26 Si 0.97 43.67 29.54 68.60 2.03 45.70 16 27 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 28 H -0.29 -12.80 7.11 99.48 0.71 -12.10 16 29 H -0.26 -11.22 7.11 99.48 0.71 -10.52 16 30 N -0.48 -16.41 3.21 -538.18 -1.73 -18.14 16 31 C 0.07 1.47 9.20 127.77 1.18 2.65 16 32 H 0.07 1.00 6.74 -2.39 -0.02 0.98 16 33 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 34 H 0.03 0.77 6.45 -2.39 -0.02 0.76 16 35 H 0.14 1.79 7.26 -2.91 -0.02 1.77 16 36 H 0.16 1.07 8.06 -2.91 -0.02 1.05 16 37 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 38 H 0.08 1.39 8.14 -2.38 -0.02 1.37 16 39 H 0.06 1.57 6.52 -2.39 -0.02 1.55 16 40 H 0.07 2.40 5.40 -2.39 -0.01 2.39 16 41 H 0.10 1.35 8.14 -2.39 -0.02 1.33 16 42 H 0.06 1.43 7.58 -2.39 -0.02 1.41 16 43 H 0.02 0.61 8.14 -2.39 -0.02 0.59 16 44 H 0.09 3.52 6.10 -2.38 -0.01 3.50 16 45 H 0.09 2.61 5.44 -2.38 -0.01 2.60 16 46 H 0.06 3.73 6.07 -2.39 -0.01 3.71 16 47 H 0.04 2.48 5.43 -2.39 -0.01 2.46 16 48 H 0.02 0.93 8.14 -2.39 -0.02 0.92 16 49 H 0.26 14.96 8.31 -92.71 -0.77 14.19 16 50 H 0.10 1.63 7.84 -2.39 -0.02 1.61 16 51 H 0.09 2.07 7.60 -2.39 -0.02 2.06 16 52 H 0.11 1.84 7.23 -2.39 -0.02 1.82 16 Total: -1.00 -77.34 384.69 3.93 -73.41 By element: Atomic # 1 Polarization: 20.12 SS G_CDS: 0.93 Total: 21.05 kcal Atomic # 6 Polarization: -6.47 SS G_CDS: 8.30 Total: 1.83 kcal Atomic # 7 Polarization: -123.99 SS G_CDS: -5.80 Total: -129.79 kcal Atomic # 8 Polarization: -10.67 SS G_CDS: -1.52 Total: -12.20 kcal Atomic # 14 Polarization: 43.67 SS G_CDS: 2.03 Total: 45.70 kcal Total: -77.34 3.93 -73.41 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001262903788.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.134 kcal (2) G-P(sol) polarization free energy of solvation -77.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.409 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds