Wall clock time and date at job start Wed Apr 1 2020 05:12:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47453 * 2 1 4 4 N 1.46502 * 109.46861 * 240.00040 * 2 1 3 5 5 C 1.36932 * 120.00452 * 71.04388 * 4 2 1 6 6 H 1.08000 * 119.99665 * 359.97438 * 5 4 2 7 7 C 1.38813 * 120.00513 * 180.02562 * 5 4 2 8 8 N 1.31619 * 119.99609 * 359.97438 * 7 5 4 9 9 Si 1.86794 * 119.99975 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.47168 * 60.00041 * 9 7 5 11 11 H 1.48507 * 109.46762 * 179.97438 * 9 7 5 12 12 H 1.48498 * 109.47529 * 299.99630 * 9 7 5 13 13 C 1.52996 * 109.47287 * 120.00192 * 2 1 3 14 14 H 1.09001 * 109.58618 * 68.02231 * 13 2 1 15 15 C 1.53194 * 109.58630 * 307.59789 * 13 2 1 16 16 C 1.53035 * 109.31522 * 185.57690 * 15 13 2 17 17 C 1.53047 * 109.53925 * 61.36633 * 16 15 13 18 18 C 1.53626 * 109.23617 * 298.51249 * 17 16 15 19 19 N 1.46922 * 108.54489 * 54.85635 * 18 17 16 20 20 C 1.34781 * 120.63007 * 126.37010 * 19 18 17 21 21 O 1.21623 * 119.99697 * 186.64861 * 20 19 18 22 22 C 1.47326 * 119.99938 * 6.64101 * 20 19 18 23 23 C 1.36565 * 126.21019 * 187.18034 * 22 20 19 24 24 N 1.34867 * 106.78906 * 179.97438 * 23 22 20 25 25 C 1.36310 * 107.86269 * 0.08365 * 24 23 22 26 26 N 1.29802 * 108.91767 * 359.89763 * 25 24 23 27 27 C 1.51095 * 123.90315 * 179.84765 * 25 24 23 28 28 C 1.53379 * 108.19323 * 344.09029 * 27 25 24 29 29 C 1.53129 * 109.26017 * 48.94033 * 28 27 25 30 30 C 1.46576 * 127.50174 * 180.12497 * 24 23 22 31 31 H 1.08993 * 109.47512 * 180.02562 * 1 2 3 32 32 H 1.09007 * 109.46919 * 300.00311 * 1 2 3 33 33 H 1.09000 * 109.47079 * 59.99740 * 1 2 3 34 34 H 0.97001 * 119.99777 * 251.03750 * 4 2 1 35 35 H 0.96996 * 119.99546 * 179.97438 * 8 7 5 36 36 H 1.09009 * 109.49686 * 305.52940 * 15 13 2 37 37 H 1.09000 * 109.49782 * 65.61921 * 15 13 2 38 38 H 1.09007 * 109.46161 * 181.38539 * 16 15 13 39 39 H 1.08996 * 109.46343 * 301.34480 * 16 15 13 40 40 H 1.09002 * 109.49725 * 58.58431 * 17 16 15 41 41 H 1.08997 * 109.49585 * 178.65224 * 17 16 15 42 42 H 1.08999 * 109.73749 * 295.11689 * 18 17 16 43 43 H 1.09003 * 109.66171 * 174.55012 * 18 17 16 44 44 H 1.08001 * 126.60554 * 359.94615 * 23 22 20 45 45 H 1.09001 * 109.71998 * 103.75219 * 27 25 24 46 46 H 1.09007 * 109.71540 * 224.39808 * 27 25 24 47 47 H 1.09004 * 109.50376 * 288.99837 * 28 27 25 48 48 H 1.09007 * 109.50131 * 168.87531 * 28 27 25 49 49 H 1.08996 * 109.46501 * 170.18100 * 29 28 27 50 50 H 1.09000 * 109.46551 * 50.19544 * 29 28 27 51 51 H 1.08993 * 109.58664 * 43.00163 * 30 24 23 52 52 H 1.09011 * 109.58610 * 282.58160 * 30 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 1.8833 -0.1064 -2.4273 6 1 1.4165 0.8635 -2.5164 7 6 2.3455 -0.7610 -3.5608 8 7 2.9139 -1.9431 -3.4521 9 14 2.1607 0.0359 -5.2401 10 1 2.8838 1.3328 -5.2549 11 1 2.7305 -0.8600 -6.2784 12 1 0.7214 0.2684 -5.5220 13 6 2.0400 -0.7213 1.2492 14 1 1.7995 -1.7823 1.1823 15 6 1.3810 -0.1198 2.4945 16 6 1.9967 -0.7484 3.7466 17 6 3.4940 -0.4349 3.7934 18 6 4.1776 -1.0450 2.5603 19 7 3.4956 -0.5519 1.3560 20 6 4.1926 0.0394 0.3655 21 8 3.6062 0.5508 -0.5693 22 6 5.6648 0.0663 0.4152 23 6 6.4886 0.7428 -0.4383 24 7 7.7524 0.4971 -0.0366 25 6 7.6936 -0.3232 1.0505 26 7 6.4493 -0.5779 1.3187 27 6 8.9094 -0.8299 1.7908 28 6 10.1386 -0.6092 0.9004 29 6 10.1317 0.8301 0.3775 30 6 8.9924 1.0022 -0.6329 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 -0.3633 0.5139 -0.8900 34 1 2.4373 -1.5618 -1.1162 35 1 3.2365 -2.4006 -4.2442 36 1 1.5465 0.9575 2.5093 37 1 0.3104 -0.3236 2.4739 38 1 1.5123 -0.3401 4.6337 39 1 1.8526 -1.8285 3.7191 40 1 3.6395 0.6454 3.7959 41 1 3.9271 -0.8625 4.6976 42 1 4.1077 -2.1319 2.6007 43 1 5.2252 -0.7448 2.5357 44 1 6.1863 1.3561 -1.2744 45 1 9.0278 -0.2791 2.7239 46 1 8.7944 -1.8930 2.0026 47 1 10.1081 -1.3022 0.0596 48 1 11.0446 -0.7809 1.4817 49 1 11.0835 1.0445 -0.1084 50 1 9.9857 1.5183 1.2101 51 1 8.8769 2.0582 -0.8769 52 1 9.2187 0.4386 -1.5381 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001265999297.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:12:58 Heat of formation + Delta-G solvation = 80.187880 kcal Electronic energy + Delta-G solvation = -32774.402146 eV Core-core repulsion = 28776.751235 eV Total energy + Delta-G solvation = -3997.650911 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -42.22224 -39.66765 -36.88882 -36.33795 -34.91414 -33.46490 -32.22253 -32.00956 -29.88379 -29.59862 -28.51259 -27.59861 -25.40674 -24.23185 -24.02464 -22.71538 -22.24947 -22.03777 -20.19764 -19.81673 -19.00444 -18.60331 -17.04487 -16.52243 -16.06212 -15.82200 -15.25783 -14.78901 -14.58385 -14.46292 -14.22733 -14.10077 -13.87131 -13.79090 -13.57601 -13.41148 -13.16864 -12.93348 -12.80287 -12.58647 -12.21476 -11.90937 -11.82954 -11.77215 -11.47898 -11.40276 -11.32472 -11.10864 -11.00997 -10.83851 -10.64412 -10.54600 -10.45566 -10.35758 -10.06790 -9.61320 -9.54642 -9.31068 -9.13131 -8.58955 -8.17246 -8.04548 -7.68414 -6.35304 -5.39510 -2.59207 2.05943 2.73002 2.74157 3.62126 3.65187 3.67051 3.78363 4.11127 4.29044 4.31292 4.38617 4.43033 4.87547 4.90172 5.00532 5.10254 5.11575 5.13256 5.21767 5.24221 5.33968 5.40520 5.50321 5.51670 5.52531 5.65923 5.75289 5.82143 5.84234 5.89178 5.92810 5.95770 6.08426 6.14175 6.25164 6.30300 6.30839 6.35634 6.41589 6.45849 6.56108 6.61598 6.70254 6.90751 6.97836 7.15098 7.21064 7.37648 7.66308 8.02590 8.06923 8.38305 8.77901 9.31047 9.88860 10.48719 10.84005 11.84947 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.008489 B = 0.004807 C = 0.003262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3297.483933 B = 5824.013031 C = 8581.283049 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.180 3.820 3 H 0.062 0.938 4 N -0.692 5.692 5 C -0.181 4.181 6 H 0.062 0.938 7 C -0.028 4.028 8 N -0.945 5.945 9 Si 0.897 3.103 10 H -0.292 1.292 11 H -0.297 1.297 12 H -0.292 1.292 13 C 0.148 3.852 14 H 0.062 0.938 15 C -0.126 4.126 16 C -0.119 4.119 17 C -0.132 4.132 18 C 0.086 3.914 19 N -0.603 5.603 20 C 0.563 3.437 21 O -0.445 6.445 22 C -0.037 4.037 23 C 0.029 3.971 24 N -0.455 5.455 25 C 0.196 3.804 26 N -0.458 5.458 27 C -0.031 4.031 28 C -0.126 4.126 29 C -0.133 4.133 30 C 0.101 3.899 31 H 0.043 0.957 32 H 0.036 0.964 33 H 0.053 0.947 34 H 0.377 0.623 35 H 0.247 0.753 36 H 0.063 0.937 37 H 0.072 0.928 38 H 0.055 0.945 39 H 0.059 0.941 40 H 0.059 0.941 41 H 0.063 0.937 42 H 0.049 0.951 43 H 0.137 0.863 44 H 0.186 0.814 45 H 0.087 0.913 46 H 0.095 0.905 47 H 0.071 0.929 48 H 0.081 0.919 49 H 0.088 0.912 50 H 0.075 0.925 51 H 0.091 0.909 52 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.630 4.550 16.085 22.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.070 3.930 3 H 0.080 0.920 4 N -0.332 5.332 5 C -0.313 4.313 6 H 0.080 0.920 7 C -0.221 4.221 8 N -0.597 5.597 9 Si 0.730 3.270 10 H -0.220 1.220 11 H -0.223 1.223 12 H -0.219 1.219 13 C 0.045 3.955 14 H 0.080 0.920 15 C -0.165 4.165 16 C -0.157 4.157 17 C -0.170 4.170 18 C -0.038 4.038 19 N -0.339 5.339 20 C 0.348 3.652 21 O -0.313 6.313 22 C -0.166 4.166 23 C -0.108 4.108 24 N -0.139 5.139 25 C -0.067 4.067 26 N -0.179 5.179 27 C -0.070 4.070 28 C -0.164 4.164 29 C -0.171 4.171 30 C -0.021 4.021 31 H 0.062 0.938 32 H 0.055 0.945 33 H 0.072 0.928 34 H 0.211 0.789 35 H 0.057 0.943 36 H 0.082 0.918 37 H 0.091 0.909 38 H 0.074 0.926 39 H 0.078 0.922 40 H 0.077 0.923 41 H 0.081 0.919 42 H 0.068 0.932 43 H 0.154 0.846 44 H 0.203 0.797 45 H 0.105 0.895 46 H 0.113 0.887 47 H 0.090 0.910 48 H 0.099 0.901 49 H 0.106 0.894 50 H 0.094 0.906 51 H 0.109 0.891 52 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 14.085 4.545 15.920 21.737 hybrid contribution 0.314 0.445 -1.727 1.811 sum 14.399 4.990 14.193 20.824 Atomic orbital electron populations 1.22569 0.99970 1.00552 0.99820 1.20481 0.90235 0.97093 0.85153 0.92036 1.42298 1.69633 1.20106 1.01181 1.19000 1.28502 0.99803 0.83980 0.91968 1.24537 1.03175 0.97382 0.97011 1.69650 1.47754 1.14855 1.27402 0.86382 0.77230 0.78000 0.85392 1.21983 1.22302 1.21907 1.21433 0.79319 0.99317 0.95480 0.91980 1.21984 0.99739 1.00519 0.94239 1.21533 0.95871 1.00657 0.97595 1.21996 0.95697 1.01011 0.98316 1.22526 1.00651 0.97671 0.82916 1.47531 1.06645 1.60846 1.18890 1.16981 0.83719 0.81951 0.82541 1.91203 1.66965 1.41374 1.31767 1.21017 0.94876 1.03582 0.97088 1.22419 0.82206 1.04268 1.01928 1.45175 1.06514 1.37606 1.24577 1.23532 0.94967 0.97312 0.90846 1.70080 0.99714 1.22977 1.25098 1.20178 0.87431 1.02388 0.96982 1.21677 0.98134 0.96388 1.00241 1.21882 0.97881 0.98186 0.99157 1.22031 0.82066 1.00809 0.97171 0.93812 0.94469 0.92797 0.78943 0.94346 0.91816 0.90923 0.92591 0.92182 0.92269 0.91867 0.93231 0.84624 0.79740 0.89451 0.88698 0.90995 0.90062 0.89363 0.90621 0.89058 0.89551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.37 8.75 37.16 0.33 -3.04 16 2 C 0.18 4.00 1.80 -67.93 -0.12 3.87 16 3 H 0.06 1.50 6.36 -51.93 -0.33 1.17 16 4 N -0.69 -18.78 3.08 -53.43 -0.16 -18.95 16 5 C -0.18 -5.38 8.31 -15.06 -0.13 -5.51 16 6 H 0.06 1.85 7.83 -52.49 -0.41 1.44 16 7 C -0.03 -0.86 5.50 -17.43 -0.10 -0.95 16 8 N -0.94 -30.63 13.06 55.49 0.72 -29.90 16 9 Si 0.90 24.17 29.55 -169.99 -5.02 19.15 16 10 H -0.29 -7.80 7.11 56.52 0.40 -7.39 16 11 H -0.30 -8.05 7.11 56.52 0.40 -7.65 16 12 H -0.29 -7.72 7.11 56.52 0.40 -7.32 16 13 C 0.15 2.80 2.56 -67.60 -0.17 2.62 16 14 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 15 C -0.13 -1.89 4.59 -26.61 -0.12 -2.01 16 16 C -0.12 -1.52 5.88 -26.69 -0.16 -1.68 16 17 C -0.13 -1.72 6.10 -26.38 -0.16 -1.88 16 18 C 0.09 1.36 6.13 -3.49 -0.02 1.34 16 19 N -0.60 -11.51 2.97 -166.25 -0.49 -12.01 16 20 C 0.56 12.26 7.31 -12.56 -0.09 12.17 16 21 O -0.45 -11.29 9.99 5.26 0.05 -11.23 16 22 C -0.04 -0.71 6.67 -82.98 -0.55 -1.27 16 23 C 0.03 0.49 11.33 -16.82 -0.19 0.30 16 24 N -0.46 -6.02 3.11 -113.42 -0.35 -6.37 16 25 C 0.20 2.64 7.64 -154.63 -1.18 1.46 16 26 N -0.46 -7.64 7.75 -7.01 -0.05 -7.69 16 27 C -0.03 -0.27 6.33 -27.49 -0.17 -0.44 16 28 C -0.13 -0.80 5.95 -26.47 -0.16 -0.96 16 29 C -0.13 -0.79 5.93 -26.54 -0.16 -0.95 16 30 C 0.10 0.87 6.96 -3.87 -0.03 0.84 16 31 H 0.04 0.87 8.14 -51.93 -0.42 0.44 16 32 H 0.04 0.61 6.46 -51.93 -0.34 0.28 16 33 H 0.05 1.16 7.93 -51.93 -0.41 0.74 16 34 H 0.38 11.17 7.65 -40.82 -0.31 10.86 16 35 H 0.25 7.83 8.31 -40.82 -0.34 7.49 16 36 H 0.06 0.98 8.14 -51.92 -0.42 0.56 16 37 H 0.07 1.01 6.69 -51.93 -0.35 0.66 16 38 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 41 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 42 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 43 H 0.14 2.21 4.09 -62.19 -0.25 1.95 16 44 H 0.19 3.09 8.06 -52.49 -0.42 2.67 16 45 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 46 H 0.09 0.79 8.14 -51.92 -0.42 0.37 16 47 H 0.07 0.52 8.12 -51.93 -0.42 0.10 16 48 H 0.08 0.35 8.14 -51.92 -0.42 -0.08 16 49 H 0.09 0.34 8.14 -51.93 -0.42 -0.08 16 50 H 0.08 0.45 8.11 -51.93 -0.42 0.03 16 51 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 52 H 0.09 0.70 8.14 -51.92 -0.42 0.28 16 LS Contribution 392.17 15.07 5.91 5.91 Total: -1.00 -36.53 392.17 -11.31 -47.84 By element: Atomic # 1 Polarization: 18.05 SS G_CDS: -8.72 Total: 9.33 kcal Atomic # 6 Polarization: 7.11 SS G_CDS: -3.19 Total: 3.93 kcal Atomic # 7 Polarization: -74.58 SS G_CDS: -0.34 Total: -74.92 kcal Atomic # 8 Polarization: -11.29 SS G_CDS: 0.05 Total: -11.23 kcal Atomic # 14 Polarization: 24.17 SS G_CDS: -5.02 Total: 19.15 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -36.53 -11.31 -47.84 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265999297.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.027 kcal (2) G-P(sol) polarization free energy of solvation -36.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.839 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds