Wall clock time and date at job start Wed Apr 1 2020 05:12:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08992 * 109.47432 * 2 1 4 4 N 1.46501 * 109.47005 * 119.99947 * 2 1 3 5 5 C 1.36932 * 119.99988 * 275.00080 * 4 2 1 6 6 H 1.08000 * 120.00267 * 359.97438 * 5 4 2 7 7 C 1.38810 * 119.99729 * 180.02562 * 5 4 2 8 8 N 1.31620 * 120.00383 * 359.97438 * 7 5 4 9 9 Si 1.86810 * 119.99959 * 179.97438 * 7 5 4 10 10 H 1.48496 * 109.47020 * 89.99361 * 9 7 5 11 11 H 1.48493 * 109.47251 * 209.99916 * 9 7 5 12 12 H 1.48501 * 109.46599 * 329.99911 * 9 7 5 13 13 C 1.53004 * 109.46972 * 239.99877 * 2 1 3 14 14 H 1.08996 * 109.70442 * 58.00066 * 13 2 1 15 15 C 1.53196 * 109.58754 * 297.64429 * 13 2 1 16 16 C 1.53039 * 109.33821 * 185.59601 * 15 13 2 17 17 C 1.53042 * 109.54161 * 61.31592 * 16 15 13 18 18 C 1.53195 * 109.33928 * 298.68586 * 17 16 15 19 19 N 1.46924 * 108.77573 * 54.61521 * 18 17 16 20 20 C 1.34771 * 120.62887 * 126.41673 * 19 18 17 21 21 O 1.21632 * 120.00172 * 174.54620 * 20 19 18 22 22 C 1.47327 * 120.00324 * 354.54372 * 20 19 18 23 23 C 1.36573 * 126.21499 * 186.37844 * 22 20 19 24 24 N 1.34867 * 106.78499 * 179.81482 * 23 22 20 25 25 C 1.36311 * 107.86379 * 0.48078 * 24 23 22 26 26 N 1.29793 * 108.92231 * 359.66134 * 25 24 23 27 27 C 1.51096 * 123.90348 * 179.61054 * 25 24 23 28 28 C 1.53393 * 108.19586 * 344.06854 * 27 25 24 29 29 C 1.53137 * 109.25469 * 48.93638 * 28 27 25 30 30 C 1.46578 * 127.50113 * 180.25188 * 24 23 22 31 31 H 1.09003 * 109.47411 * 295.31824 * 1 2 3 32 32 H 1.09006 * 109.47067 * 55.32199 * 1 2 3 33 33 H 1.09004 * 109.47060 * 175.31850 * 1 2 3 34 34 H 0.97008 * 119.99805 * 94.99861 * 4 2 1 35 35 H 0.96999 * 119.99629 * 180.02562 * 8 7 5 36 36 H 1.09002 * 109.49229 * 305.53003 * 15 13 2 37 37 H 1.08999 * 109.49883 * 65.59234 * 15 13 2 38 38 H 1.08999 * 109.43000 * 301.30782 * 16 15 13 39 39 H 1.09003 * 109.48412 * 181.35145 * 16 15 13 40 40 H 1.08997 * 109.49905 * 178.71308 * 17 16 15 41 41 H 1.09005 * 109.49599 * 58.65064 * 17 16 15 42 42 H 1.08996 * 109.58551 * 174.40845 * 18 17 16 43 43 H 1.08999 * 109.57972 * 294.82838 * 18 17 16 44 44 H 1.07995 * 126.60232 * 359.94114 * 23 22 20 45 45 H 1.09005 * 109.72200 * 103.73346 * 27 25 24 46 46 H 1.08996 * 109.72159 * 224.38735 * 27 25 24 47 47 H 1.08999 * 109.50356 * 289.00324 * 28 27 25 48 48 H 1.08998 * 109.54331 * 168.89562 * 28 27 25 49 49 H 1.09003 * 109.45826 * 170.18786 * 29 28 27 50 50 H 1.09005 * 109.44986 * 50.21794 * 29 28 27 51 51 H 1.09007 * 109.57988 * 282.89340 * 30 24 23 52 52 H 1.09001 * 109.58495 * 43.30607 * 30 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1490 -0.0075 2.3757 6 1 1.8926 1.0405 2.4242 7 6 2.6122 -0.6618 3.5090 8 7 2.9252 -1.9388 3.4499 9 14 2.7913 0.2703 5.1180 10 1 1.5239 0.1792 5.8864 11 1 3.8961 -0.3228 5.9133 12 1 3.0961 1.6955 4.8331 13 6 2.0399 -0.7213 -1.2493 14 1 1.6498 -0.2315 -2.1414 15 6 1.5797 -2.1823 -1.2226 16 6 2.2072 -2.9328 -2.3995 17 6 3.7319 -2.9035 -2.2710 18 6 4.2165 -1.4507 -2.3095 19 7 3.5087 -0.6885 -1.2719 20 6 4.1936 0.0276 -0.3584 21 8 3.5974 0.7328 0.4331 22 6 5.6647 -0.0438 -0.3186 23 6 6.4750 0.5260 0.6217 24 7 7.7427 0.2130 0.2844 25 6 7.7003 -0.5311 -0.8569 26 7 6.4618 -0.6836 -1.2141 27 6 8.9256 -1.0692 -1.5583 28 6 10.1520 -0.3193 -1.0228 29 6 10.1123 -0.3145 0.5080 30 6 8.9722 0.5897 0.9880 31 1 -0.3634 0.4395 0.9290 32 1 -0.3633 0.5847 -0.8452 33 1 -0.3633 -1.0243 -0.0839 34 1 2.2490 -1.6319 1.1526 35 1 3.2485 -2.3960 4.2419 36 1 1.8938 -2.6455 -0.2872 37 1 0.4934 -2.2230 -1.3020 38 1 1.9122 -2.4543 -3.3334 39 1 1.8623 -3.9668 -2.3968 40 1 4.1774 -3.4577 -3.0971 41 1 4.0262 -3.3603 -1.3260 42 1 5.2892 -1.4182 -2.1191 43 1 4.0038 -1.0205 -3.2881 44 1 6.1608 1.1122 1.4725 45 1 9.0283 -2.1349 -1.3538 46 1 8.8355 -0.9072 -2.6323 47 1 10.1403 0.7068 -1.3905 48 1 11.0605 -0.8171 -1.3619 49 1 11.0602 0.0600 0.8946 50 1 9.9480 -1.3294 0.8701 51 1 9.2140 1.6299 0.7695 52 1 8.8323 0.4628 2.0616 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001265999293.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:12:48 Heat of formation + Delta-G solvation = 78.617423 kcal Electronic energy + Delta-G solvation = -33136.407623 eV Core-core repulsion = 29138.688613 eV Total energy + Delta-G solvation = -3997.719011 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 2.36 seconds Orbital eigenvalues (eV) -42.22664 -39.64452 -36.87238 -36.29117 -34.88235 -33.45123 -32.06500 -31.99085 -29.88167 -29.33169 -28.51542 -27.82440 -25.34766 -24.21909 -23.71210 -23.04143 -22.30491 -22.00966 -20.25019 -19.72632 -18.95518 -18.26222 -16.94298 -16.74315 -16.07370 -15.81954 -15.22740 -14.74707 -14.46401 -14.34929 -14.07305 -14.02058 -13.93707 -13.80465 -13.68820 -13.44961 -13.25820 -12.88325 -12.67186 -12.39487 -12.15867 -11.96147 -11.83252 -11.53382 -11.45779 -11.38641 -11.31224 -11.17050 -10.91927 -10.83518 -10.64305 -10.45599 -10.32840 -10.23909 -9.96651 -9.68374 -9.54276 -9.24182 -8.97273 -8.63593 -8.08562 -8.00725 -7.62862 -6.45749 -5.40314 -2.61365 2.07831 2.72515 2.74814 3.59474 3.64736 3.67085 3.79297 4.12258 4.30835 4.35329 4.40399 4.44239 4.88780 4.89653 5.01898 5.12028 5.15511 5.24745 5.35663 5.37905 5.39057 5.44001 5.53590 5.53926 5.64818 5.72326 5.82512 5.85177 5.89511 5.93734 5.96761 6.01866 6.10430 6.24969 6.30759 6.34032 6.39258 6.48124 6.51768 6.56459 6.66268 6.70063 6.80521 6.98751 7.11644 7.18449 7.24586 7.44221 7.71561 8.07996 8.09136 8.41667 8.78629 9.33061 9.89391 10.49247 10.85808 11.84267 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.009016 B = 0.005046 C = 0.003584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3104.722844 B = 5547.977261 C = 7810.245646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.167 3.833 3 H 0.085 0.915 4 N -0.705 5.705 5 C -0.168 4.168 6 H 0.065 0.935 7 C -0.033 4.033 8 N -0.948 5.948 9 Si 0.894 3.106 10 H -0.297 1.297 11 H -0.299 1.299 12 H -0.286 1.286 13 C 0.146 3.854 14 H 0.058 0.942 15 C -0.131 4.131 16 C -0.117 4.117 17 C -0.130 4.130 18 C 0.067 3.933 19 N -0.598 5.598 20 C 0.590 3.410 21 O -0.468 6.468 22 C -0.038 4.038 23 C 0.036 3.964 24 N -0.455 5.455 25 C 0.197 3.803 26 N -0.458 5.458 27 C -0.032 4.032 28 C -0.125 4.125 29 C -0.135 4.135 30 C 0.102 3.898 31 H 0.054 0.946 32 H 0.031 0.969 33 H 0.043 0.957 34 H 0.378 0.622 35 H 0.245 0.755 36 H 0.076 0.924 37 H 0.067 0.933 38 H 0.054 0.946 39 H 0.054 0.946 40 H 0.060 0.940 41 H 0.063 0.937 42 H 0.154 0.846 43 H 0.043 0.957 44 H 0.187 0.813 45 H 0.089 0.911 46 H 0.094 0.906 47 H 0.070 0.930 48 H 0.081 0.919 49 H 0.088 0.912 50 H 0.077 0.923 51 H 0.085 0.915 52 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.829 1.526 -13.841 20.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.057 3.943 3 H 0.102 0.898 4 N -0.346 5.346 5 C -0.301 4.301 6 H 0.083 0.917 7 C -0.225 4.225 8 N -0.601 5.601 9 Si 0.728 3.272 10 H -0.226 1.226 11 H -0.226 1.226 12 H -0.213 1.213 13 C 0.042 3.958 14 H 0.076 0.924 15 C -0.169 4.169 16 C -0.155 4.155 17 C -0.168 4.168 18 C -0.056 4.056 19 N -0.332 5.332 20 C 0.375 3.625 21 O -0.339 6.339 22 C -0.167 4.167 23 C -0.101 4.101 24 N -0.138 5.138 25 C -0.065 4.065 26 N -0.178 5.178 27 C -0.071 4.071 28 C -0.163 4.163 29 C -0.173 4.173 30 C -0.020 4.020 31 H 0.073 0.927 32 H 0.050 0.950 33 H 0.062 0.938 34 H 0.213 0.787 35 H 0.055 0.945 36 H 0.095 0.905 37 H 0.086 0.914 38 H 0.073 0.927 39 H 0.073 0.927 40 H 0.079 0.921 41 H 0.082 0.918 42 H 0.170 0.830 43 H 0.061 0.939 44 H 0.204 0.796 45 H 0.107 0.893 46 H 0.113 0.887 47 H 0.088 0.912 48 H 0.099 0.901 49 H 0.107 0.893 50 H 0.096 0.904 51 H 0.103 0.897 52 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 14.352 1.714 -13.837 20.009 hybrid contribution 0.312 0.309 1.761 1.815 sum 14.664 2.023 -12.076 19.104 Atomic orbital electron populations 1.22617 1.00393 1.00136 0.99998 1.20726 0.90040 0.98131 0.85396 0.89754 1.42409 1.77311 1.09712 1.05185 1.19110 1.31466 0.93126 0.86373 0.91743 1.24536 1.04592 0.95987 0.97414 1.69657 1.54020 1.08571 1.27821 0.86315 0.76915 0.78777 0.85186 1.22551 1.22607 1.21263 1.21508 0.79443 0.95693 0.99109 0.92382 1.21969 0.99874 0.95865 0.99203 1.21528 0.95923 0.99745 0.98313 1.21857 0.95611 0.97656 1.01703 1.22838 1.03266 0.89709 0.89814 1.47557 1.05572 1.49287 1.30815 1.16831 0.83599 0.81519 0.80507 1.90967 1.66549 1.38894 1.37509 1.20975 0.94751 1.04799 0.96142 1.22453 0.82057 1.03578 1.02028 1.45169 1.06680 1.40401 1.21545 1.23542 0.95067 0.99264 0.88595 1.69706 0.99553 1.21623 1.26959 1.20196 0.87257 0.99964 0.99671 1.21668 0.98165 1.01532 0.94898 1.21895 0.97846 1.00850 0.96707 1.22033 0.82340 0.99928 0.97744 0.92701 0.94967 0.93837 0.78723 0.94484 0.90516 0.91399 0.92740 0.92677 0.92138 0.91788 0.82973 0.93854 0.79595 0.89293 0.88739 0.91155 0.90064 0.89338 0.90429 0.89672 0.88877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.40 9.31 37.16 0.35 -3.05 16 2 C 0.17 3.70 1.89 -67.93 -0.13 3.57 16 3 H 0.08 2.05 5.91 -52.11 -0.31 1.74 16 4 N -0.70 -18.64 3.45 -53.43 -0.18 -18.82 16 5 C -0.17 -4.95 8.06 -15.06 -0.12 -5.07 16 6 H 0.06 1.92 7.83 -52.49 -0.41 1.51 16 7 C -0.03 -0.99 5.50 -17.43 -0.10 -1.09 16 8 N -0.95 -30.21 13.06 55.49 0.72 -29.48 16 9 Si 0.89 23.94 29.55 -169.99 -5.02 18.92 16 10 H -0.30 -7.97 7.11 56.52 0.40 -7.56 16 11 H -0.30 -8.06 7.11 56.52 0.40 -7.66 16 12 H -0.29 -7.51 7.11 56.52 0.40 -7.11 16 13 C 0.15 2.78 2.75 -67.59 -0.19 2.60 16 14 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 15 C -0.13 -2.32 4.81 -26.61 -0.13 -2.45 16 16 C -0.12 -1.74 5.89 -26.69 -0.16 -1.90 16 17 C -0.13 -1.99 6.08 -26.61 -0.16 -2.15 16 18 C 0.07 1.11 6.33 -3.71 -0.02 1.08 16 19 N -0.60 -11.63 2.96 -166.51 -0.49 -12.12 16 20 C 0.59 12.91 7.11 -12.57 -0.09 12.82 16 21 O -0.47 -11.67 9.98 5.25 0.05 -11.62 16 22 C -0.04 -0.75 6.74 -82.97 -0.56 -1.31 16 23 C 0.04 0.63 11.33 -16.82 -0.19 0.44 16 24 N -0.45 -6.13 3.11 -113.43 -0.35 -6.48 16 25 C 0.20 2.68 7.64 -154.64 -1.18 1.50 16 26 N -0.46 -7.65 7.61 -7.00 -0.05 -7.70 16 27 C -0.03 -0.28 6.33 -27.49 -0.17 -0.45 16 28 C -0.12 -0.76 5.95 -26.46 -0.16 -0.92 16 29 C -0.14 -0.87 5.93 -26.54 -0.16 -1.03 16 30 C 0.10 0.90 6.96 -3.88 -0.03 0.87 16 31 H 0.05 1.18 8.14 -51.93 -0.42 0.75 16 32 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.04 0.84 6.40 -51.93 -0.33 0.50 16 34 H 0.38 10.75 5.86 -40.82 -0.24 10.51 16 35 H 0.25 7.67 8.31 -40.82 -0.34 7.34 16 36 H 0.08 1.63 6.23 -51.93 -0.32 1.31 16 37 H 0.07 1.13 6.70 -51.93 -0.35 0.78 16 38 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 39 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 40 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 41 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 42 H 0.15 2.59 3.60 -81.69 -0.29 2.29 16 43 H 0.04 0.66 8.14 -51.93 -0.42 0.23 16 44 H 0.19 3.24 8.06 -52.49 -0.42 2.82 16 45 H 0.09 0.72 8.14 -51.93 -0.42 0.29 16 46 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 47 H 0.07 0.44 8.12 -51.93 -0.42 0.01 16 48 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 49 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 50 H 0.08 0.57 8.11 -51.93 -0.42 0.15 16 51 H 0.09 0.62 8.14 -51.93 -0.42 0.19 16 52 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 LS Contribution 388.77 15.07 5.86 5.86 Total: -1.00 -35.68 388.77 -11.24 -46.92 By element: Atomic # 1 Polarization: 19.66 SS G_CDS: -8.57 Total: 11.08 kcal Atomic # 6 Polarization: 6.65 SS G_CDS: -3.19 Total: 3.46 kcal Atomic # 7 Polarization: -74.26 SS G_CDS: -0.36 Total: -74.62 kcal Atomic # 8 Polarization: -11.67 SS G_CDS: 0.05 Total: -11.62 kcal Atomic # 14 Polarization: 23.94 SS G_CDS: -5.02 Total: 18.92 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -35.68 -11.24 -46.92 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265999293.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.538 kcal (2) G-P(sol) polarization free energy of solvation -35.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.920 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.36 seconds