Wall clock time and date at job start Wed Apr 1 2020 04:50:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 H 1.08996 * 109.46428 * 347.10152 * 3 2 1 5 5 C 1.53033 * 109.45819 * 227.13205 * 3 2 1 6 6 C 1.53123 * 109.27945 * 180.80429 * 5 3 2 7 7 C 1.53120 * 109.15769 * 57.65459 * 6 5 3 8 8 C 1.53035 * 109.27908 * 302.34571 * 7 6 5 9 9 N 1.46846 * 109.52201 * 59.18188 * 8 7 6 10 10 C 1.38581 * 111.00206 * 174.16063 * 9 8 7 11 11 N 1.31215 * 126.47471 * 70.11569 * 10 9 8 12 12 N 1.28528 * 109.86322 * 179.69461 * 11 10 9 13 13 C 1.30299 * 110.05294 * 0.45482 * 12 11 10 14 14 C 1.50697 * 126.34797 * 179.81900 * 13 12 11 15 15 H 1.08996 * 109.46618 * 179.68916 * 14 13 12 16 16 C 1.53001 * 109.47210 * 299.68840 * 14 13 12 17 17 C 1.52997 * 109.46825 * 59.68774 * 14 13 12 18 18 C 1.50703 * 109.46804 * 174.99641 * 17 14 13 19 19 H 1.08002 * 120.00048 * 0.02562 * 18 17 14 20 20 C 1.37882 * 119.99952 * 179.97438 * 18 17 14 21 21 N 1.31510 * 119.99896 * 0.02562 * 20 18 17 22 22 Si 1.86797 * 119.99982 * 180.02562 * 20 18 17 23 23 H 1.48507 * 109.47185 * 270.00587 * 22 20 18 24 24 H 1.48498 * 109.47149 * 150.00369 * 22 20 18 25 25 H 1.48503 * 109.47196 * 30.00476 * 22 20 18 26 26 N 1.36454 * 126.47403 * 250.07659 * 10 9 8 27 27 C 1.46502 * 127.13556 * 0.05783 * 26 10 9 28 28 C 1.53000 * 109.46646 * 264.79085 * 27 26 10 29 29 O 1.42903 * 109.47054 * 179.97438 * 28 27 26 30 30 C 1.42903 * 114.00060 * 179.97438 * 29 28 27 31 31 H 4.18726 * 15.04267 * 0.02562 * 4 2 1 32 32 H 1.08999 * 109.50470 * 300.74747 * 5 3 2 33 33 H 1.09003 * 109.50672 * 60.82556 * 5 3 2 34 34 H 1.08997 * 109.52298 * 177.55583 * 6 5 3 35 35 H 1.08997 * 109.52279 * 297.69031 * 6 5 3 36 36 H 1.09003 * 109.50384 * 62.28705 * 7 6 5 37 37 H 1.09002 * 109.50274 * 182.36801 * 7 6 5 38 38 H 1.08997 * 109.46548 * 299.16354 * 8 7 6 39 39 H 1.09003 * 109.46536 * 179.18892 * 8 7 6 40 40 H 1.08996 * 109.46967 * 59.99754 * 16 14 13 41 41 H 1.08999 * 109.46975 * 180.02562 * 16 14 13 42 42 H 1.09000 * 109.46984 * 299.99815 * 16 14 13 43 43 H 1.09001 * 109.47317 * 55.00450 * 17 14 13 44 44 H 1.09000 * 109.47688 * 294.99552 * 17 14 13 45 45 H 0.97000 * 120.00093 * 359.97438 * 21 20 18 46 46 H 1.08997 * 109.47081 * 24.79002 * 27 26 10 47 47 H 1.08993 * 109.47122 * 144.79535 * 27 26 10 48 48 H 1.08997 * 109.47313 * 299.99774 * 28 27 26 49 49 H 1.09003 * 109.47292 * 59.99922 * 28 27 26 50 50 H 1.09000 * 109.47381 * 300.00690 * 30 29 28 51 51 H 1.08999 * 109.46734 * 60.00311 * 30 29 28 52 52 H 1.09003 * 109.46976 * 180.02562 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 1 3.0097 -1.0009 0.2294 5 6 3.1554 0.9825 1.0576 6 6 4.6864 0.9949 1.0403 7 6 5.1701 1.3745 -0.3620 8 6 4.6023 0.3812 -1.3785 9 7 3.1351 0.4076 -1.3235 10 6 2.5865 -0.3834 -2.3204 11 7 2.6162 -1.6937 -2.3814 12 7 2.0051 -2.0957 -3.4383 13 6 1.5614 -1.0736 -4.1138 14 6 0.7971 -1.1244 -5.4115 15 1 0.5570 -0.1106 -5.7317 16 6 1.6521 -1.8079 -6.4805 17 6 -0.4969 -1.9157 -5.2106 18 6 -1.3190 -1.8629 -6.4725 19 1 -0.9548 -1.3196 -7.3320 20 6 -2.5357 -2.5090 -6.5302 21 7 -2.9790 -3.1709 -5.4838 22 14 -3.5545 -2.4441 -8.0946 23 1 -4.4612 -1.2689 -8.0465 24 1 -4.3598 -3.6861 -8.2127 25 1 -2.6524 -2.3255 -9.2682 26 7 1.9126 0.0534 -3.4236 27 6 1.6255 1.4419 -3.7925 28 6 0.2284 1.8222 -3.2984 29 8 -0.0515 3.1768 -3.6577 30 6 -1.3396 3.6343 -3.2411 31 1 -1.0500 -0.0012 -0.0002 32 1 2.7809 1.9820 0.8366 33 1 2.8045 0.6718 2.0417 34 1 5.0530 1.7248 1.7620 35 1 5.0616 0.0051 1.3005 36 1 4.8273 2.3802 -0.6054 37 1 6.2593 1.3440 -0.3920 38 1 4.9567 -0.6222 -1.1427 39 1 4.9331 0.6572 -2.3798 40 1 1.8922 -2.8217 -6.1603 41 1 1.0994 -1.8442 -7.4193 42 1 2.5739 -1.2441 -6.6236 43 1 -1.0650 -1.4805 -4.3884 44 1 -0.2561 -2.9528 -4.9770 45 1 -2.4498 -3.2049 -4.6716 46 1 2.3644 2.0996 -3.3348 47 1 1.6683 1.5460 -4.8766 48 1 -0.5105 1.1645 -3.7561 49 1 0.1855 1.7180 -2.2142 50 1 -2.1108 3.0143 -3.6982 51 1 -1.4155 3.5672 -2.1558 52 1 -1.4752 4.6703 -3.5518 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001263219985.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:50:36 Heat of formation + Delta-G solvation = 79.459895 kcal Electronic energy + Delta-G solvation = -32164.824456 eV Core-core repulsion = 28167.141978 eV Total energy + Delta-G solvation = -3997.682478 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.77546 -39.50122 -38.07355 -35.62084 -34.95165 -33.91433 -33.52345 -32.23245 -30.42099 -29.77597 -28.54003 -26.63933 -26.42691 -25.03944 -24.12647 -23.76899 -23.35027 -22.19289 -20.97891 -20.24211 -19.38434 -18.29981 -17.37874 -16.86697 -16.52524 -16.24109 -16.06699 -15.65356 -15.30002 -14.95177 -14.77382 -14.58849 -14.17473 -13.94455 -13.76292 -13.73164 -13.48324 -13.34946 -13.00202 -12.48901 -12.29872 -11.91656 -11.80872 -11.68078 -11.51492 -11.40428 -11.28036 -11.22124 -11.13848 -10.98785 -10.94118 -10.79469 -10.60960 -10.40864 -10.25981 -10.16702 -10.09846 -9.89933 -9.85769 -9.78393 -8.90423 -8.68712 -8.43976 -8.33418 -6.36320 -4.06616 1.91267 2.17279 2.73171 2.79745 3.18701 3.42094 3.46254 3.53265 3.61731 3.91623 4.12366 4.46090 4.52357 4.55548 4.63942 4.71577 4.82873 4.86677 4.89963 5.03573 5.17389 5.21920 5.24978 5.26839 5.31213 5.33440 5.34725 5.41430 5.49020 5.53268 5.56405 5.57469 5.63589 5.71332 5.71598 5.78878 5.88527 5.93825 6.00327 6.05424 6.15564 6.26972 6.54163 6.60661 6.69783 6.77030 6.94259 6.96086 7.30582 7.34925 7.51066 7.55654 8.14436 8.44249 8.85643 9.07671 9.65682 11.03888 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.012622 B = 0.003357 C = 0.003100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2217.886558 B = 8339.186418 C = 9029.107194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.185 4.185 3 C 0.212 3.788 4 H 0.080 0.920 5 C -0.106 4.106 6 C -0.123 4.123 7 C -0.117 4.117 8 C 0.065 3.935 9 N -0.456 5.456 10 C 0.328 3.672 11 N -0.309 5.309 12 N -0.284 5.284 13 C 0.218 3.782 14 C 0.003 3.997 15 H 0.074 0.926 16 C -0.125 4.125 17 C 0.028 3.972 18 C -0.600 4.600 19 H 0.053 0.947 20 C 0.017 3.983 21 N -0.911 5.911 22 Si 1.070 2.930 23 H -0.289 1.289 24 H -0.284 1.284 25 H -0.288 1.288 26 N -0.464 5.464 27 C 0.120 3.880 28 C 0.049 3.951 29 O -0.388 6.388 30 C 0.034 3.966 31 H 0.217 0.783 32 H 0.076 0.924 33 H 0.077 0.923 34 H 0.071 0.929 35 H 0.066 0.934 36 H 0.074 0.926 37 H 0.075 0.925 38 H 0.054 0.946 39 H 0.079 0.921 40 H 0.060 0.940 41 H 0.076 0.924 42 H 0.033 0.967 43 H 0.002 0.998 44 H 0.023 0.977 45 H 0.270 0.730 46 H 0.105 0.895 47 H 0.100 0.900 48 H 0.064 0.936 49 H 0.058 0.942 50 H 0.047 0.953 51 H 0.040 0.960 52 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.296 14.673 11.368 22.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.186 4.186 3 C 0.105 3.895 4 H 0.098 0.902 5 C -0.144 4.144 6 C -0.160 4.160 7 C -0.154 4.154 8 C -0.061 4.061 9 N -0.182 5.182 10 C -0.028 4.028 11 N -0.152 5.152 12 N -0.123 5.123 13 C -0.049 4.049 14 C -0.018 4.018 15 H 0.092 0.908 16 C -0.183 4.183 17 C -0.010 4.010 18 C -0.638 4.638 19 H 0.071 0.929 20 C -0.187 4.187 21 N -0.546 5.546 22 Si 0.898 3.102 23 H -0.216 1.216 24 H -0.210 1.210 25 H -0.214 1.214 26 N -0.158 5.158 27 C -0.004 4.004 28 C -0.029 4.029 29 O -0.306 6.306 30 C -0.063 4.063 31 H 0.234 0.766 32 H 0.095 0.905 33 H 0.095 0.905 34 H 0.090 0.910 35 H 0.084 0.916 36 H 0.093 0.907 37 H 0.094 0.906 38 H 0.073 0.927 39 H 0.097 0.903 40 H 0.079 0.921 41 H 0.095 0.905 42 H 0.052 0.948 43 H 0.020 0.980 44 H 0.041 0.959 45 H 0.081 0.919 46 H 0.123 0.877 47 H 0.119 0.881 48 H 0.082 0.918 49 H 0.076 0.924 50 H 0.066 0.934 51 H 0.059 0.941 52 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 12.196 13.347 10.899 21.111 hybrid contribution 0.817 1.041 0.717 1.505 sum 13.013 14.389 11.616 22.612 Atomic orbital electron populations 1.24922 0.95880 1.00648 0.98298 1.22520 0.93761 1.00528 1.01753 1.18537 0.84698 0.99043 0.87196 0.90227 1.21635 0.95765 0.99743 0.97284 1.21623 0.94971 1.02227 0.97184 1.21639 1.00212 0.99592 0.94000 1.22197 0.83474 0.99768 1.00710 1.58574 1.08458 1.50422 1.00730 1.22015 1.01092 0.89332 0.90382 1.74527 1.18852 1.06711 1.15130 1.74063 1.12749 1.24117 1.01407 1.25692 0.99893 0.80811 0.98537 1.19874 0.95405 1.01511 0.84986 0.90770 1.21667 0.97335 1.00340 0.98975 1.19202 0.89267 0.95055 0.97462 1.21973 1.06025 1.36867 0.98966 0.92897 1.25803 0.96404 0.93314 1.03213 1.70727 1.40635 1.39468 1.03809 0.83533 0.75625 0.76595 0.74417 1.21580 1.20998 1.21368 1.46197 1.42334 1.08139 1.19106 1.21432 0.97433 0.79069 1.02492 1.22759 0.96236 0.84051 0.99840 1.87743 1.35263 1.27302 1.80309 1.22764 0.84419 1.00204 0.98865 0.76601 0.90486 0.90462 0.90992 0.91550 0.90721 0.90617 0.92741 0.90257 0.92111 0.90472 0.94782 0.97968 0.95880 0.91932 0.87672 0.88132 0.91783 0.92423 0.93399 0.94102 0.89362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.53 18.85 29.55 0.56 -1.97 16 2 C -0.19 -2.68 11.67 -37.12 -0.43 -3.12 16 3 C 0.21 2.64 2.16 -70.51 -0.15 2.49 16 4 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 5 C -0.11 -0.94 5.33 -26.65 -0.14 -1.08 16 6 C -0.12 -0.85 6.00 -26.61 -0.16 -1.01 16 7 C -0.12 -0.85 6.09 -26.65 -0.16 -1.02 16 8 C 0.07 0.69 5.40 -3.84 -0.02 0.66 16 9 N -0.46 -5.95 4.48 -170.19 -0.76 -6.71 16 10 C 0.33 5.49 5.38 -318.88 -1.72 3.77 16 11 N -0.31 -6.16 12.09 30.31 0.37 -5.79 16 12 N -0.28 -6.25 12.18 32.99 0.40 -5.85 16 13 C 0.22 4.36 6.58 -154.01 -1.01 3.35 16 14 C 0.00 0.07 2.71 -91.77 -0.25 -0.18 16 15 H 0.07 1.46 7.07 -51.93 -0.37 1.09 16 16 C -0.13 -2.41 8.98 37.16 0.33 -2.08 16 17 C 0.03 0.72 3.74 -27.88 -0.10 0.61 16 18 C -0.60 -16.43 8.41 -34.44 -0.29 -16.72 16 19 H 0.05 1.40 7.06 -52.49 -0.37 1.03 16 20 C 0.02 0.48 5.46 -17.82 -0.10 0.39 16 21 N -0.91 -27.87 13.65 55.43 0.76 -27.12 16 22 Si 1.07 24.95 29.90 -169.99 -5.08 19.87 16 23 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 24 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 25 H -0.29 -6.33 7.11 56.52 0.40 -5.93 16 26 N -0.46 -7.86 2.81 -114.09 -0.32 -8.18 16 27 C 0.12 1.68 6.16 -4.04 -0.02 1.65 16 28 C 0.05 0.71 6.26 37.16 0.23 0.94 16 29 O -0.39 -5.32 10.70 -35.23 -0.38 -5.69 16 30 C 0.03 0.37 11.01 101.05 1.11 1.49 16 31 H 0.22 2.50 7.80 -54.09 -0.42 2.07 16 32 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 35 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.08 0.44 8.14 -51.93 -0.42 0.01 16 38 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.08 0.84 8.10 -51.93 -0.42 0.42 16 40 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 41 H 0.08 1.51 6.95 -51.93 -0.36 1.15 16 42 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 43 H 0.00 0.06 8.01 -51.93 -0.42 -0.36 16 44 H 0.02 0.65 8.01 -51.93 -0.42 0.23 16 45 H 0.27 8.39 7.22 -40.82 -0.29 8.09 16 46 H 0.10 1.30 8.11 -51.93 -0.42 0.88 16 47 H 0.10 1.34 7.47 -51.93 -0.39 0.95 16 48 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 49 H 0.06 0.85 7.74 -51.93 -0.40 0.45 16 50 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 51 H 0.04 0.41 8.14 -51.93 -0.42 -0.02 16 52 H 0.09 0.78 8.14 -51.93 -0.42 0.35 16 LS Contribution 424.85 15.07 6.40 6.40 Total: -1.00 -33.69 424.85 -9.94 -43.62 By element: Atomic # 1 Polarization: 10.23 SS G_CDS: -8.99 Total: 1.24 kcal Atomic # 6 Polarization: -9.48 SS G_CDS: -2.33 Total: -11.80 kcal Atomic # 7 Polarization: -54.09 SS G_CDS: 0.44 Total: -53.64 kcal Atomic # 8 Polarization: -5.32 SS G_CDS: -0.38 Total: -5.69 kcal Atomic # 14 Polarization: 24.95 SS G_CDS: -5.08 Total: 19.87 kcal Total LS contribution 6.40 Total: 6.40 kcal Total: -33.69 -9.94 -43.62 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001263219985.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.084 kcal (2) G-P(sol) polarization free energy of solvation -33.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.624 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds