Wall clock time and date at job start Wed Apr 1 2020 05:12:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.46771 * 2 1 4 4 N 1.46492 * 109.47056 * 120.00249 * 2 1 3 5 5 C 1.36936 * 120.00028 * 285.23911 * 4 2 1 6 6 H 1.08004 * 120.00014 * 0.02562 * 5 4 2 7 7 C 1.38815 * 120.00156 * 180.02562 * 5 4 2 8 8 N 1.31620 * 120.00060 * 0.02562 * 7 5 4 9 9 Si 1.86806 * 119.99916 * 180.02562 * 7 5 4 10 10 H 1.48503 * 109.47001 * 60.00513 * 9 7 5 11 11 H 1.48499 * 109.46830 * 179.97438 * 9 7 5 12 12 H 1.48498 * 109.47382 * 300.00280 * 9 7 5 13 13 C 1.53006 * 109.46847 * 240.00020 * 2 1 3 14 14 H 1.08999 * 109.70259 * 287.95067 * 13 2 1 15 15 C 1.53620 * 109.66542 * 48.54765 * 13 2 1 16 16 C 1.53043 * 109.24387 * 174.54749 * 15 13 2 17 17 C 1.53038 * 109.53525 * 298.50856 * 16 15 13 18 18 C 1.53196 * 109.31365 * 61.36491 * 17 16 15 19 19 N 1.46929 * 109.58115 * 167.59497 * 13 2 1 20 20 C 1.34774 * 120.63060 * 6.62950 * 19 13 2 21 21 O 1.21618 * 120.00246 * 3.44507 * 20 19 13 22 22 C 1.47330 * 119.99519 * 183.44523 * 20 19 13 23 23 C 1.36574 * 126.20575 * 173.76698 * 22 20 19 24 24 N 1.34868 * 106.78398 * 179.97438 * 23 22 20 25 25 C 1.36308 * 107.86276 * 0.06999 * 24 23 22 26 26 N 1.29789 * 108.91900 * 359.91165 * 25 24 23 27 27 C 1.51104 * 123.90204 * 179.90716 * 25 24 23 28 28 C 1.53394 * 108.19413 * 344.05052 * 27 25 24 29 29 C 1.53138 * 109.28555 * 48.93019 * 28 27 25 30 30 C 1.46579 * 127.50307 * 180.14564 * 24 23 22 31 31 H 1.09002 * 109.47402 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.47142 * 299.99946 * 1 2 3 33 33 H 1.09001 * 109.47023 * 60.00033 * 1 2 3 34 34 H 0.97002 * 120.00390 * 105.23664 * 4 2 1 35 35 H 0.96996 * 119.99704 * 179.97438 * 8 7 5 36 36 H 1.09003 * 109.63698 * 54.55012 * 15 13 2 37 37 H 1.09010 * 109.45824 * 294.43051 * 15 13 2 38 38 H 1.09003 * 109.45856 * 178.48824 * 16 15 13 39 39 H 1.08997 * 109.45621 * 58.52730 * 16 15 13 40 40 H 1.08997 * 109.50175 * 301.41552 * 17 16 15 41 41 H 1.08993 * 109.49955 * 181.31497 * 17 16 15 42 42 H 1.08997 * 109.58660 * 185.58019 * 18 17 16 43 43 H 1.09000 * 109.70321 * 65.21724 * 18 17 16 44 44 H 1.08003 * 126.60998 * 359.96963 * 23 22 20 45 45 H 1.08996 * 109.71879 * 224.37978 * 27 25 24 46 46 H 1.08994 * 109.75411 * 103.74366 * 27 25 24 47 47 H 1.08998 * 109.50753 * 168.88539 * 28 27 25 48 48 H 1.09000 * 109.50586 * 288.97834 * 28 27 25 49 49 H 1.09004 * 109.46341 * 50.24467 * 29 28 27 50 50 H 1.09000 * 109.45814 * 170.20881 * 29 28 27 51 51 H 1.09005 * 109.58475 * 282.55785 * 30 24 23 52 52 H 1.09002 * 109.58525 * 42.82438 * 30 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 1.9526 -0.0745 2.4172 6 1 1.5405 0.9205 2.4986 7 6 2.4158 -0.7287 3.5506 8 7 2.9186 -1.9410 3.4514 9 14 2.3256 0.1116 5.2165 10 1 0.9097 0.4251 5.5367 11 1 2.8796 -0.7915 6.2570 12 1 3.1149 1.3689 5.1802 13 6 2.0400 -0.7213 -1.2493 14 1 1.8643 -1.7927 -1.1525 15 6 1.3094 -0.1856 -2.4900 16 6 1.9201 -0.8132 -3.7451 17 6 3.3954 -0.4196 -3.8481 18 6 4.1486 -0.9530 -2.6253 19 7 3.4788 -0.4706 -1.4098 20 6 4.1721 0.1844 -0.4576 21 8 3.6215 0.5190 0.5739 22 6 5.5971 0.4951 -0.6664 23 6 6.3863 1.2511 0.1526 24 7 7.6130 1.2804 -0.4071 25 6 7.5657 0.5492 -1.5565 26 7 6.3646 0.0816 -1.7086 27 6 8.7485 0.3442 -2.4743 28 6 9.8170 1.3857 -2.1185 29 6 10.0412 1.3830 -0.6036 30 6 8.8083 1.9621 0.0980 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 -0.3633 0.5138 -0.8900 34 1 2.3881 -1.5844 1.1231 35 1 3.2426 -2.3979 4.2432 36 1 1.4142 0.8983 -2.5372 37 1 0.2527 -0.4466 -2.4300 38 1 1.3866 -0.4560 -4.6260 39 1 1.8370 -1.8983 -3.6857 40 1 3.4807 0.6665 -3.8825 41 1 3.8237 -0.8476 -4.7543 42 1 5.1769 -0.5921 -2.6435 43 1 4.1435 -2.0429 -2.6373 44 1 6.0860 1.7327 1.0715 45 1 8.4371 0.4761 -3.5104 46 1 9.1522 -0.6588 -2.3364 47 1 10.7497 1.1378 -2.6249 48 1 9.4821 2.3734 -2.4351 49 1 10.2056 0.3608 -0.2625 50 1 10.9143 1.9902 -0.3647 51 1 8.7367 3.0292 -0.1123 52 1 8.8905 1.8066 1.1737 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001265999295.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:12:52 Heat of formation + Delta-G solvation = 60.196061 kcal Electronic energy + Delta-G solvation = -32722.540832 eV Core-core repulsion = 28724.023011 eV Total energy + Delta-G solvation = -3998.517821 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -43.40150 -41.16613 -38.11590 -37.48043 -36.66893 -34.52361 -34.03635 -33.47162 -31.46063 -30.83213 -29.55905 -29.31233 -26.76838 -25.88310 -25.19689 -24.20840 -23.45285 -23.11599 -21.55761 -21.28674 -20.12249 -19.92999 -18.84365 -17.96357 -17.16627 -17.06550 -16.79572 -16.63817 -15.77623 -15.48981 -15.42658 -15.40640 -15.06077 -14.92795 -14.87586 -14.61413 -14.57984 -14.39728 -14.14098 -14.00327 -13.71720 -13.53795 -13.38260 -12.93905 -12.77215 -12.73240 -12.55589 -12.44336 -12.23094 -12.10234 -12.02561 -11.95752 -11.79168 -11.68115 -11.63160 -11.50209 -11.19237 -10.77501 -10.63143 -10.34400 -9.84411 -9.46669 -9.19148 -8.51392 -7.73183 -4.90928 0.71970 1.42556 1.47010 1.49286 1.52609 1.70174 2.36117 2.67493 2.79236 3.20307 3.57866 3.59270 3.66954 3.79070 3.82982 3.90239 4.05135 4.11983 4.20388 4.23900 4.32957 4.35055 4.43743 4.44841 4.46617 4.52352 4.58647 4.68809 4.78914 4.87336 4.91225 4.93764 4.95437 4.97300 5.04256 5.09658 5.11466 5.15832 5.16732 5.20220 5.21631 5.28522 5.32663 5.43530 5.49959 5.58877 5.64186 5.74531 6.03849 6.30136 6.47048 6.75790 6.95716 7.51920 7.72037 8.31403 8.55820 9.52631 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.008784 B = 0.004621 C = 0.003200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3186.757522 B = 6058.456248 C = 8747.568763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.182 3.818 3 H 0.034 0.966 4 N -0.695 5.695 5 C -0.164 4.164 6 H 0.056 0.944 7 C -0.095 4.095 8 N -0.984 5.984 9 Si 0.960 3.040 10 H -0.282 1.282 11 H -0.299 1.299 12 H -0.289 1.289 13 C 0.147 3.853 14 H 0.049 0.951 15 C -0.117 4.117 16 C -0.115 4.115 17 C -0.119 4.119 18 C 0.060 3.940 19 N -0.600 5.600 20 C 0.549 3.451 21 O -0.498 6.498 22 C -0.074 4.074 23 C 0.020 3.980 24 N -0.448 5.448 25 C 0.210 3.790 26 N -0.478 5.478 27 C -0.034 4.034 28 C -0.119 4.119 29 C -0.130 4.130 30 C 0.089 3.911 31 H 0.044 0.956 32 H 0.032 0.968 33 H 0.076 0.924 34 H 0.360 0.640 35 H 0.239 0.761 36 H 0.060 0.940 37 H 0.088 0.912 38 H 0.085 0.915 39 H 0.062 0.938 40 H 0.053 0.947 41 H 0.091 0.909 42 H 0.155 0.845 43 H 0.041 0.959 44 H 0.177 0.823 45 H 0.108 0.892 46 H 0.100 0.900 47 H 0.111 0.889 48 H 0.073 0.927 49 H 0.070 0.930 50 H 0.120 0.880 51 H 0.104 0.896 52 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.836 8.097 -20.224 26.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.074 3.926 3 H 0.052 0.948 4 N -0.333 5.333 5 C -0.297 4.297 6 H 0.074 0.926 7 C -0.284 4.284 8 N -0.639 5.639 9 Si 0.792 3.208 10 H -0.208 1.208 11 H -0.226 1.226 12 H -0.217 1.217 13 C 0.044 3.956 14 H 0.066 0.934 15 C -0.156 4.156 16 C -0.153 4.153 17 C -0.157 4.157 18 C -0.062 4.062 19 N -0.334 5.334 20 C 0.336 3.664 21 O -0.371 6.371 22 C -0.202 4.202 23 C -0.120 4.120 24 N -0.130 5.130 25 C -0.054 4.054 26 N -0.198 5.198 27 C -0.072 4.072 28 C -0.156 4.156 29 C -0.168 4.168 30 C -0.031 4.031 31 H 0.063 0.937 32 H 0.051 0.949 33 H 0.095 0.905 34 H 0.191 0.809 35 H 0.048 0.952 36 H 0.079 0.921 37 H 0.106 0.894 38 H 0.104 0.896 39 H 0.081 0.919 40 H 0.072 0.928 41 H 0.110 0.890 42 H 0.171 0.829 43 H 0.060 0.940 44 H 0.194 0.806 45 H 0.126 0.874 46 H 0.118 0.882 47 H 0.129 0.871 48 H 0.091 0.909 49 H 0.088 0.912 50 H 0.138 0.862 51 H 0.122 0.878 52 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 15.340 8.049 -20.089 26.527 hybrid contribution -0.057 0.192 2.415 2.423 sum 15.283 8.241 -17.674 24.776 Atomic orbital electron populations 1.22419 0.97782 1.00833 1.00706 1.20475 0.91502 0.95462 0.85199 0.94781 1.42334 1.72224 1.16033 1.02693 1.19208 1.27770 0.97043 0.85713 0.92625 1.25228 1.04746 0.97904 1.00527 1.69827 1.51786 1.14518 1.27774 0.85360 0.77464 0.76975 0.81043 1.20845 1.22596 1.21664 1.21521 0.80290 0.98101 0.95735 0.93351 1.22017 0.99933 1.00395 0.93234 1.21545 0.95879 1.00592 0.97254 1.21801 0.95586 1.00649 0.97699 1.23041 1.02572 0.97873 0.82757 1.47756 1.08326 1.56873 1.20451 1.17670 0.84831 0.80526 0.83413 1.91289 1.68242 1.51522 1.26023 1.20855 0.95429 1.07163 0.96770 1.22353 0.85272 1.03717 1.00620 1.45443 1.09428 1.38990 1.19134 1.24590 0.96011 0.95313 0.89479 1.69624 1.02112 1.24686 1.23405 1.20527 0.87925 1.01929 0.96852 1.21695 0.99553 0.98987 0.95408 1.21943 0.96185 1.02896 0.95732 1.22498 0.81982 0.97983 1.00663 0.93726 0.94870 0.90543 0.80920 0.95216 0.92118 0.89352 0.89640 0.91935 0.92804 0.89044 0.82912 0.94045 0.80550 0.87357 0.88195 0.87082 0.90854 0.91169 0.86206 0.87825 0.88681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -6.30 8.67 71.98 0.62 -5.68 16 2 C 0.18 8.42 1.82 45.00 0.08 8.50 16 3 H 0.03 1.76 6.37 -2.39 -0.02 1.75 16 4 N -0.70 -39.88 3.23 -322.94 -1.04 -40.92 16 5 C -0.16 -10.26 8.22 84.03 0.69 -9.57 16 6 H 0.06 3.46 7.83 -2.91 -0.02 3.44 16 7 C -0.09 -6.08 5.50 84.86 0.47 -5.61 16 8 N -0.98 -66.91 13.06 21.65 0.28 -66.63 16 9 Si 0.96 51.77 29.55 68.60 2.03 53.79 16 10 H -0.28 -14.55 7.11 99.48 0.71 -13.84 16 11 H -0.30 -16.14 7.11 99.48 0.71 -15.43 16 12 H -0.29 -15.25 7.11 99.48 0.71 -14.54 16 13 C 0.15 5.71 2.62 45.12 0.12 5.83 16 14 H 0.05 2.00 8.12 -2.39 -0.02 1.99 16 15 C -0.12 -3.35 4.46 30.82 0.14 -3.22 16 16 C -0.12 -2.66 5.88 30.62 0.18 -2.48 16 17 C -0.12 -2.89 6.08 30.67 0.19 -2.71 16 18 C 0.06 1.90 6.31 86.36 0.54 2.45 16 19 N -0.60 -23.78 2.97 -798.15 -2.37 -26.15 16 20 C 0.55 25.26 7.43 86.64 0.64 25.90 16 21 O -0.50 -27.20 9.77 -4.09 -0.04 -27.24 16 22 C -0.07 -2.92 6.74 40.52 0.27 -2.65 16 23 C 0.02 0.69 11.33 83.84 0.95 1.64 16 24 N -0.45 -11.12 3.11 -512.79 -1.60 -12.72 16 25 C 0.21 5.18 7.64 138.05 1.06 6.24 16 26 N -0.48 -15.48 7.60 -176.08 -1.34 -16.82 16 27 C -0.03 -0.44 6.33 30.11 0.19 -0.25 16 28 C -0.12 -0.84 5.95 30.77 0.18 -0.66 16 29 C -0.13 -1.04 5.93 30.71 0.18 -0.86 16 30 C 0.09 1.26 6.95 86.44 0.60 1.86 16 31 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 32 H 0.03 1.43 8.02 -2.39 -0.02 1.41 16 33 H 0.08 2.43 6.45 -2.39 -0.02 2.42 16 34 H 0.36 22.67 7.70 -92.71 -0.71 21.96 16 35 H 0.24 15.90 8.31 -92.71 -0.77 15.13 16 36 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 37 H 0.09 2.25 6.71 -2.38 -0.02 2.24 16 38 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 39 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 40 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 41 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 42 H 0.15 4.98 3.62 -60.50 -0.22 4.76 16 43 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 44 H 0.18 6.26 8.06 -2.91 -0.02 6.23 16 45 H 0.11 1.19 8.14 -2.39 -0.02 1.17 16 46 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16 47 H 0.11 0.24 8.14 -2.39 -0.02 0.22 16 48 H 0.07 0.53 8.12 -2.39 -0.02 0.51 16 49 H 0.07 0.71 8.11 -2.38 -0.02 0.69 16 50 H 0.12 0.31 8.14 -2.39 -0.02 0.29 16 51 H 0.10 1.12 8.14 -2.38 -0.02 1.10 16 52 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 Total: -1.00 -86.20 391.77 3.03 -83.17 By element: Atomic # 1 Polarization: 34.80 SS G_CDS: -0.01 Total: 34.79 kcal Atomic # 6 Polarization: 11.62 SS G_CDS: 7.11 Total: 18.73 kcal Atomic # 7 Polarization: -157.19 SS G_CDS: -6.06 Total: -163.25 kcal Atomic # 8 Polarization: -27.20 SS G_CDS: -0.04 Total: -27.24 kcal Atomic # 14 Polarization: 51.77 SS G_CDS: 2.03 Total: 53.79 kcal Total: -86.20 3.03 -83.17 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265999295.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.367 kcal (2) G-P(sol) polarization free energy of solvation -86.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.171 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds