Wall clock time and date at job start Wed Apr 1 2020 05:12:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47453 * 2 1 4 4 N 1.46502 * 109.46861 * 240.00040 * 2 1 3 5 5 C 1.36932 * 120.00452 * 71.04388 * 4 2 1 6 6 H 1.08000 * 119.99665 * 359.97438 * 5 4 2 7 7 C 1.38813 * 120.00513 * 180.02562 * 5 4 2 8 8 N 1.31619 * 119.99609 * 359.97438 * 7 5 4 9 9 Si 1.86794 * 119.99975 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.47168 * 60.00041 * 9 7 5 11 11 H 1.48507 * 109.46762 * 179.97438 * 9 7 5 12 12 H 1.48498 * 109.47529 * 299.99630 * 9 7 5 13 13 C 1.52996 * 109.47287 * 120.00192 * 2 1 3 14 14 H 1.09001 * 109.58618 * 68.02231 * 13 2 1 15 15 C 1.53194 * 109.58630 * 307.59789 * 13 2 1 16 16 C 1.53035 * 109.31522 * 185.57690 * 15 13 2 17 17 C 1.53047 * 109.53925 * 61.36633 * 16 15 13 18 18 C 1.53626 * 109.23617 * 298.51249 * 17 16 15 19 19 N 1.46922 * 108.54489 * 54.85635 * 18 17 16 20 20 C 1.34781 * 120.63007 * 126.37010 * 19 18 17 21 21 O 1.21623 * 119.99697 * 186.64861 * 20 19 18 22 22 C 1.47326 * 119.99938 * 6.64101 * 20 19 18 23 23 C 1.36565 * 126.21019 * 187.18034 * 22 20 19 24 24 N 1.34867 * 106.78906 * 179.97438 * 23 22 20 25 25 C 1.36310 * 107.86269 * 0.08365 * 24 23 22 26 26 N 1.29802 * 108.91767 * 359.89763 * 25 24 23 27 27 C 1.51095 * 123.90315 * 179.84765 * 25 24 23 28 28 C 1.53379 * 108.19323 * 344.09029 * 27 25 24 29 29 C 1.53129 * 109.26017 * 48.94033 * 28 27 25 30 30 C 1.46576 * 127.50174 * 180.12497 * 24 23 22 31 31 H 1.08993 * 109.47512 * 180.02562 * 1 2 3 32 32 H 1.09007 * 109.46919 * 300.00311 * 1 2 3 33 33 H 1.09000 * 109.47079 * 59.99740 * 1 2 3 34 34 H 0.97001 * 119.99777 * 251.03750 * 4 2 1 35 35 H 0.96996 * 119.99546 * 179.97438 * 8 7 5 36 36 H 1.09009 * 109.49686 * 305.52940 * 15 13 2 37 37 H 1.09000 * 109.49782 * 65.61921 * 15 13 2 38 38 H 1.09007 * 109.46161 * 181.38539 * 16 15 13 39 39 H 1.08996 * 109.46343 * 301.34480 * 16 15 13 40 40 H 1.09002 * 109.49725 * 58.58431 * 17 16 15 41 41 H 1.08997 * 109.49585 * 178.65224 * 17 16 15 42 42 H 1.08999 * 109.73749 * 295.11689 * 18 17 16 43 43 H 1.09003 * 109.66171 * 174.55012 * 18 17 16 44 44 H 1.08001 * 126.60554 * 359.94615 * 23 22 20 45 45 H 1.09001 * 109.71998 * 103.75219 * 27 25 24 46 46 H 1.09007 * 109.71540 * 224.39808 * 27 25 24 47 47 H 1.09004 * 109.50376 * 288.99837 * 28 27 25 48 48 H 1.09007 * 109.50131 * 168.87531 * 28 27 25 49 49 H 1.08996 * 109.46501 * 170.18100 * 29 28 27 50 50 H 1.09000 * 109.46551 * 50.19544 * 29 28 27 51 51 H 1.08993 * 109.58664 * 43.00163 * 30 24 23 52 52 H 1.09011 * 109.58610 * 282.58160 * 30 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 1.8833 -0.1064 -2.4273 6 1 1.4165 0.8635 -2.5164 7 6 2.3455 -0.7610 -3.5608 8 7 2.9139 -1.9431 -3.4521 9 14 2.1607 0.0359 -5.2401 10 1 2.8838 1.3328 -5.2549 11 1 2.7305 -0.8600 -6.2784 12 1 0.7214 0.2684 -5.5220 13 6 2.0400 -0.7213 1.2492 14 1 1.7995 -1.7823 1.1823 15 6 1.3810 -0.1198 2.4945 16 6 1.9967 -0.7484 3.7466 17 6 3.4940 -0.4349 3.7934 18 6 4.1776 -1.0450 2.5603 19 7 3.4956 -0.5519 1.3560 20 6 4.1926 0.0394 0.3655 21 8 3.6062 0.5508 -0.5693 22 6 5.6648 0.0663 0.4152 23 6 6.4886 0.7428 -0.4383 24 7 7.7524 0.4971 -0.0366 25 6 7.6936 -0.3232 1.0505 26 7 6.4493 -0.5779 1.3187 27 6 8.9094 -0.8299 1.7908 28 6 10.1386 -0.6092 0.9004 29 6 10.1317 0.8301 0.3775 30 6 8.9924 1.0022 -0.6329 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 -0.3633 0.5139 -0.8900 34 1 2.4373 -1.5618 -1.1162 35 1 3.2365 -2.4006 -4.2442 36 1 1.5465 0.9575 2.5093 37 1 0.3104 -0.3236 2.4739 38 1 1.5123 -0.3401 4.6337 39 1 1.8526 -1.8285 3.7191 40 1 3.6395 0.6454 3.7959 41 1 3.9271 -0.8625 4.6976 42 1 4.1077 -2.1319 2.6007 43 1 5.2252 -0.7448 2.5357 44 1 6.1863 1.3561 -1.2744 45 1 9.0278 -0.2791 2.7239 46 1 8.7944 -1.8930 2.0026 47 1 10.1081 -1.3022 0.0596 48 1 11.0446 -0.7809 1.4817 49 1 11.0835 1.0445 -0.1084 50 1 9.9857 1.5183 1.2101 51 1 8.8769 2.0582 -0.8769 52 1 9.2187 0.4386 -1.5381 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001265999297.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:12:57 Heat of formation + Delta-G solvation = 57.759489 kcal Electronic energy + Delta-G solvation = -32775.374714 eV Core-core repulsion = 28776.751235 eV Total energy + Delta-G solvation = -3998.623479 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -43.37383 -41.19156 -38.11381 -37.46948 -36.66610 -34.50542 -34.04815 -33.48269 -31.46757 -30.81349 -29.54428 -29.33210 -26.76705 -25.91002 -25.18809 -24.19047 -23.43973 -23.10001 -21.59123 -21.29346 -20.10771 -19.91358 -18.86707 -17.95993 -17.12024 -17.04107 -16.74221 -16.67868 -15.88749 -15.57877 -15.45642 -15.26620 -15.09225 -14.92845 -14.79763 -14.75384 -14.48401 -14.38187 -14.18542 -13.98535 -13.72633 -13.50693 -13.36531 -12.97828 -12.77607 -12.72429 -12.55862 -12.43193 -12.20852 -12.11212 -11.98500 -11.96209 -11.80532 -11.69818 -11.62467 -11.49605 -11.19740 -10.81029 -10.69134 -10.38860 -9.81237 -9.50143 -9.20178 -8.51879 -7.75260 -4.93638 0.73476 1.41932 1.46487 1.50721 1.51885 1.71736 2.35615 2.65984 2.79259 3.23292 3.57380 3.58924 3.67726 3.79384 3.82761 3.89571 4.05341 4.10993 4.19849 4.24405 4.33051 4.34770 4.42929 4.44022 4.46885 4.51791 4.59802 4.68745 4.78812 4.87319 4.91781 4.94455 4.95392 4.97673 5.03645 5.08911 5.12188 5.15163 5.17624 5.20870 5.22217 5.28859 5.32136 5.43958 5.49530 5.59028 5.64013 5.70692 6.04358 6.26046 6.45019 6.75532 6.94979 7.49799 7.70600 8.29091 8.53216 9.50204 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.008489 B = 0.004807 C = 0.003262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3297.483933 B = 5824.013031 C = 8581.283049 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.179 3.821 3 H 0.038 0.962 4 N -0.698 5.698 5 C -0.170 4.170 6 H 0.057 0.943 7 C -0.093 4.093 8 N -0.982 5.982 9 Si 0.961 3.039 10 H -0.289 1.289 11 H -0.299 1.299 12 H -0.281 1.281 13 C 0.149 3.851 14 H 0.050 0.950 15 C -0.118 4.118 16 C -0.114 4.114 17 C -0.123 4.123 18 C 0.081 3.919 19 N -0.602 5.602 20 C 0.556 3.444 21 O -0.501 6.501 22 C -0.075 4.075 23 C 0.019 3.981 24 N -0.449 5.449 25 C 0.206 3.794 26 N -0.479 5.479 27 C -0.031 4.031 28 C -0.122 4.122 29 C -0.126 4.126 30 C 0.088 3.912 31 H 0.042 0.958 32 H 0.076 0.924 33 H 0.032 0.968 34 H 0.360 0.640 35 H 0.240 0.760 36 H 0.060 0.940 37 H 0.089 0.911 38 H 0.086 0.914 39 H 0.064 0.936 40 H 0.054 0.946 41 H 0.093 0.907 42 H 0.046 0.954 43 H 0.136 0.864 44 H 0.176 0.824 45 H 0.110 0.890 46 H 0.099 0.901 47 H 0.061 0.939 48 H 0.113 0.887 49 H 0.118 0.882 50 H 0.080 0.920 51 H 0.104 0.896 52 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.379 5.137 18.684 25.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.071 3.929 3 H 0.056 0.944 4 N -0.336 5.336 5 C -0.304 4.304 6 H 0.075 0.925 7 C -0.283 4.283 8 N -0.637 5.637 9 Si 0.792 3.208 10 H -0.216 1.216 11 H -0.226 1.226 12 H -0.208 1.208 13 C 0.045 3.955 14 H 0.068 0.932 15 C -0.156 4.156 16 C -0.151 4.151 17 C -0.161 4.161 18 C -0.041 4.041 19 N -0.337 5.337 20 C 0.342 3.658 21 O -0.374 6.374 22 C -0.203 4.203 23 C -0.121 4.121 24 N -0.131 5.131 25 C -0.058 4.058 26 N -0.200 5.200 27 C -0.070 4.070 28 C -0.160 4.160 29 C -0.163 4.163 30 C -0.032 4.032 31 H 0.061 0.939 32 H 0.095 0.905 33 H 0.051 0.949 34 H 0.191 0.809 35 H 0.048 0.952 36 H 0.078 0.922 37 H 0.107 0.893 38 H 0.104 0.896 39 H 0.082 0.918 40 H 0.073 0.927 41 H 0.111 0.889 42 H 0.064 0.936 43 H 0.152 0.848 44 H 0.193 0.807 45 H 0.128 0.872 46 H 0.117 0.883 47 H 0.080 0.920 48 H 0.132 0.868 49 H 0.136 0.864 50 H 0.099 0.901 51 H 0.122 0.878 52 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 15.832 5.159 18.590 24.957 hybrid contribution -0.099 0.299 -2.425 2.445 sum 15.733 5.458 16.165 23.208 Atomic orbital electron populations 1.22407 0.97851 1.00750 1.00731 1.20556 0.91474 0.95793 0.85067 0.94402 1.42376 1.69743 1.19443 1.02013 1.19230 1.26679 0.99132 0.85318 0.92487 1.25246 1.04226 0.98256 1.00524 1.69833 1.49785 1.16418 1.27681 0.85352 0.77487 0.76921 0.81018 1.21625 1.22554 1.20782 1.21413 0.79781 0.98375 0.95917 0.93179 1.21938 1.00426 1.00098 0.93182 1.21529 0.95460 1.00885 0.97264 1.21944 0.95925 1.00595 0.97676 1.22715 1.00978 0.97549 0.82890 1.47703 1.06836 1.59867 1.19318 1.17498 0.85073 0.80990 0.82218 1.91150 1.68330 1.44238 1.33647 1.20847 0.94140 1.05975 0.99295 1.22343 0.83990 1.04199 1.01575 1.45441 1.06539 1.36885 1.24203 1.24578 0.95508 0.95458 0.90224 1.70004 1.00905 1.23784 1.25274 1.20500 0.86026 1.02721 0.97772 1.21711 0.98070 0.96357 0.99889 1.21925 0.97666 0.98040 0.98661 1.22507 0.80982 1.01511 0.98248 0.93871 0.90504 0.94869 0.80935 0.95177 0.92171 0.89270 0.89581 0.91766 0.92749 0.88900 0.93580 0.84766 0.80682 0.87179 0.88263 0.91971 0.86838 0.86362 0.90098 0.87790 0.89181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -6.32 8.75 71.98 0.63 -5.69 16 2 C 0.18 8.28 1.80 44.99 0.08 8.36 16 3 H 0.04 1.96 6.36 -2.39 -0.02 1.94 16 4 N -0.70 -39.96 3.08 -322.94 -0.99 -40.95 16 5 C -0.17 -10.63 8.31 84.03 0.70 -9.93 16 6 H 0.06 3.54 7.83 -2.91 -0.02 3.52 16 7 C -0.09 -5.95 5.50 84.86 0.47 -5.48 16 8 N -0.98 -66.58 13.06 21.65 0.28 -66.30 16 9 Si 0.96 51.61 29.55 68.60 2.03 53.64 16 10 H -0.29 -15.19 7.11 99.48 0.71 -14.48 16 11 H -0.30 -16.04 7.11 99.48 0.71 -15.33 16 12 H -0.28 -14.47 7.11 99.48 0.71 -13.76 16 13 C 0.15 5.73 2.56 44.97 0.11 5.84 16 14 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 15 C -0.12 -3.34 4.59 30.67 0.14 -3.20 16 16 C -0.11 -2.58 5.88 30.62 0.18 -2.40 16 17 C -0.12 -2.95 6.10 30.82 0.19 -2.76 16 18 C 0.08 2.56 6.13 86.51 0.53 3.09 16 19 N -0.60 -23.87 2.97 -798.15 -2.37 -26.24 16 20 C 0.56 25.78 7.31 86.63 0.63 26.41 16 21 O -0.50 -27.32 9.99 -4.11 -0.04 -27.36 16 22 C -0.07 -3.03 6.67 40.52 0.27 -2.76 16 23 C 0.02 0.67 11.33 83.84 0.95 1.62 16 24 N -0.45 -11.83 3.11 -512.75 -1.60 -13.43 16 25 C 0.21 5.42 7.64 138.05 1.05 6.48 16 26 N -0.48 -16.28 7.75 -176.08 -1.37 -17.64 16 27 C -0.03 -0.46 6.33 30.10 0.19 -0.27 16 28 C -0.12 -1.12 5.95 30.76 0.18 -0.93 16 29 C -0.13 -1.04 5.93 30.72 0.18 -0.86 16 30 C 0.09 1.36 6.96 86.45 0.60 1.97 16 31 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 32 H 0.08 2.44 6.46 -2.38 -0.02 2.42 16 33 H 0.03 1.43 7.93 -2.39 -0.02 1.42 16 34 H 0.36 22.66 7.65 -92.71 -0.71 21.95 16 35 H 0.24 15.87 8.31 -92.71 -0.77 15.10 16 36 H 0.06 1.77 8.14 -2.38 -0.02 1.75 16 37 H 0.09 2.24 6.69 -2.39 -0.02 2.22 16 38 H 0.09 1.52 8.14 -2.38 -0.02 1.50 16 39 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 40 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 41 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 42 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 43 H 0.14 4.40 4.09 -22.65 -0.09 4.30 16 44 H 0.18 6.46 8.06 -2.91 -0.02 6.43 16 45 H 0.11 1.18 8.14 -2.39 -0.02 1.16 16 46 H 0.10 1.42 8.14 -2.38 -0.02 1.40 16 47 H 0.06 0.72 8.12 -2.39 -0.02 0.71 16 48 H 0.11 0.40 8.14 -2.38 -0.02 0.38 16 49 H 0.12 0.37 8.14 -2.39 -0.02 0.35 16 50 H 0.08 0.65 8.11 -2.39 -0.02 0.63 16 51 H 0.10 1.36 8.14 -2.39 -0.02 1.34 16 52 H 0.09 1.36 8.14 -2.38 -0.02 1.34 16 Total: -1.00 -86.04 392.17 3.17 -82.87 By element: Atomic # 1 Polarization: 35.81 SS G_CDS: 0.13 Total: 35.93 kcal Atomic # 6 Polarization: 12.39 SS G_CDS: 7.10 Total: 19.48 kcal Atomic # 7 Polarization: -158.53 SS G_CDS: -6.04 Total: -164.57 kcal Atomic # 8 Polarization: -27.32 SS G_CDS: -0.04 Total: -27.36 kcal Atomic # 14 Polarization: 51.61 SS G_CDS: 2.03 Total: 53.64 kcal Total: -86.04 3.17 -82.87 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265999297.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.629 kcal (2) G-P(sol) polarization free energy of solvation -86.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.869 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds