Wall clock time and date at job start Wed Apr 1 2020 05:14:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09009 * 109.47291 * 2 1 4 4 N 1.46492 * 109.47580 * 239.99498 * 2 1 3 5 5 C 1.36944 * 120.00127 * 74.13995 * 4 2 1 6 6 H 1.07996 * 119.99610 * 359.97438 * 5 4 2 7 7 C 1.38809 * 120.00054 * 180.02562 * 5 4 2 8 8 N 1.31613 * 120.00120 * 359.97438 * 7 5 4 9 9 Si 1.86802 * 119.99790 * 179.97438 * 7 5 4 10 10 H 1.48498 * 109.47082 * 89.99921 * 9 7 5 11 11 H 1.48494 * 109.47237 * 209.99779 * 9 7 5 12 12 H 1.48499 * 109.47324 * 329.99976 * 9 7 5 13 13 C 1.52998 * 109.47185 * 119.99320 * 2 1 3 14 14 H 1.08999 * 109.58706 * 67.05299 * 13 2 1 15 15 C 1.53195 * 109.70687 * 306.69925 * 13 2 1 16 16 C 1.53033 * 109.31677 * 185.50295 * 15 13 2 17 17 C 1.53043 * 109.53998 * 61.36353 * 16 15 13 18 18 C 1.53195 * 109.31303 * 298.63737 * 17 16 15 19 19 N 1.46925 * 109.59043 * 187.33639 * 13 2 1 20 20 C 1.34770 * 120.63059 * 353.56248 * 19 13 2 21 21 O 1.21279 * 119.99861 * 5.67337 * 20 19 13 22 22 C 1.50708 * 119.99969 * 185.67084 * 20 19 13 23 23 N 1.46501 * 109.46769 * 180.02562 * 22 20 19 24 24 C 1.34943 * 126.03703 * 125.00273 * 23 22 20 25 25 C 1.35318 * 107.74735 * 179.97438 * 24 23 22 26 26 C 1.50701 * 126.03624 * 180.02562 * 25 24 23 27 27 C 1.53006 * 117.49393 * 188.61894 * 26 25 24 28 28 C 1.53000 * 117.49958 * 119.99999 * 26 25 24 29 29 C 1.39868 * 107.92052 * 359.97438 * 25 24 23 30 30 N 1.30838 * 108.19977 * 359.73944 * 29 25 24 31 31 H 1.08992 * 109.47133 * 185.61449 * 1 2 3 32 32 H 1.08999 * 109.47056 * 305.61673 * 1 2 3 33 33 H 1.09003 * 109.46597 * 65.61416 * 1 2 3 34 34 H 0.97004 * 120.00720 * 254.13690 * 4 2 1 35 35 H 0.97010 * 120.00044 * 179.97438 * 8 7 5 36 36 H 1.08999 * 109.49402 * 305.45773 * 15 13 2 37 37 H 1.09003 * 109.49462 * 65.54934 * 15 13 2 38 38 H 1.09006 * 109.46231 * 301.34603 * 16 15 13 39 39 H 1.08992 * 109.46509 * 181.38685 * 16 15 13 40 40 H 1.08998 * 109.50085 * 178.68185 * 17 16 15 41 41 H 1.09006 * 109.52137 * 58.59958 * 17 16 15 42 42 H 1.08993 * 109.58370 * 294.84495 * 18 17 16 43 43 H 1.08995 * 109.58483 * 174.41713 * 18 17 16 44 44 H 1.08994 * 109.47283 * 299.99740 * 22 20 19 45 45 H 1.08998 * 109.46914 * 60.00224 * 22 20 19 46 46 H 1.08003 * 126.12620 * 359.97438 * 24 23 22 47 47 H 1.09002 * 115.55432 * 334.32358 * 26 25 24 48 48 H 1.08993 * 117.49978 * 0.02562 * 27 26 25 49 49 H 1.09005 * 117.49398 * 145.01999 * 27 26 25 50 50 H 1.08999 * 117.49712 * 214.97371 * 28 26 25 51 51 H 1.08997 * 117.49686 * 359.97438 * 28 26 25 52 52 H 1.07995 * 125.89651 * 180.02562 * 29 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0184 -0.6907 -1.1960 5 6 1.9411 -0.0796 -2.4191 6 1 1.5197 0.9113 -2.5020 7 6 2.4034 -0.7343 -3.5525 8 7 2.9165 -1.9421 -3.4515 9 14 2.2974 0.0990 -5.2210 10 1 3.5390 0.8757 -5.4662 11 1 2.1404 -0.9306 -6.2794 12 1 1.1283 1.0144 -5.2437 13 6 2.0400 -0.7211 1.2493 14 1 1.7843 -1.7790 1.1905 15 6 1.3996 -0.1067 2.4980 16 6 2.0169 -0.7396 3.7471 17 6 3.5186 -0.4466 3.7805 18 6 4.1831 -1.0649 2.5464 19 7 3.4985 -0.5714 1.3436 20 6 4.1953 0.0079 0.3459 21 8 3.6104 0.5035 -0.5939 22 6 5.7011 0.0399 0.3982 23 7 6.2166 0.7194 -0.7929 24 6 7.0499 1.7808 -0.8032 25 6 7.2869 2.1066 -2.0950 26 6 8.1644 3.2323 -2.5787 27 6 8.1381 3.5559 -4.0739 28 6 9.3594 2.8671 -3.4617 29 6 6.5746 1.2134 -2.9018 30 7 5.9374 0.3777 -2.1224 31 1 -0.3633 -1.0227 0.1005 32 1 -0.3633 0.5985 0.8354 33 1 -0.3632 0.4243 -0.9360 34 1 2.3966 -1.5808 -1.1217 35 1 3.2393 -2.3997 -4.2436 36 1 1.5799 0.9682 2.5078 37 1 0.3262 -0.2959 2.4869 38 1 1.8578 -1.8178 3.7244 39 1 1.5456 -0.3220 4.6367 40 1 3.9535 -0.8777 4.6823 41 1 3.6795 0.6315 3.7786 42 1 4.1021 -2.1508 2.5934 43 1 5.2335 -0.7757 2.5136 44 1 6.0224 0.5774 1.2903 45 1 6.0852 -0.9797 0.4301 46 1 7.4550 2.2807 0.0643 47 1 8.2867 4.0645 -1.8854 48 1 7.4858 2.9551 -4.7075 49 1 8.2428 4.6013 -4.3644 50 1 10.2676 3.4593 -3.3495 51 1 9.5111 1.8127 -3.6923 52 1 6.5576 1.2109 -3.9816 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001266001530.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:14:55 Heat of formation + Delta-G solvation = 135.750828 kcal Electronic energy + Delta-G solvation = -32706.644103 eV Core-core repulsion = 28711.402583 eV Total energy + Delta-G solvation = -3995.241520 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -40.87922 -39.97591 -37.09672 -36.62049 -35.27449 -32.81415 -32.27463 -32.06534 -29.82950 -29.64654 -27.79414 -27.27092 -24.64127 -24.18740 -22.68037 -22.56815 -22.23644 -21.26111 -20.32147 -19.91405 -19.54750 -18.49395 -16.80729 -16.66550 -16.35756 -15.55972 -15.30354 -14.97293 -14.60276 -14.49255 -14.32073 -13.94719 -13.87393 -13.62247 -13.36569 -13.18740 -12.95370 -12.71696 -12.52817 -12.32022 -12.11174 -11.93426 -11.92983 -11.63490 -11.38611 -11.36071 -11.10936 -10.88395 -10.86689 -10.63736 -10.58692 -10.56188 -10.36502 -10.25210 -10.08496 -9.76337 -9.63866 -9.31735 -8.98672 -8.56790 -8.20036 -7.94087 -7.75591 -6.34785 -5.36143 -2.55974 2.32735 2.85330 3.24900 3.37020 3.52125 3.65524 3.70161 3.70650 4.19561 4.67097 4.71821 4.80664 4.85899 4.94187 4.99344 5.05201 5.07538 5.12584 5.21313 5.22135 5.34790 5.39655 5.45100 5.58310 5.60771 5.62227 5.74837 5.76836 5.82143 5.89763 5.97234 5.98503 6.02837 6.06581 6.08524 6.12027 6.17489 6.26215 6.36284 6.37700 6.47342 6.51899 6.53168 6.84341 6.95652 7.09663 7.14706 7.38353 7.43752 7.98637 8.06467 8.32883 8.79386 9.03853 9.92553 10.46669 10.81994 11.88103 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.008830 B = 0.004864 C = 0.003398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3170.423443 B = 5754.632583 C = 8237.333532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.182 3.818 3 H 0.057 0.943 4 N -0.688 5.688 5 C -0.186 4.186 6 H 0.057 0.943 7 C -0.010 4.010 8 N -0.934 5.934 9 Si 0.891 3.109 10 H -0.294 1.294 11 H -0.299 1.299 12 H -0.290 1.290 13 C 0.151 3.849 14 H 0.064 0.936 15 C -0.128 4.128 16 C -0.118 4.118 17 C -0.133 4.133 18 C 0.112 3.888 19 N -0.619 5.619 20 C 0.453 3.547 21 O -0.395 6.395 22 C 0.123 3.877 23 N -0.359 5.359 24 C 0.044 3.956 25 C -0.209 4.209 26 C -0.066 4.066 27 C -0.178 4.178 28 C -0.179 4.179 29 C 0.034 3.966 30 N -0.208 5.208 31 H 0.041 0.959 32 H 0.034 0.966 33 H 0.056 0.944 34 H 0.377 0.623 35 H 0.245 0.755 36 H 0.064 0.936 37 H 0.074 0.926 38 H 0.062 0.938 39 H 0.060 0.940 40 H 0.068 0.932 41 H 0.064 0.936 42 H 0.063 0.937 43 H 0.074 0.926 44 H 0.106 0.894 45 H 0.099 0.901 46 H 0.164 0.836 47 H 0.103 0.897 48 H 0.096 0.904 49 H 0.092 0.908 50 H 0.089 0.911 51 H 0.093 0.907 52 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.937 5.869 15.743 19.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.072 3.928 3 H 0.075 0.925 4 N -0.329 5.329 5 C -0.317 4.317 6 H 0.075 0.925 7 C -0.204 4.204 8 N -0.585 5.585 9 Si 0.725 3.275 10 H -0.223 1.223 11 H -0.226 1.226 12 H -0.216 1.216 13 C 0.048 3.952 14 H 0.082 0.918 15 C -0.167 4.167 16 C -0.156 4.156 17 C -0.172 4.172 18 C -0.012 4.012 19 N -0.359 5.359 20 C 0.234 3.766 21 O -0.258 6.258 22 C -0.003 4.003 23 N -0.141 5.141 24 C -0.101 4.101 25 C -0.221 4.221 26 C -0.085 4.085 27 C -0.215 4.215 28 C -0.216 4.216 29 C -0.155 4.155 30 N -0.027 5.027 31 H 0.061 0.939 32 H 0.053 0.947 33 H 0.075 0.925 34 H 0.210 0.790 35 H 0.055 0.945 36 H 0.082 0.918 37 H 0.093 0.907 38 H 0.081 0.919 39 H 0.078 0.922 40 H 0.087 0.913 41 H 0.083 0.917 42 H 0.081 0.919 43 H 0.092 0.908 44 H 0.124 0.876 45 H 0.117 0.883 46 H 0.181 0.819 47 H 0.122 0.878 48 H 0.114 0.886 49 H 0.110 0.890 50 H 0.108 0.892 51 H 0.111 0.889 52 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges 7.735 5.203 15.179 17.813 hybrid contribution 0.734 0.759 -0.852 1.357 sum 8.468 5.962 14.327 17.678 Atomic orbital electron populations 1.22560 0.99940 1.00084 1.00316 1.20408 0.90404 0.96764 0.85196 0.92506 1.42284 1.71616 1.17166 1.01805 1.18827 1.30873 0.97894 0.84133 0.92503 1.24401 1.02540 0.96728 0.96741 1.69612 1.48603 1.13009 1.27311 0.86397 0.77231 0.78072 0.85802 1.22264 1.22573 1.21626 1.21471 0.78584 0.99490 0.95666 0.91842 1.21994 1.00103 1.00502 0.94065 1.21503 0.95163 1.00936 0.97976 1.21913 0.96404 1.01326 0.97539 1.21574 0.95976 0.98682 0.85003 1.47783 1.07058 1.62765 1.18255 1.20265 0.88387 0.84321 0.83585 1.91247 1.67049 1.37792 1.29671 1.21435 0.95226 0.99070 0.84610 1.48103 1.35961 1.24313 1.05702 1.21980 0.97042 0.92511 0.98582 1.19164 1.08205 1.02696 0.92013 1.20103 0.98226 0.97200 0.92979 1.22949 1.01481 1.01120 0.95979 1.22992 0.92288 1.01389 1.04974 1.23715 0.96891 0.94902 0.99953 1.78060 1.17782 1.21634 0.85195 0.93943 0.94681 0.92492 0.79007 0.94461 0.91764 0.90742 0.91932 0.92159 0.91307 0.91725 0.91858 0.90799 0.87633 0.88324 0.81891 0.87846 0.88599 0.88998 0.89206 0.88883 0.81242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.19 8.67 37.16 0.32 -2.87 16 2 C 0.18 3.77 1.78 -67.94 -0.12 3.65 16 3 H 0.06 1.32 6.47 -51.92 -0.34 0.99 16 4 N -0.69 -17.78 3.05 -53.43 -0.16 -17.94 16 5 C -0.19 -5.45 8.10 -15.06 -0.12 -5.57 16 6 H 0.06 1.72 7.83 -52.49 -0.41 1.31 16 7 C -0.01 -0.30 5.50 -17.43 -0.10 -0.40 16 8 N -0.93 -29.69 13.06 55.49 0.72 -28.97 16 9 Si 0.89 24.57 29.55 -169.99 -5.02 19.54 16 10 H -0.29 -8.16 7.11 56.52 0.40 -7.76 16 11 H -0.30 -8.26 7.11 56.52 0.40 -7.86 16 12 H -0.29 -7.85 7.11 56.52 0.40 -7.44 16 13 C 0.15 2.46 2.56 -67.60 -0.17 2.29 16 14 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 15 C -0.13 -1.61 4.64 -26.61 -0.12 -1.73 16 16 C -0.12 -1.16 5.88 -26.69 -0.16 -1.31 16 17 C -0.13 -1.18 6.08 -26.61 -0.16 -1.34 16 18 C 0.11 1.17 6.33 -3.70 -0.02 1.14 16 19 N -0.62 -9.40 2.97 -165.22 -0.49 -9.89 16 20 C 0.45 8.32 7.38 -10.98 -0.08 8.24 16 21 O -0.39 -9.34 8.55 5.56 0.05 -9.29 16 22 C 0.12 1.81 5.40 -5.19 -0.03 1.78 16 23 N -0.36 -6.42 3.39 -62.54 -0.21 -6.63 16 24 C 0.04 0.66 11.36 -17.22 -0.20 0.46 16 25 C -0.21 -3.36 5.76 -105.05 -0.61 -3.96 16 26 C -0.07 -0.84 6.25 -91.77 -0.57 -1.41 16 27 C -0.18 -2.17 10.02 -26.73 -0.27 -2.44 16 28 C -0.18 -2.03 10.23 -26.73 -0.27 -2.30 16 29 C 0.03 0.66 11.35 -17.37 -0.20 0.47 16 30 N -0.21 -4.70 11.66 30.62 0.36 -4.34 16 31 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.03 0.55 6.82 -51.93 -0.35 0.19 16 33 H 0.06 1.21 7.88 -51.93 -0.41 0.80 16 34 H 0.38 10.58 7.70 -40.82 -0.31 10.27 16 35 H 0.25 7.74 8.31 -40.82 -0.34 7.40 16 36 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.07 0.90 6.83 -51.93 -0.35 0.55 16 38 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 42 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 43 H 0.07 0.61 5.96 -51.93 -0.31 0.30 16 44 H 0.11 1.07 7.38 -51.93 -0.38 0.69 16 45 H 0.10 1.37 8.12 -51.93 -0.42 0.94 16 46 H 0.16 1.74 8.06 -52.48 -0.42 1.31 16 47 H 0.10 1.14 8.14 -51.93 -0.42 0.72 16 48 H 0.10 1.28 6.98 -51.93 -0.36 0.92 16 49 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 50 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 51 H 0.09 1.13 8.14 -51.93 -0.42 0.70 16 52 H 0.17 3.21 7.19 -52.49 -0.38 2.83 16 LS Contribution 404.11 15.07 6.09 6.09 Total: -1.00 -36.52 404.11 -10.21 -46.74 By element: Atomic # 1 Polarization: 18.65 SS G_CDS: -8.66 Total: 9.99 kcal Atomic # 6 Polarization: -2.42 SS G_CDS: -2.88 Total: -5.30 kcal Atomic # 7 Polarization: -67.98 SS G_CDS: 0.22 Total: -67.77 kcal Atomic # 8 Polarization: -9.34 SS G_CDS: 0.05 Total: -9.29 kcal Atomic # 14 Polarization: 24.57 SS G_CDS: -5.02 Total: 19.54 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -36.52 -10.21 -46.74 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266001530.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 182.488 kcal (2) G-P(sol) polarization free energy of solvation -36.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 145.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.738 kcal (6) G-S(sol) free energy of system = (1) + (5) 135.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds