Wall clock time and date at job start Wed Apr 1 2020 05:14:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09009 * 109.47291 * 2 1 4 4 N 1.46492 * 109.47580 * 239.99498 * 2 1 3 5 5 C 1.36944 * 120.00127 * 74.13995 * 4 2 1 6 6 H 1.07996 * 119.99610 * 359.97438 * 5 4 2 7 7 C 1.38809 * 120.00054 * 180.02562 * 5 4 2 8 8 N 1.31613 * 120.00120 * 359.97438 * 7 5 4 9 9 Si 1.86802 * 119.99790 * 179.97438 * 7 5 4 10 10 H 1.48498 * 109.47082 * 89.99921 * 9 7 5 11 11 H 1.48494 * 109.47237 * 209.99779 * 9 7 5 12 12 H 1.48499 * 109.47324 * 329.99976 * 9 7 5 13 13 C 1.52998 * 109.47185 * 119.99320 * 2 1 3 14 14 H 1.08999 * 109.58706 * 67.05299 * 13 2 1 15 15 C 1.53195 * 109.70687 * 306.69925 * 13 2 1 16 16 C 1.53033 * 109.31677 * 185.50295 * 15 13 2 17 17 C 1.53043 * 109.53998 * 61.36353 * 16 15 13 18 18 C 1.53195 * 109.31303 * 298.63737 * 17 16 15 19 19 N 1.46925 * 109.59043 * 187.33639 * 13 2 1 20 20 C 1.34770 * 120.63059 * 353.56248 * 19 13 2 21 21 O 1.21279 * 119.99861 * 5.67337 * 20 19 13 22 22 C 1.50708 * 119.99969 * 185.67084 * 20 19 13 23 23 N 1.46501 * 109.46769 * 180.02562 * 22 20 19 24 24 C 1.34943 * 126.03703 * 125.00273 * 23 22 20 25 25 C 1.35318 * 107.74735 * 179.97438 * 24 23 22 26 26 C 1.50701 * 126.03624 * 180.02562 * 25 24 23 27 27 C 1.53006 * 117.49393 * 188.61894 * 26 25 24 28 28 C 1.53000 * 117.49958 * 119.99999 * 26 25 24 29 29 C 1.39868 * 107.92052 * 359.97438 * 25 24 23 30 30 N 1.30838 * 108.19977 * 359.73944 * 29 25 24 31 31 H 1.08992 * 109.47133 * 185.61449 * 1 2 3 32 32 H 1.08999 * 109.47056 * 305.61673 * 1 2 3 33 33 H 1.09003 * 109.46597 * 65.61416 * 1 2 3 34 34 H 0.97004 * 120.00720 * 254.13690 * 4 2 1 35 35 H 0.97010 * 120.00044 * 179.97438 * 8 7 5 36 36 H 1.08999 * 109.49402 * 305.45773 * 15 13 2 37 37 H 1.09003 * 109.49462 * 65.54934 * 15 13 2 38 38 H 1.09006 * 109.46231 * 301.34603 * 16 15 13 39 39 H 1.08992 * 109.46509 * 181.38685 * 16 15 13 40 40 H 1.08998 * 109.50085 * 178.68185 * 17 16 15 41 41 H 1.09006 * 109.52137 * 58.59958 * 17 16 15 42 42 H 1.08993 * 109.58370 * 294.84495 * 18 17 16 43 43 H 1.08995 * 109.58483 * 174.41713 * 18 17 16 44 44 H 1.08994 * 109.47283 * 299.99740 * 22 20 19 45 45 H 1.08998 * 109.46914 * 60.00224 * 22 20 19 46 46 H 1.08003 * 126.12620 * 359.97438 * 24 23 22 47 47 H 1.09002 * 115.55432 * 334.32358 * 26 25 24 48 48 H 1.08993 * 117.49978 * 0.02562 * 27 26 25 49 49 H 1.09005 * 117.49398 * 145.01999 * 27 26 25 50 50 H 1.08999 * 117.49712 * 214.97371 * 28 26 25 51 51 H 1.08997 * 117.49686 * 359.97438 * 28 26 25 52 52 H 1.07995 * 125.89651 * 180.02562 * 29 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0184 -0.6907 -1.1960 5 6 1.9411 -0.0796 -2.4191 6 1 1.5197 0.9113 -2.5020 7 6 2.4034 -0.7343 -3.5525 8 7 2.9165 -1.9421 -3.4515 9 14 2.2974 0.0990 -5.2210 10 1 3.5390 0.8757 -5.4662 11 1 2.1404 -0.9306 -6.2794 12 1 1.1283 1.0144 -5.2437 13 6 2.0400 -0.7211 1.2493 14 1 1.7843 -1.7790 1.1905 15 6 1.3996 -0.1067 2.4980 16 6 2.0169 -0.7396 3.7471 17 6 3.5186 -0.4466 3.7805 18 6 4.1831 -1.0649 2.5464 19 7 3.4985 -0.5714 1.3436 20 6 4.1953 0.0079 0.3459 21 8 3.6104 0.5035 -0.5939 22 6 5.7011 0.0399 0.3982 23 7 6.2166 0.7194 -0.7929 24 6 7.0499 1.7808 -0.8032 25 6 7.2869 2.1066 -2.0950 26 6 8.1644 3.2323 -2.5787 27 6 8.1381 3.5559 -4.0739 28 6 9.3594 2.8671 -3.4617 29 6 6.5746 1.2134 -2.9018 30 7 5.9374 0.3777 -2.1224 31 1 -0.3633 -1.0227 0.1005 32 1 -0.3633 0.5985 0.8354 33 1 -0.3632 0.4243 -0.9360 34 1 2.3966 -1.5808 -1.1217 35 1 3.2393 -2.3997 -4.2436 36 1 1.5799 0.9682 2.5078 37 1 0.3262 -0.2959 2.4869 38 1 1.8578 -1.8178 3.7244 39 1 1.5456 -0.3220 4.6367 40 1 3.9535 -0.8777 4.6823 41 1 3.6795 0.6315 3.7786 42 1 4.1021 -2.1508 2.5934 43 1 5.2335 -0.7757 2.5136 44 1 6.0224 0.5774 1.2903 45 1 6.0852 -0.9797 0.4301 46 1 7.4550 2.2807 0.0643 47 1 8.2867 4.0645 -1.8854 48 1 7.4858 2.9551 -4.7075 49 1 8.2428 4.6013 -4.3644 50 1 10.2676 3.4593 -3.3495 51 1 9.5111 1.8127 -3.6923 52 1 6.5576 1.2109 -3.9816 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001266001530.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:14:53 Heat of formation + Delta-G solvation = 112.201194 kcal Electronic energy + Delta-G solvation = -32707.665292 eV Core-core repulsion = 28711.402583 eV Total energy + Delta-G solvation = -3996.262709 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -42.17755 -41.26824 -38.23808 -37.71224 -36.92883 -34.36184 -33.75699 -33.41489 -31.44972 -30.92772 -29.43867 -28.51616 -26.15269 -25.63204 -24.11866 -23.74098 -23.19507 -22.50534 -21.46911 -21.38689 -20.74867 -19.84975 -18.74135 -17.91350 -17.66389 -16.76498 -16.70734 -16.37506 -16.02189 -15.61134 -15.58088 -15.42232 -15.18313 -14.93715 -14.80653 -14.52765 -14.20205 -14.08943 -13.88341 -13.56884 -13.53828 -13.46475 -13.14214 -12.99230 -12.82841 -12.73811 -12.54956 -12.41890 -12.31018 -12.13469 -11.90362 -11.67820 -11.66849 -11.58363 -11.35194 -11.25899 -11.16210 -11.01599 -10.72912 -10.40750 -9.65958 -9.33648 -9.00029 -8.43362 -7.71649 -4.86220 1.08749 1.36386 1.42042 1.45233 1.66907 1.89723 2.04715 2.31966 2.66853 3.20770 3.55335 3.64959 3.68660 3.88157 3.92888 4.01306 4.04691 4.09039 4.12749 4.17428 4.22713 4.27545 4.32421 4.35310 4.40529 4.44142 4.57979 4.68247 4.74929 4.79592 4.85078 4.85634 4.89608 4.96373 5.07924 5.08640 5.10185 5.18213 5.18881 5.22525 5.30515 5.34385 5.43184 5.44262 5.49967 5.59484 5.65012 5.75953 5.96322 6.26689 6.48288 6.75335 6.95994 7.56138 7.71522 8.33401 8.56012 9.53049 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.008830 B = 0.004864 C = 0.003398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3170.423443 B = 5754.632583 C = 8237.333532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.182 3.818 3 H 0.031 0.969 4 N -0.690 5.690 5 C -0.160 4.160 6 H 0.040 0.960 7 C -0.066 4.066 8 N -0.963 5.963 9 Si 0.937 3.063 10 H -0.304 1.304 11 H -0.299 1.299 12 H -0.282 1.282 13 C 0.156 3.844 14 H 0.053 0.947 15 C -0.119 4.119 16 C -0.115 4.115 17 C -0.126 4.126 18 C 0.102 3.898 19 N -0.616 5.616 20 C 0.448 3.552 21 O -0.464 6.464 22 C 0.120 3.880 23 N -0.362 5.362 24 C 0.058 3.942 25 C -0.217 4.217 26 C -0.071 4.071 27 C -0.189 4.189 28 C -0.163 4.163 29 C 0.011 3.989 30 N -0.284 5.284 31 H 0.045 0.955 32 H 0.071 0.929 33 H 0.025 0.975 34 H 0.362 0.638 35 H 0.235 0.765 36 H 0.059 0.941 37 H 0.080 0.920 38 H 0.065 0.935 39 H 0.081 0.919 40 H 0.100 0.900 41 H 0.065 0.935 42 H 0.068 0.932 43 H 0.102 0.898 44 H 0.164 0.836 45 H 0.108 0.892 46 H 0.218 0.782 47 H 0.131 0.869 48 H 0.071 0.929 49 H 0.112 0.888 50 H 0.119 0.881 51 H 0.078 0.922 52 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.462 7.261 20.112 23.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.074 3.926 3 H 0.049 0.951 4 N -0.329 5.329 5 C -0.294 4.294 6 H 0.058 0.942 7 C -0.257 4.257 8 N -0.617 5.617 9 Si 0.771 3.229 10 H -0.233 1.233 11 H -0.226 1.226 12 H -0.208 1.208 13 C 0.052 3.948 14 H 0.071 0.929 15 C -0.158 4.158 16 C -0.153 4.153 17 C -0.164 4.164 18 C -0.020 4.020 19 N -0.354 5.354 20 C 0.231 3.769 21 O -0.332 6.332 22 C -0.004 4.004 23 N -0.145 5.145 24 C -0.087 4.087 25 C -0.229 4.229 26 C -0.090 4.090 27 C -0.226 4.226 28 C -0.200 4.200 29 C -0.176 4.176 30 N -0.104 5.104 31 H 0.064 0.936 32 H 0.090 0.910 33 H 0.044 0.956 34 H 0.193 0.807 35 H 0.044 0.956 36 H 0.077 0.923 37 H 0.098 0.902 38 H 0.083 0.917 39 H 0.100 0.900 40 H 0.119 0.881 41 H 0.084 0.916 42 H 0.086 0.914 43 H 0.120 0.880 44 H 0.181 0.819 45 H 0.126 0.874 46 H 0.234 0.766 47 H 0.149 0.851 48 H 0.089 0.911 49 H 0.131 0.869 50 H 0.137 0.863 51 H 0.096 0.904 52 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 9.237 6.605 19.622 22.671 hybrid contribution 0.261 0.371 -2.049 2.098 sum 9.499 6.976 17.573 21.159 Atomic orbital electron populations 1.22413 0.98548 1.00722 1.00198 1.20473 0.91091 0.95512 0.85514 0.95122 1.42280 1.71753 1.16487 1.02369 1.18852 1.28166 0.96599 0.85742 0.94185 1.24861 1.04102 0.97581 0.99185 1.69737 1.50802 1.14142 1.27040 0.85627 0.76831 0.77270 0.83186 1.23334 1.22599 1.20753 1.21302 0.79946 0.98377 0.95216 0.92908 1.21920 1.00345 1.00042 0.93461 1.21512 0.95962 1.00945 0.96868 1.21893 0.95469 1.01444 0.97610 1.21976 0.97330 0.99146 0.83540 1.47925 1.06680 1.61609 1.19199 1.21015 0.90082 0.82724 0.83067 1.91221 1.68633 1.41288 1.32075 1.21752 0.92527 1.00617 0.85526 1.48278 1.36233 1.25132 1.04846 1.22790 0.95111 0.90925 0.99839 1.19530 1.08285 1.03020 0.92058 1.20249 0.98351 0.96948 0.93500 1.22993 1.01969 1.02028 0.95645 1.23015 0.92777 1.00929 1.03317 1.23780 0.97822 0.96187 0.99768 1.77928 1.20352 1.24181 0.87927 0.93600 0.90982 0.95582 0.80667 0.95556 0.92258 0.90196 0.91655 0.90017 0.88146 0.91632 0.91353 0.87994 0.81911 0.87387 0.76562 0.85108 0.91082 0.86947 0.86311 0.90372 0.82742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -6.06 8.67 71.98 0.62 -5.44 16 2 C 0.18 7.74 1.78 44.99 0.08 7.82 16 3 H 0.03 1.49 6.47 -2.38 -0.02 1.48 16 4 N -0.69 -37.33 3.05 -322.96 -0.99 -38.32 16 5 C -0.16 -9.92 8.10 84.03 0.68 -9.23 16 6 H 0.04 2.57 7.83 -2.91 -0.02 2.54 16 7 C -0.07 -4.25 5.50 84.86 0.47 -3.78 16 8 N -0.96 -64.41 13.06 21.65 0.28 -64.13 16 9 Si 0.94 53.24 29.55 68.60 2.03 55.27 16 10 H -0.30 -17.57 7.11 99.48 0.71 -16.87 16 11 H -0.30 -16.82 7.11 99.48 0.71 -16.11 16 12 H -0.28 -15.38 7.11 99.48 0.71 -14.67 16 13 C 0.16 4.94 2.56 44.98 0.11 5.06 16 14 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 15 C -0.12 -2.69 4.64 30.67 0.14 -2.55 16 16 C -0.12 -1.77 5.88 30.62 0.18 -1.59 16 17 C -0.13 -1.60 6.08 30.67 0.19 -1.42 16 18 C 0.10 1.74 6.33 86.36 0.55 2.28 16 19 N -0.62 -17.74 2.97 -795.02 -2.36 -20.11 16 20 C 0.45 16.27 7.38 87.66 0.65 16.91 16 21 O -0.46 -22.74 8.55 -3.03 -0.03 -22.76 16 22 C 0.12 3.30 5.40 85.64 0.46 3.76 16 23 N -0.36 -12.75 3.39 -351.79 -1.19 -13.94 16 24 C 0.06 1.62 11.36 83.54 0.95 2.57 16 25 C -0.22 -6.91 5.76 -20.14 -0.12 -7.02 16 26 C -0.07 -1.70 6.25 -11.54 -0.07 -1.78 16 27 C -0.19 -4.54 10.02 30.60 0.31 -4.23 16 28 C -0.16 -3.44 10.23 30.59 0.31 -3.13 16 29 C 0.01 0.48 11.35 85.24 0.97 1.45 16 30 N -0.28 -13.47 11.66 -57.03 -0.66 -14.14 16 31 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 32 H 0.07 2.19 6.82 -2.39 -0.02 2.17 16 33 H 0.02 1.12 7.88 -2.39 -0.02 1.10 16 34 H 0.36 21.35 7.70 -92.71 -0.71 20.63 16 35 H 0.24 15.66 8.31 -92.70 -0.77 14.89 16 36 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 37 H 0.08 1.71 6.83 -2.39 -0.02 1.70 16 38 H 0.06 1.01 8.14 -2.38 -0.02 0.99 16 39 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 40 H 0.10 0.75 8.14 -2.39 -0.02 0.73 16 41 H 0.06 0.87 8.14 -2.38 -0.02 0.86 16 42 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 43 H 0.10 1.17 5.96 -2.39 -0.01 1.16 16 44 H 0.16 2.47 7.38 -2.39 -0.02 2.45 16 45 H 0.11 2.77 8.12 -2.39 -0.02 2.75 16 46 H 0.22 3.44 8.06 -2.91 -0.02 3.42 16 47 H 0.13 2.41 8.14 -2.39 -0.02 2.39 16 48 H 0.07 2.04 6.98 -2.39 -0.02 2.03 16 49 H 0.11 2.19 8.14 -2.38 -0.02 2.17 16 50 H 0.12 1.83 8.14 -2.39 -0.02 1.81 16 51 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 52 H 0.16 6.56 7.19 -2.91 -0.02 6.54 16 Total: -1.00 -89.24 404.11 3.76 -85.48 By element: Atomic # 1 Polarization: 32.77 SS G_CDS: 0.20 Total: 32.97 kcal Atomic # 6 Polarization: -6.81 SS G_CDS: 6.48 Total: -0.33 kcal Atomic # 7 Polarization: -145.71 SS G_CDS: -4.93 Total: -150.64 kcal Atomic # 8 Polarization: -22.74 SS G_CDS: -0.03 Total: -22.76 kcal Atomic # 14 Polarization: 53.24 SS G_CDS: 2.03 Total: 55.27 kcal Total: -89.24 3.76 -85.48 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266001530.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 197.685 kcal (2) G-P(sol) polarization free energy of solvation -89.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 108.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.484 kcal (6) G-S(sol) free energy of system = (1) + (5) 112.201 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds