Wall clock time and date at job start Wed Apr 1 2020 05:15:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09006 * 109.47370 * 2 1 4 4 N 1.46493 * 109.47727 * 239.99760 * 2 1 3 5 5 C 1.36936 * 119.99905 * 84.99618 * 4 2 1 6 6 H 1.07992 * 120.00246 * 0.02562 * 5 4 2 7 7 C 1.38819 * 120.00164 * 180.02562 * 5 4 2 8 8 N 1.31619 * 119.99784 * 0.02562 * 7 5 4 9 9 Si 1.86791 * 120.00213 * 180.02562 * 7 5 4 10 10 H 1.48502 * 109.47171 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.47563 * 119.99889 * 9 7 5 12 12 H 1.48497 * 109.47240 * 240.00075 * 9 7 5 13 13 C 1.53002 * 109.47040 * 119.99568 * 2 1 3 14 14 H 1.09001 * 109.58858 * 302.43888 * 13 2 1 15 15 C 1.53190 * 109.58552 * 62.72091 * 13 2 1 16 16 C 1.53036 * 109.31615 * 174.42315 * 15 13 2 17 17 C 1.53044 * 109.53691 * 298.63696 * 16 15 13 18 18 C 1.53186 * 109.31272 * 61.36176 * 17 16 15 19 19 N 1.46928 * 109.58821 * 182.15345 * 13 2 1 20 20 C 1.34774 * 120.63041 * 6.60673 * 19 13 2 21 21 O 1.21277 * 119.99796 * 5.93303 * 20 19 13 22 22 C 1.50695 * 119.99940 * 185.93574 * 20 19 13 23 23 N 1.46497 * 109.47205 * 180.02562 * 22 20 19 24 24 C 1.34945 * 126.04297 * 125.00130 * 23 22 20 25 25 C 1.35312 * 107.75068 * 179.97438 * 24 23 22 26 26 C 1.50702 * 126.04161 * 179.97438 * 25 24 23 27 27 C 1.53002 * 117.49971 * 188.62239 * 26 25 24 28 28 C 1.53004 * 60.00092 * 252.51423 * 27 26 25 29 29 C 1.39873 * 107.92052 * 0.02562 * 25 24 23 30 30 N 1.30844 * 108.19893 * 359.73776 * 29 25 24 31 31 H 1.09004 * 109.46760 * 54.95667 * 1 2 3 32 32 H 1.09000 * 109.47240 * 174.95593 * 1 2 3 33 33 H 1.09006 * 109.47413 * 294.96272 * 1 2 3 34 34 H 0.97005 * 120.00019 * 265.00739 * 4 2 1 35 35 H 0.96997 * 120.00110 * 179.97438 * 8 7 5 36 36 H 1.09003 * 109.49758 * 294.37926 * 15 13 2 37 37 H 1.09000 * 109.49978 * 54.46895 * 15 13 2 38 38 H 1.08999 * 109.46214 * 58.65704 * 16 15 13 39 39 H 1.09000 * 109.46379 * 178.62006 * 16 15 13 40 40 H 1.09004 * 109.49824 * 181.31439 * 17 16 15 41 41 H 1.08998 * 109.49542 * 301.40985 * 17 16 15 42 42 H 1.09007 * 109.58508 * 65.15724 * 18 17 16 43 43 H 1.09004 * 109.58725 * 185.43083 * 18 17 16 44 44 H 1.09005 * 109.46885 * 300.00014 * 22 20 19 45 45 H 1.09001 * 109.47264 * 59.99868 * 22 20 19 46 46 H 1.08002 * 126.12156 * 359.95555 * 24 23 22 47 47 H 1.08993 * 115.54930 * 334.33812 * 26 25 24 48 48 H 1.08995 * 117.49707 * 0.02562 * 27 26 25 49 49 H 1.08999 * 117.49740 * 145.02213 * 27 26 25 50 50 H 1.09000 * 117.49703 * 252.51273 * 28 27 26 51 51 H 1.09007 * 117.49492 * 107.48804 * 28 27 26 52 52 H 1.07995 * 125.90120 * 180.02562 * 29 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6906 -1.1960 5 6 2.1492 -0.0075 -2.3756 6 1 1.8926 1.0404 -2.4241 7 6 2.6115 -0.6620 -3.5092 8 7 2.9237 -1.9393 -3.4502 9 14 2.7906 0.2699 -5.1181 10 1 2.3765 1.6823 -4.9207 11 1 4.2075 0.2263 -5.5605 12 1 1.9296 -0.3579 -6.1523 13 6 2.0399 -0.7212 1.2493 14 1 1.6424 -0.2346 2.1400 15 6 1.5874 -2.1844 1.2183 16 6 2.2151 -2.9334 2.3960 17 6 3.7400 -2.8967 2.2717 18 6 4.2169 -1.4416 2.3147 19 7 3.5083 -0.6778 1.2782 20 6 4.1919 0.0456 0.3695 21 8 3.5961 0.7534 -0.4146 22 6 5.6966 -0.0253 0.3276 23 7 6.1970 0.8457 -0.7388 24 6 7.1036 1.8350 -0.5961 25 6 7.2955 2.3971 -1.8119 26 6 8.2252 3.5418 -2.1227 27 6 8.1439 4.1583 -3.5207 28 6 9.3429 3.2888 -3.1365 29 6 6.4778 1.7288 -2.7290 30 7 5.8228 0.7951 -2.0878 31 1 -0.3633 0.5901 -0.8414 32 1 -0.3634 -1.0237 -0.0904 33 1 -0.3634 0.4337 0.9317 34 1 2.2490 -1.6318 -1.1524 35 1 3.2464 -2.3967 -4.2423 36 1 0.5011 -2.2310 1.2948 37 1 1.9066 -2.6442 0.2830 38 1 1.9153 -2.4582 3.3299 39 1 1.8752 -3.9691 2.3903 40 1 4.1859 -3.4502 3.0981 41 1 4.0390 -3.3497 1.3265 42 1 3.9990 -1.0144 3.2936 43 1 5.2905 -1.4033 2.1302 44 1 6.1025 0.3027 1.2846 45 1 6.0068 -1.0522 0.1341 46 1 7.5888 2.1262 0.3238 47 1 8.4432 4.2099 -1.2896 48 1 7.4178 3.7362 -4.2154 49 1 8.3083 5.2323 -3.6074 50 1 10.2960 3.7909 -2.9705 51 1 9.4056 2.2944 -3.5787 52 1 6.4037 1.9431 -3.7849 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001266001537.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:15:24 Heat of formation + Delta-G solvation = 106.528951 kcal Electronic energy + Delta-G solvation = -32922.892996 eV Core-core repulsion = 28926.384320 eV Total energy + Delta-G solvation = -3996.508676 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -42.18480 -41.28639 -38.28143 -37.70934 -36.87191 -34.32073 -33.76472 -33.41787 -31.23248 -30.91966 -29.65995 -28.55855 -25.97628 -25.55146 -24.55207 -23.73630 -23.18934 -22.46534 -21.76342 -21.19321 -20.57154 -19.59767 -18.98910 -17.93858 -17.63177 -16.86821 -16.41539 -16.38452 -16.14237 -15.70316 -15.49483 -15.46786 -15.11307 -14.97681 -14.88038 -14.57839 -14.16735 -14.09980 -13.87901 -13.61856 -13.57730 -13.34397 -13.03435 -12.97557 -12.84577 -12.68112 -12.64378 -12.31512 -12.29366 -12.13245 -11.95274 -11.68032 -11.66357 -11.55163 -11.34440 -11.25453 -11.22598 -11.00775 -10.77708 -10.39059 -9.57607 -9.30089 -8.99596 -8.58418 -7.73434 -4.88550 1.09036 1.35473 1.40445 1.45676 1.65494 1.89315 1.96414 2.36450 2.68552 3.21087 3.54067 3.65418 3.69470 3.94006 3.97917 4.01451 4.06630 4.09171 4.13429 4.15714 4.21853 4.27776 4.31405 4.31818 4.40166 4.46787 4.58120 4.67483 4.74288 4.84324 4.85513 4.86504 4.90157 4.97316 5.05385 5.08304 5.11012 5.17259 5.18436 5.28653 5.34445 5.34728 5.44710 5.46493 5.56737 5.62323 5.70550 5.75948 5.97199 6.26540 6.50075 6.74111 6.95975 7.58117 7.69016 8.35156 8.59311 9.52171 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.009944 B = 0.004695 C = 0.003565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2815.059481 B = 5961.921697 C = 7851.249520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.162 3.838 3 H 0.056 0.944 4 N -0.703 5.703 5 C -0.140 4.140 6 H 0.036 0.964 7 C -0.065 4.065 8 N -0.972 5.972 9 Si 0.934 3.066 10 H -0.287 1.287 11 H -0.304 1.304 12 H -0.303 1.303 13 C 0.155 3.845 14 H 0.091 0.909 15 C -0.127 4.127 16 C -0.110 4.110 17 C -0.134 4.134 18 C 0.105 3.895 19 N -0.612 5.612 20 C 0.477 3.523 21 O -0.489 6.489 22 C 0.118 3.882 23 N -0.362 5.362 24 C 0.059 3.941 25 C -0.217 4.217 26 C -0.070 4.070 27 C -0.187 4.187 28 C -0.167 4.167 29 C 0.008 3.992 30 N -0.283 5.283 31 H 0.023 0.977 32 H 0.044 0.956 33 H 0.069 0.931 34 H 0.368 0.632 35 H 0.235 0.765 36 H 0.074 0.926 37 H 0.033 0.967 38 H 0.085 0.915 39 H 0.065 0.935 40 H 0.103 0.897 41 H 0.038 0.962 42 H 0.096 0.904 43 H 0.097 0.903 44 H 0.168 0.832 45 H 0.104 0.896 46 H 0.219 0.781 47 H 0.132 0.868 48 H 0.072 0.928 49 H 0.113 0.887 50 H 0.118 0.882 51 H 0.076 0.924 52 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.857 4.499 19.686 22.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.054 3.946 3 H 0.074 0.926 4 N -0.343 5.343 5 C -0.273 4.273 6 H 0.054 0.946 7 C -0.255 4.255 8 N -0.628 5.628 9 Si 0.769 3.231 10 H -0.212 1.212 11 H -0.233 1.233 12 H -0.231 1.231 13 C 0.051 3.949 14 H 0.108 0.892 15 C -0.165 4.165 16 C -0.148 4.148 17 C -0.172 4.172 18 C -0.017 4.017 19 N -0.350 5.350 20 C 0.262 3.738 21 O -0.360 6.360 22 C -0.006 4.006 23 N -0.145 5.145 24 C -0.085 4.085 25 C -0.228 4.228 26 C -0.089 4.089 27 C -0.224 4.224 28 C -0.204 4.204 29 C -0.179 4.179 30 N -0.103 5.103 31 H 0.042 0.958 32 H 0.063 0.937 33 H 0.088 0.912 34 H 0.201 0.799 35 H 0.044 0.956 36 H 0.092 0.908 37 H 0.052 0.948 38 H 0.103 0.897 39 H 0.084 0.916 40 H 0.121 0.879 41 H 0.057 0.943 42 H 0.114 0.886 43 H 0.115 0.885 44 H 0.185 0.815 45 H 0.121 0.879 46 H 0.236 0.764 47 H 0.150 0.850 48 H 0.091 0.909 49 H 0.131 0.869 50 H 0.136 0.864 51 H 0.094 0.906 52 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 9.612 4.031 19.163 21.814 hybrid contribution 0.317 0.407 -2.118 2.180 sum 9.929 4.438 17.045 20.219 Atomic orbital electron populations 1.22437 0.98933 1.00526 1.00104 1.20794 0.91000 0.96934 0.85878 0.92610 1.42386 1.77292 1.08977 1.05647 1.18855 1.29414 0.91470 0.87566 0.94574 1.24737 1.05199 0.96338 0.99250 1.69728 1.56031 1.09442 1.27573 0.85570 0.76256 0.77940 0.83291 1.21244 1.23307 1.23119 1.21415 0.79579 0.96088 0.97781 0.89152 1.21898 1.00781 0.95002 0.98851 1.21479 0.95288 1.00336 0.97664 1.21919 0.96339 0.96622 1.02329 1.22000 0.97214 0.91127 0.91324 1.47979 1.06120 1.49269 1.31589 1.20828 0.89948 0.82086 0.80924 1.90930 1.68250 1.39233 1.37613 1.21758 0.92990 0.95806 0.90051 1.48253 1.32426 1.27577 1.06214 1.22810 0.94156 0.90704 1.00865 1.19527 1.06417 1.04314 0.92558 1.20246 0.98112 0.96583 0.93953 1.22999 1.01425 1.00028 0.97998 1.23019 0.93842 1.00601 1.02942 1.23828 0.97360 0.96409 1.00283 1.77985 1.20473 1.22820 0.89036 0.95750 0.93666 0.91229 0.79864 0.95577 0.90754 0.94828 0.89668 0.91586 0.87850 0.94265 0.88568 0.88459 0.81502 0.87852 0.76439 0.84996 0.90948 0.86851 0.86369 0.90580 0.82651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -6.03 9.07 71.98 0.65 -5.38 16 2 C 0.16 6.80 1.89 44.99 0.08 6.89 16 3 H 0.06 2.70 5.86 -7.14 -0.04 2.65 16 4 N -0.70 -37.00 3.49 -322.96 -1.13 -38.13 16 5 C -0.14 -8.57 8.11 84.04 0.68 -7.89 16 6 H 0.04 2.36 7.83 -2.91 -0.02 2.33 16 7 C -0.07 -4.15 5.50 84.86 0.47 -3.68 16 8 N -0.97 -64.46 13.06 21.65 0.28 -64.18 16 9 Si 0.93 53.93 29.55 68.60 2.03 55.96 16 10 H -0.29 -16.28 7.11 99.48 0.71 -15.57 16 11 H -0.30 -17.82 7.11 99.48 0.71 -17.11 16 12 H -0.30 -17.21 7.11 99.48 0.71 -16.51 16 13 C 0.16 4.77 2.74 44.97 0.12 4.90 16 14 H 0.09 2.29 8.14 -2.39 -0.02 2.27 16 15 C -0.13 -3.68 4.81 30.67 0.15 -3.53 16 16 C -0.11 -2.17 5.88 30.62 0.18 -1.99 16 17 C -0.13 -2.42 6.08 30.67 0.19 -2.23 16 18 C 0.10 1.78 6.34 86.35 0.55 2.32 16 19 N -0.61 -17.42 2.97 -794.95 -2.36 -19.79 16 20 C 0.48 17.15 7.14 87.66 0.63 17.78 16 21 O -0.49 -23.31 8.89 -3.02 -0.03 -23.34 16 22 C 0.12 3.29 5.35 85.63 0.46 3.75 16 23 N -0.36 -12.65 3.40 -351.81 -1.19 -13.85 16 24 C 0.06 1.61 11.36 83.54 0.95 2.56 16 25 C -0.22 -6.70 5.76 -20.14 -0.12 -6.82 16 26 C -0.07 -1.61 6.25 -11.54 -0.07 -1.68 16 27 C -0.19 -4.31 10.02 30.60 0.31 -4.00 16 28 C -0.17 -3.47 10.23 30.60 0.31 -3.16 16 29 C 0.01 0.34 11.35 85.24 0.97 1.30 16 30 N -0.28 -13.32 11.66 -57.02 -0.66 -13.99 16 31 H 0.02 1.01 8.14 -2.38 -0.02 0.99 16 32 H 0.04 1.69 6.91 -2.39 -0.02 1.67 16 33 H 0.07 2.07 8.14 -2.38 -0.02 2.05 16 34 H 0.37 20.77 5.84 -92.70 -0.54 20.23 16 35 H 0.24 15.51 8.31 -92.71 -0.77 14.74 16 36 H 0.07 2.06 6.93 -2.39 -0.02 2.04 16 37 H 0.03 1.29 6.21 -2.39 -0.01 1.27 16 38 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 39 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 40 H 0.10 1.19 8.14 -2.38 -0.02 1.17 16 41 H 0.04 0.97 8.14 -2.39 -0.02 0.95 16 42 H 0.10 1.09 8.14 -2.38 -0.02 1.07 16 43 H 0.10 1.21 5.95 -2.39 -0.01 1.20 16 44 H 0.17 2.46 7.64 -2.38 -0.02 2.44 16 45 H 0.10 2.86 7.93 -2.39 -0.02 2.84 16 46 H 0.22 3.28 8.06 -2.91 -0.02 3.26 16 47 H 0.13 2.30 8.14 -2.39 -0.02 2.28 16 48 H 0.07 1.99 6.97 -2.39 -0.02 1.97 16 49 H 0.11 2.08 8.14 -2.39 -0.02 2.06 16 50 H 0.12 1.80 8.14 -2.39 -0.02 1.78 16 51 H 0.08 1.84 8.14 -2.38 -0.02 1.82 16 52 H 0.16 6.43 7.19 -2.91 -0.02 6.41 16 Total: -1.00 -89.14 401.56 3.79 -85.35 By element: Atomic # 1 Polarization: 32.48 SS G_CDS: 0.35 Total: 32.83 kcal Atomic # 6 Polarization: -7.37 SS G_CDS: 6.50 Total: -0.87 kcal Atomic # 7 Polarization: -144.86 SS G_CDS: -5.07 Total: -149.93 kcal Atomic # 8 Polarization: -23.31 SS G_CDS: -0.03 Total: -23.34 kcal Atomic # 14 Polarization: 53.93 SS G_CDS: 2.03 Total: 55.96 kcal Total: -89.14 3.79 -85.35 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266001537.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 191.878 kcal (2) G-P(sol) polarization free energy of solvation -89.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.349 kcal (6) G-S(sol) free energy of system = (1) + (5) 106.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds