Wall clock time and date at job start Wed Apr 1 2020 05:12:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08992 * 109.47432 * 2 1 4 4 N 1.46501 * 109.47005 * 119.99947 * 2 1 3 5 5 C 1.36932 * 119.99988 * 275.00080 * 4 2 1 6 6 H 1.08000 * 120.00267 * 359.97438 * 5 4 2 7 7 C 1.38810 * 119.99729 * 180.02562 * 5 4 2 8 8 N 1.31620 * 120.00383 * 359.97438 * 7 5 4 9 9 Si 1.86810 * 119.99959 * 179.97438 * 7 5 4 10 10 H 1.48496 * 109.47020 * 89.99361 * 9 7 5 11 11 H 1.48493 * 109.47251 * 209.99916 * 9 7 5 12 12 H 1.48501 * 109.46599 * 329.99911 * 9 7 5 13 13 C 1.53004 * 109.46972 * 239.99877 * 2 1 3 14 14 H 1.08996 * 109.70442 * 58.00066 * 13 2 1 15 15 C 1.53196 * 109.58754 * 297.64429 * 13 2 1 16 16 C 1.53039 * 109.33821 * 185.59601 * 15 13 2 17 17 C 1.53042 * 109.54161 * 61.31592 * 16 15 13 18 18 C 1.53195 * 109.33928 * 298.68586 * 17 16 15 19 19 N 1.46924 * 108.77573 * 54.61521 * 18 17 16 20 20 C 1.34771 * 120.62887 * 126.41673 * 19 18 17 21 21 O 1.21632 * 120.00172 * 174.54620 * 20 19 18 22 22 C 1.47327 * 120.00324 * 354.54372 * 20 19 18 23 23 C 1.36573 * 126.21499 * 186.37844 * 22 20 19 24 24 N 1.34867 * 106.78499 * 179.81482 * 23 22 20 25 25 C 1.36311 * 107.86379 * 0.48078 * 24 23 22 26 26 N 1.29793 * 108.92231 * 359.66134 * 25 24 23 27 27 C 1.51096 * 123.90348 * 179.61054 * 25 24 23 28 28 C 1.53393 * 108.19586 * 344.06854 * 27 25 24 29 29 C 1.53137 * 109.25469 * 48.93638 * 28 27 25 30 30 C 1.46578 * 127.50113 * 180.25188 * 24 23 22 31 31 H 1.09003 * 109.47411 * 295.31824 * 1 2 3 32 32 H 1.09006 * 109.47067 * 55.32199 * 1 2 3 33 33 H 1.09004 * 109.47060 * 175.31850 * 1 2 3 34 34 H 0.97008 * 119.99805 * 94.99861 * 4 2 1 35 35 H 0.96999 * 119.99629 * 180.02562 * 8 7 5 36 36 H 1.09002 * 109.49229 * 305.53003 * 15 13 2 37 37 H 1.08999 * 109.49883 * 65.59234 * 15 13 2 38 38 H 1.08999 * 109.43000 * 301.30782 * 16 15 13 39 39 H 1.09003 * 109.48412 * 181.35145 * 16 15 13 40 40 H 1.08997 * 109.49905 * 178.71308 * 17 16 15 41 41 H 1.09005 * 109.49599 * 58.65064 * 17 16 15 42 42 H 1.08996 * 109.58551 * 174.40845 * 18 17 16 43 43 H 1.08999 * 109.57972 * 294.82838 * 18 17 16 44 44 H 1.07995 * 126.60232 * 359.94114 * 23 22 20 45 45 H 1.09005 * 109.72200 * 103.73346 * 27 25 24 46 46 H 1.08996 * 109.72159 * 224.38735 * 27 25 24 47 47 H 1.08999 * 109.50356 * 289.00324 * 28 27 25 48 48 H 1.08998 * 109.54331 * 168.89562 * 28 27 25 49 49 H 1.09003 * 109.45826 * 170.18786 * 29 28 27 50 50 H 1.09005 * 109.44986 * 50.21794 * 29 28 27 51 51 H 1.09007 * 109.57988 * 282.89340 * 30 24 23 52 52 H 1.09001 * 109.58495 * 43.30607 * 30 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1490 -0.0075 2.3757 6 1 1.8926 1.0405 2.4242 7 6 2.6122 -0.6618 3.5090 8 7 2.9252 -1.9388 3.4499 9 14 2.7913 0.2703 5.1180 10 1 1.5239 0.1792 5.8864 11 1 3.8961 -0.3228 5.9133 12 1 3.0961 1.6955 4.8331 13 6 2.0399 -0.7213 -1.2493 14 1 1.6498 -0.2315 -2.1414 15 6 1.5797 -2.1823 -1.2226 16 6 2.2072 -2.9328 -2.3995 17 6 3.7319 -2.9035 -2.2710 18 6 4.2165 -1.4507 -2.3095 19 7 3.5087 -0.6885 -1.2719 20 6 4.1936 0.0276 -0.3584 21 8 3.5974 0.7328 0.4331 22 6 5.6647 -0.0438 -0.3186 23 6 6.4750 0.5260 0.6217 24 7 7.7427 0.2130 0.2844 25 6 7.7003 -0.5311 -0.8569 26 7 6.4618 -0.6836 -1.2141 27 6 8.9256 -1.0692 -1.5583 28 6 10.1520 -0.3193 -1.0228 29 6 10.1123 -0.3145 0.5080 30 6 8.9722 0.5897 0.9880 31 1 -0.3634 0.4395 0.9290 32 1 -0.3633 0.5847 -0.8452 33 1 -0.3633 -1.0243 -0.0839 34 1 2.2490 -1.6319 1.1526 35 1 3.2485 -2.3960 4.2419 36 1 1.8938 -2.6455 -0.2872 37 1 0.4934 -2.2230 -1.3020 38 1 1.9122 -2.4543 -3.3334 39 1 1.8623 -3.9668 -2.3968 40 1 4.1774 -3.4577 -3.0971 41 1 4.0262 -3.3603 -1.3260 42 1 5.2892 -1.4182 -2.1191 43 1 4.0038 -1.0205 -3.2881 44 1 6.1608 1.1122 1.4725 45 1 9.0283 -2.1349 -1.3538 46 1 8.8355 -0.9072 -2.6323 47 1 10.1403 0.7068 -1.3905 48 1 11.0605 -0.8171 -1.3619 49 1 11.0602 0.0600 0.8946 50 1 9.9480 -1.3294 0.8701 51 1 9.2140 1.6299 0.7695 52 1 8.8323 0.4628 2.0616 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001265999293.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:12:45 Heat of formation + Delta-G solvation = 57.016514 kcal Electronic energy + Delta-G solvation = -33137.344309 eV Core-core repulsion = 29138.688613 eV Total energy + Delta-G solvation = -3998.655696 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -43.38470 -41.19246 -38.13218 -37.45182 -36.61549 -34.48507 -34.01599 -33.45723 -31.27816 -30.76600 -29.64000 -29.50980 -26.65370 -25.75158 -25.22321 -24.54893 -23.42404 -23.13916 -21.65318 -21.21561 -19.92917 -19.71075 -19.02524 -18.02025 -17.20855 -17.01909 -16.78400 -16.30340 -15.98198 -15.66225 -15.51793 -15.20380 -15.05896 -15.03571 -14.82936 -14.82029 -14.51491 -14.33253 -14.02279 -13.96243 -13.79347 -13.45339 -13.18730 -12.99542 -12.79952 -12.69765 -12.61135 -12.40898 -12.23667 -12.11484 -12.01488 -11.95644 -11.79142 -11.68197 -11.63057 -11.43943 -11.27428 -10.82136 -10.63150 -10.28992 -9.68873 -9.47361 -9.16368 -8.59792 -7.74086 -4.93415 0.74094 1.41335 1.43899 1.49952 1.52422 1.71375 2.34885 2.67117 2.85711 3.20379 3.58389 3.59272 3.67448 3.80232 3.86062 4.01716 4.05470 4.11735 4.14582 4.24914 4.32657 4.37949 4.42680 4.44598 4.50475 4.51777 4.60028 4.70029 4.83625 4.87537 4.91647 4.93684 4.95465 4.97625 5.05826 5.08998 5.12908 5.14091 5.18790 5.19767 5.28647 5.32508 5.32634 5.46109 5.58457 5.62466 5.69063 5.76517 6.05983 6.32083 6.48254 6.77876 6.96584 7.52971 7.72845 8.32876 8.58071 9.51164 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.009016 B = 0.005046 C = 0.003584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3104.722844 B = 5547.977261 C = 7810.245646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.163 3.837 3 H 0.060 0.940 4 N -0.706 5.706 5 C -0.155 4.155 6 H 0.054 0.946 7 C -0.095 4.095 8 N -0.982 5.982 9 Si 0.955 3.045 10 H -0.294 1.294 11 H -0.301 1.301 12 H -0.280 1.280 13 C 0.146 3.854 14 H 0.086 0.914 15 C -0.124 4.124 16 C -0.110 4.110 17 C -0.124 4.124 18 C 0.062 3.938 19 N -0.598 5.598 20 C 0.577 3.423 21 O -0.518 6.518 22 C -0.074 4.074 23 C 0.021 3.979 24 N -0.449 5.449 25 C 0.208 3.792 26 N -0.476 5.476 27 C -0.033 4.033 28 C -0.118 4.118 29 C -0.130 4.130 30 C 0.089 3.911 31 H 0.031 0.969 32 H 0.067 0.933 33 H 0.049 0.951 34 H 0.366 0.634 35 H 0.238 0.762 36 H 0.033 0.967 37 H 0.082 0.918 38 H 0.081 0.919 39 H 0.070 0.930 40 H 0.094 0.906 41 H 0.029 0.971 42 H 0.152 0.848 43 H 0.064 0.936 44 H 0.173 0.827 45 H 0.099 0.901 46 H 0.109 0.891 47 H 0.073 0.927 48 H 0.112 0.888 49 H 0.120 0.880 50 H 0.068 0.932 51 H 0.105 0.895 52 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.782 1.293 -16.352 23.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.055 3.945 3 H 0.078 0.922 4 N -0.346 5.346 5 C -0.288 4.288 6 H 0.072 0.928 7 C -0.284 4.284 8 N -0.638 5.638 9 Si 0.788 3.212 10 H -0.222 1.222 11 H -0.228 1.228 12 H -0.206 1.206 13 C 0.043 3.957 14 H 0.103 0.897 15 C -0.162 4.162 16 C -0.148 4.148 17 C -0.162 4.162 18 C -0.060 4.060 19 N -0.332 5.332 20 C 0.364 3.636 21 O -0.393 6.393 22 C -0.201 4.201 23 C -0.119 4.119 24 N -0.131 5.131 25 C -0.055 4.055 26 N -0.196 5.196 27 C -0.072 4.072 28 C -0.156 4.156 29 C -0.168 4.168 30 C -0.032 4.032 31 H 0.050 0.950 32 H 0.086 0.914 33 H 0.068 0.932 34 H 0.199 0.801 35 H 0.047 0.953 36 H 0.052 0.948 37 H 0.100 0.900 38 H 0.099 0.901 39 H 0.088 0.912 40 H 0.112 0.888 41 H 0.048 0.952 42 H 0.168 0.832 43 H 0.083 0.917 44 H 0.191 0.809 45 H 0.118 0.882 46 H 0.128 0.872 47 H 0.092 0.908 48 H 0.130 0.870 49 H 0.138 0.862 50 H 0.087 0.913 51 H 0.123 0.877 52 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 16.307 1.497 -16.403 23.178 hybrid contribution -0.212 0.437 2.433 2.481 sum 16.095 1.934 -13.969 21.400 Atomic orbital electron populations 1.22437 0.98264 1.00985 1.00328 1.20797 0.91335 0.96933 0.85456 0.92215 1.42466 1.77296 1.09015 1.05808 1.19248 1.29496 0.92565 0.87529 0.92821 1.25174 1.05835 0.96899 1.00470 1.69825 1.55967 1.09952 1.28082 0.85334 0.76609 0.77785 0.81481 1.22191 1.22789 1.20625 1.21526 0.79550 0.96456 0.98194 0.89667 1.21887 1.00856 0.94851 0.98624 1.21507 0.95065 1.00429 0.97774 1.21816 0.96357 0.96837 1.01229 1.23037 1.03170 0.90181 0.89634 1.47715 1.05854 1.48778 1.30827 1.17329 0.84888 0.81061 0.80283 1.90918 1.67825 1.41075 1.39501 1.20835 0.94132 1.07069 0.98102 1.22326 0.83984 1.03917 1.01671 1.45425 1.06585 1.39486 1.21560 1.24605 0.95705 0.97198 0.87994 1.69621 1.00604 1.22361 1.27047 1.20527 0.85892 1.00656 1.00105 1.21693 0.97882 1.01730 0.94263 1.21949 0.97826 0.99788 0.97194 1.22498 0.81238 1.01883 0.97541 0.95006 0.91416 0.93180 0.80120 0.95278 0.94827 0.89997 0.90078 0.91164 0.88801 0.95162 0.83221 0.91734 0.80929 0.88249 0.87242 0.90787 0.87000 0.86169 0.91316 0.87690 0.89029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -6.34 9.31 71.98 0.67 -5.67 16 2 C 0.16 7.45 1.89 44.99 0.08 7.53 16 3 H 0.06 3.06 5.91 -5.20 -0.03 3.03 16 4 N -0.71 -39.25 3.45 -322.95 -1.11 -40.36 16 5 C -0.16 -9.55 8.06 84.03 0.68 -8.87 16 6 H 0.05 3.36 7.83 -2.91 -0.02 3.34 16 7 C -0.09 -5.97 5.50 84.86 0.47 -5.51 16 8 N -0.98 -65.43 13.06 21.65 0.28 -65.14 16 9 Si 0.96 51.30 29.55 68.60 2.03 53.33 16 10 H -0.29 -15.48 7.11 99.48 0.71 -14.78 16 11 H -0.30 -16.09 7.11 99.48 0.71 -15.39 16 12 H -0.28 -14.58 7.11 99.48 0.71 -13.87 16 13 C 0.15 5.54 2.75 44.98 0.12 5.67 16 14 H 0.09 2.79 8.14 -2.39 -0.02 2.77 16 15 C -0.12 -4.32 4.81 30.67 0.15 -4.18 16 16 C -0.11 -3.01 5.89 30.62 0.18 -2.83 16 17 C -0.12 -3.63 6.08 30.67 0.19 -3.44 16 18 C 0.06 1.99 6.33 86.36 0.55 2.53 16 19 N -0.60 -23.75 2.96 -798.96 -2.37 -26.12 16 20 C 0.58 26.69 7.11 86.64 0.62 27.31 16 21 O -0.52 -27.63 9.98 -4.13 -0.04 -27.67 16 22 C -0.07 -3.01 6.74 40.52 0.27 -2.74 16 23 C 0.02 0.76 11.33 83.84 0.95 1.71 16 24 N -0.45 -12.10 3.11 -512.77 -1.60 -13.70 16 25 C 0.21 5.50 7.64 138.05 1.05 6.56 16 26 N -0.48 -16.07 7.61 -176.08 -1.34 -17.41 16 27 C -0.03 -0.48 6.33 30.11 0.19 -0.29 16 28 C -0.12 -0.99 5.95 30.77 0.18 -0.80 16 29 C -0.13 -1.27 5.93 30.72 0.18 -1.09 16 30 C 0.09 1.45 6.96 86.44 0.60 2.05 16 31 H 0.03 1.37 8.14 -2.39 -0.02 1.35 16 32 H 0.07 2.19 8.14 -2.38 -0.02 2.17 16 33 H 0.05 1.90 6.40 -2.38 -0.02 1.88 16 34 H 0.37 22.01 5.86 -92.70 -0.54 21.47 16 35 H 0.24 15.55 8.31 -92.71 -0.77 14.78 16 36 H 0.03 1.47 6.23 -2.39 -0.01 1.46 16 37 H 0.08 2.59 6.70 -2.39 -0.02 2.58 16 38 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 39 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 40 H 0.09 2.13 8.14 -2.39 -0.02 2.11 16 41 H 0.03 1.08 8.14 -2.38 -0.02 1.06 16 42 H 0.15 5.05 3.60 -61.14 -0.22 4.83 16 43 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 44 H 0.17 6.66 8.06 -2.91 -0.02 6.64 16 45 H 0.10 1.31 8.14 -2.38 -0.02 1.29 16 46 H 0.11 1.32 8.14 -2.39 -0.02 1.30 16 47 H 0.07 0.62 8.12 -2.39 -0.02 0.60 16 48 H 0.11 0.36 8.14 -2.39 -0.02 0.34 16 49 H 0.12 0.49 8.14 -2.39 -0.02 0.48 16 50 H 0.07 0.83 8.11 -2.38 -0.02 0.82 16 51 H 0.11 1.32 8.14 -2.38 -0.02 1.30 16 52 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 Total: -1.00 -83.91 388.77 3.14 -80.77 By element: Atomic # 1 Polarization: 38.21 SS G_CDS: 0.15 Total: 38.37 kcal Atomic # 6 Polarization: 10.80 SS G_CDS: 7.14 Total: 17.93 kcal Atomic # 7 Polarization: -156.59 SS G_CDS: -6.14 Total: -162.73 kcal Atomic # 8 Polarization: -27.63 SS G_CDS: -0.04 Total: -27.67 kcal Atomic # 14 Polarization: 51.30 SS G_CDS: 2.03 Total: 53.33 kcal Total: -83.91 3.14 -80.77 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265999293.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.786 kcal (2) G-P(sol) polarization free energy of solvation -83.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.769 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds