Wall clock time and date at job start Wed Apr 1 2020 05:15:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09006 * 109.47370 * 2 1 4 4 N 1.46493 * 109.47727 * 239.99760 * 2 1 3 5 5 C 1.36936 * 119.99905 * 84.99618 * 4 2 1 6 6 H 1.07992 * 120.00246 * 0.02562 * 5 4 2 7 7 C 1.38819 * 120.00164 * 180.02562 * 5 4 2 8 8 N 1.31619 * 119.99784 * 0.02562 * 7 5 4 9 9 Si 1.86791 * 120.00213 * 180.02562 * 7 5 4 10 10 H 1.48502 * 109.47171 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.47563 * 119.99889 * 9 7 5 12 12 H 1.48497 * 109.47240 * 240.00075 * 9 7 5 13 13 C 1.53002 * 109.47040 * 119.99568 * 2 1 3 14 14 H 1.09001 * 109.58858 * 302.43888 * 13 2 1 15 15 C 1.53190 * 109.58552 * 62.72091 * 13 2 1 16 16 C 1.53036 * 109.31615 * 174.42315 * 15 13 2 17 17 C 1.53044 * 109.53691 * 298.63696 * 16 15 13 18 18 C 1.53186 * 109.31272 * 61.36176 * 17 16 15 19 19 N 1.46928 * 109.58821 * 182.15345 * 13 2 1 20 20 C 1.34774 * 120.63041 * 6.60673 * 19 13 2 21 21 O 1.21277 * 119.99796 * 5.93303 * 20 19 13 22 22 C 1.50695 * 119.99940 * 185.93574 * 20 19 13 23 23 N 1.46497 * 109.47205 * 180.02562 * 22 20 19 24 24 C 1.34945 * 126.04297 * 125.00130 * 23 22 20 25 25 C 1.35312 * 107.75068 * 179.97438 * 24 23 22 26 26 C 1.50702 * 126.04161 * 179.97438 * 25 24 23 27 27 C 1.53002 * 117.49971 * 188.62239 * 26 25 24 28 28 C 1.53004 * 60.00092 * 252.51423 * 27 26 25 29 29 C 1.39873 * 107.92052 * 0.02562 * 25 24 23 30 30 N 1.30844 * 108.19893 * 359.73776 * 29 25 24 31 31 H 1.09004 * 109.46760 * 54.95667 * 1 2 3 32 32 H 1.09000 * 109.47240 * 174.95593 * 1 2 3 33 33 H 1.09006 * 109.47413 * 294.96272 * 1 2 3 34 34 H 0.97005 * 120.00019 * 265.00739 * 4 2 1 35 35 H 0.96997 * 120.00110 * 179.97438 * 8 7 5 36 36 H 1.09003 * 109.49758 * 294.37926 * 15 13 2 37 37 H 1.09000 * 109.49978 * 54.46895 * 15 13 2 38 38 H 1.08999 * 109.46214 * 58.65704 * 16 15 13 39 39 H 1.09000 * 109.46379 * 178.62006 * 16 15 13 40 40 H 1.09004 * 109.49824 * 181.31439 * 17 16 15 41 41 H 1.08998 * 109.49542 * 301.40985 * 17 16 15 42 42 H 1.09007 * 109.58508 * 65.15724 * 18 17 16 43 43 H 1.09004 * 109.58725 * 185.43083 * 18 17 16 44 44 H 1.09005 * 109.46885 * 300.00014 * 22 20 19 45 45 H 1.09001 * 109.47264 * 59.99868 * 22 20 19 46 46 H 1.08002 * 126.12156 * 359.95555 * 24 23 22 47 47 H 1.08993 * 115.54930 * 334.33812 * 26 25 24 48 48 H 1.08995 * 117.49707 * 0.02562 * 27 26 25 49 49 H 1.08999 * 117.49740 * 145.02213 * 27 26 25 50 50 H 1.09000 * 117.49703 * 252.51273 * 28 27 26 51 51 H 1.09007 * 117.49492 * 107.48804 * 28 27 26 52 52 H 1.07995 * 125.90120 * 180.02562 * 29 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6906 -1.1960 5 6 2.1492 -0.0075 -2.3756 6 1 1.8926 1.0404 -2.4241 7 6 2.6115 -0.6620 -3.5092 8 7 2.9237 -1.9393 -3.4502 9 14 2.7906 0.2699 -5.1181 10 1 2.3765 1.6823 -4.9207 11 1 4.2075 0.2263 -5.5605 12 1 1.9296 -0.3579 -6.1523 13 6 2.0399 -0.7212 1.2493 14 1 1.6424 -0.2346 2.1400 15 6 1.5874 -2.1844 1.2183 16 6 2.2151 -2.9334 2.3960 17 6 3.7400 -2.8967 2.2717 18 6 4.2169 -1.4416 2.3147 19 7 3.5083 -0.6778 1.2782 20 6 4.1919 0.0456 0.3695 21 8 3.5961 0.7534 -0.4146 22 6 5.6966 -0.0253 0.3276 23 7 6.1970 0.8457 -0.7388 24 6 7.1036 1.8350 -0.5961 25 6 7.2955 2.3971 -1.8119 26 6 8.2252 3.5418 -2.1227 27 6 8.1439 4.1583 -3.5207 28 6 9.3429 3.2888 -3.1365 29 6 6.4778 1.7288 -2.7290 30 7 5.8228 0.7951 -2.0878 31 1 -0.3633 0.5901 -0.8414 32 1 -0.3634 -1.0237 -0.0904 33 1 -0.3634 0.4337 0.9317 34 1 2.2490 -1.6318 -1.1524 35 1 3.2464 -2.3967 -4.2423 36 1 0.5011 -2.2310 1.2948 37 1 1.9066 -2.6442 0.2830 38 1 1.9153 -2.4582 3.3299 39 1 1.8752 -3.9691 2.3903 40 1 4.1859 -3.4502 3.0981 41 1 4.0390 -3.3497 1.3265 42 1 3.9990 -1.0144 3.2936 43 1 5.2905 -1.4033 2.1302 44 1 6.1025 0.3027 1.2846 45 1 6.0068 -1.0522 0.1341 46 1 7.5888 2.1262 0.3238 47 1 8.4432 4.2099 -1.2896 48 1 7.4178 3.7362 -4.2154 49 1 8.3083 5.2323 -3.6074 50 1 10.2960 3.7909 -2.9705 51 1 9.4056 2.2944 -3.5787 52 1 6.4037 1.9431 -3.7849 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001266001537.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:15:28 Heat of formation + Delta-G solvation = 129.925669 kcal Electronic energy + Delta-G solvation = -32921.878438 eV Core-core repulsion = 28926.384320 eV Total energy + Delta-G solvation = -3995.494118 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -40.90756 -39.98649 -37.10823 -36.62136 -35.24326 -32.76832 -32.28673 -31.96622 -29.68725 -29.58566 -27.95379 -27.33100 -24.63139 -23.88000 -23.01879 -22.61088 -22.25641 -21.21401 -20.55179 -19.82632 -19.33083 -18.31352 -16.88542 -16.67133 -16.40735 -15.59271 -15.24845 -15.11899 -14.47991 -14.24187 -14.16360 -13.97898 -13.88216 -13.75526 -13.45850 -13.34588 -12.78767 -12.71848 -12.44610 -12.27493 -12.13477 -12.00486 -11.81364 -11.44439 -11.40780 -11.37331 -11.09624 -10.87354 -10.65582 -10.61134 -10.56326 -10.44405 -10.37521 -10.27326 -10.02513 -9.77643 -9.67333 -9.24145 -9.00186 -8.60453 -8.15512 -7.93978 -7.76708 -6.47831 -5.36986 -2.57747 2.30560 2.82175 3.21602 3.26693 3.55622 3.66869 3.72445 3.74299 4.17116 4.65702 4.76769 4.87427 4.93955 4.96273 5.02036 5.05348 5.10095 5.13390 5.19983 5.33933 5.36029 5.47913 5.50448 5.55589 5.59097 5.68617 5.73036 5.80423 5.85442 5.97892 5.99983 6.02231 6.05432 6.09328 6.17830 6.24052 6.26405 6.30689 6.33776 6.47196 6.50380 6.56092 6.62500 6.88415 7.04397 7.09673 7.13638 7.38419 7.44555 7.96370 8.14055 8.30281 8.80819 8.99162 9.94575 10.47915 10.84280 11.88060 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.009944 B = 0.004695 C = 0.003565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2815.059481 B = 5961.921697 C = 7851.249520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.166 3.834 3 H 0.083 0.917 4 N -0.705 5.705 5 C -0.171 4.171 6 H 0.059 0.941 7 C -0.013 4.013 8 N -0.945 5.945 9 Si 0.892 3.108 10 H -0.287 1.287 11 H -0.296 1.296 12 H -0.303 1.303 13 C 0.150 3.850 14 H 0.060 0.940 15 C -0.133 4.133 16 C -0.116 4.116 17 C -0.136 4.136 18 C 0.112 3.888 19 N -0.615 5.615 20 C 0.488 3.512 21 O -0.425 6.425 22 C 0.120 3.880 23 N -0.358 5.358 24 C 0.044 3.956 25 C -0.208 4.208 26 C -0.066 4.066 27 C -0.178 4.178 28 C -0.179 4.179 29 C 0.029 3.971 30 N -0.205 5.205 31 H 0.051 0.949 32 H 0.044 0.956 33 H 0.030 0.970 34 H 0.377 0.623 35 H 0.244 0.756 36 H 0.070 0.930 37 H 0.079 0.921 38 H 0.057 0.943 39 H 0.060 0.940 40 H 0.067 0.933 41 H 0.070 0.930 42 H 0.062 0.938 43 H 0.073 0.927 44 H 0.107 0.893 45 H 0.103 0.897 46 H 0.164 0.836 47 H 0.104 0.896 48 H 0.095 0.905 49 H 0.092 0.908 50 H 0.090 0.910 51 H 0.093 0.907 52 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.213 3.807 14.990 18.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.056 3.944 3 H 0.100 0.900 4 N -0.347 5.347 5 C -0.303 4.303 6 H 0.077 0.923 7 C -0.206 4.206 8 N -0.597 5.597 9 Si 0.727 3.273 10 H -0.212 1.212 11 H -0.224 1.224 12 H -0.232 1.232 13 C 0.047 3.953 14 H 0.078 0.922 15 C -0.171 4.171 16 C -0.154 4.154 17 C -0.175 4.175 18 C -0.012 4.012 19 N -0.353 5.353 20 C 0.272 3.728 21 O -0.292 6.292 22 C -0.005 4.005 23 N -0.140 5.140 24 C -0.101 4.101 25 C -0.220 4.220 26 C -0.085 4.085 27 C -0.215 4.215 28 C -0.217 4.217 29 C -0.159 4.159 30 N -0.024 5.024 31 H 0.070 0.930 32 H 0.064 0.936 33 H 0.049 0.951 34 H 0.212 0.788 35 H 0.054 0.946 36 H 0.089 0.911 37 H 0.098 0.902 38 H 0.075 0.925 39 H 0.078 0.922 40 H 0.085 0.915 41 H 0.089 0.911 42 H 0.080 0.920 43 H 0.092 0.908 44 H 0.125 0.875 45 H 0.121 0.879 46 H 0.182 0.818 47 H 0.122 0.878 48 H 0.114 0.886 49 H 0.110 0.890 50 H 0.108 0.892 51 H 0.111 0.889 52 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 7.982 3.338 14.407 16.806 hybrid contribution 0.859 0.575 -0.804 1.309 sum 8.841 3.912 13.604 16.689 Atomic orbital electron populations 1.22598 1.00358 1.00758 0.99250 1.20717 0.90238 0.98009 0.85397 0.89966 1.42374 1.77494 1.09595 1.05200 1.18943 1.32389 0.92745 0.86206 0.92293 1.24366 1.03351 0.95665 0.97198 1.69623 1.53715 1.08584 1.27773 0.86275 0.76979 0.78792 0.85279 1.21231 1.22360 1.23185 1.21549 0.78482 0.95853 0.99460 0.92232 1.21987 1.00292 0.95645 0.99187 1.21494 0.94978 1.00347 0.98565 1.21918 0.96756 0.96239 1.02543 1.21594 0.96254 0.91875 0.91458 1.47848 1.06415 1.49779 1.31276 1.20139 0.88381 0.82863 0.81464 1.90950 1.66760 1.36359 1.35097 1.21462 0.95182 0.95593 0.88302 1.48089 1.32039 1.26594 1.07267 1.21992 0.95919 0.92796 0.99404 1.19161 1.06431 1.03475 0.92968 1.20103 0.98293 0.97176 0.92926 1.22947 1.01310 0.98785 0.98501 1.23000 0.93061 1.01369 1.04233 1.23747 0.96347 0.95717 1.00091 1.78122 1.17726 1.20449 0.86066 0.92970 0.93641 0.95098 0.78807 0.94604 0.91129 0.90235 0.92456 0.92153 0.91456 0.91075 0.92005 0.90813 0.87503 0.87890 0.81826 0.87817 0.88629 0.88985 0.89178 0.88865 0.81277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.20 9.07 37.15 0.34 -2.86 16 2 C 0.17 3.44 1.89 -67.94 -0.13 3.31 16 3 H 0.08 1.92 5.86 -52.23 -0.31 1.61 16 4 N -0.70 -17.76 3.49 -53.43 -0.19 -17.95 16 5 C -0.17 -4.97 8.11 -15.06 -0.12 -5.10 16 6 H 0.06 1.81 7.83 -52.49 -0.41 1.39 16 7 C -0.01 -0.38 5.50 -17.43 -0.10 -0.48 16 8 N -0.94 -29.79 13.06 55.49 0.72 -29.06 16 9 Si 0.89 24.78 29.55 -169.99 -5.02 19.75 16 10 H -0.29 -7.87 7.11 56.52 0.40 -7.47 16 11 H -0.30 -8.26 7.11 56.52 0.40 -7.86 16 12 H -0.30 -8.46 7.11 56.52 0.40 -8.06 16 13 C 0.15 2.44 2.74 -67.60 -0.19 2.26 16 14 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 15 C -0.13 -2.01 4.81 -26.61 -0.13 -2.14 16 16 C -0.12 -1.35 5.88 -26.69 -0.16 -1.51 16 17 C -0.14 -1.47 6.08 -26.61 -0.16 -1.64 16 18 C 0.11 1.20 6.34 -3.70 -0.02 1.18 16 19 N -0.61 -9.40 2.97 -165.19 -0.49 -9.89 16 20 C 0.49 8.93 7.14 -10.99 -0.08 8.86 16 21 O -0.43 -9.83 8.89 5.56 0.05 -9.78 16 22 C 0.12 1.79 5.35 -5.20 -0.03 1.77 16 23 N -0.36 -6.36 3.40 -62.55 -0.21 -6.57 16 24 C 0.04 0.65 11.36 -17.23 -0.20 0.45 16 25 C -0.21 -3.28 5.76 -105.05 -0.61 -3.88 16 26 C -0.07 -0.82 6.25 -91.77 -0.57 -1.39 16 27 C -0.18 -2.10 10.02 -26.73 -0.27 -2.37 16 28 C -0.18 -2.00 10.23 -26.73 -0.27 -2.28 16 29 C 0.03 0.57 11.35 -17.36 -0.20 0.37 16 30 N -0.21 -4.59 11.66 30.63 0.36 -4.23 16 31 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 32 H 0.04 0.85 6.91 -51.93 -0.36 0.49 16 33 H 0.03 0.49 8.14 -51.93 -0.42 0.06 16 34 H 0.38 10.14 5.84 -40.82 -0.24 9.90 16 35 H 0.24 7.64 8.31 -40.82 -0.34 7.30 16 36 H 0.07 1.03 6.93 -51.93 -0.36 0.67 16 37 H 0.08 1.50 6.21 -51.93 -0.32 1.18 16 38 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 42 H 0.06 0.56 8.14 -51.92 -0.42 0.13 16 43 H 0.07 0.65 5.95 -51.93 -0.31 0.34 16 44 H 0.11 1.07 7.64 -51.93 -0.40 0.67 16 45 H 0.10 1.50 7.93 -51.93 -0.41 1.08 16 46 H 0.16 1.69 8.06 -52.49 -0.42 1.26 16 47 H 0.10 1.11 8.14 -51.93 -0.42 0.68 16 48 H 0.10 1.23 6.97 -51.93 -0.36 0.86 16 49 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 50 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 51 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 52 H 0.17 3.13 7.19 -52.49 -0.38 2.75 16 LS Contribution 401.56 15.07 6.05 6.05 Total: -1.00 -36.24 401.56 -10.10 -46.34 By element: Atomic # 1 Polarization: 19.27 SS G_CDS: -8.48 Total: 10.79 kcal Atomic # 6 Polarization: -2.56 SS G_CDS: -2.88 Total: -5.44 kcal Atomic # 7 Polarization: -67.90 SS G_CDS: 0.19 Total: -67.70 kcal Atomic # 8 Polarization: -9.83 SS G_CDS: 0.05 Total: -9.78 kcal Atomic # 14 Polarization: 24.78 SS G_CDS: -5.02 Total: 19.75 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -36.24 -10.10 -46.34 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266001537.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 176.263 kcal (2) G-P(sol) polarization free energy of solvation -36.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 140.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.338 kcal (6) G-S(sol) free energy of system = (1) + (5) 129.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds