Wall clock time and date at job start Wed Apr 1 2020 05:13:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08997 * 109.47379 * 2 1 4 4 N 1.46501 * 109.46667 * 120.00021 * 2 1 3 5 5 C 1.36943 * 120.00043 * 284.00387 * 4 2 1 6 6 H 1.08002 * 119.99350 * 0.02562 * 5 4 2 7 7 C 1.38809 * 120.00200 * 179.97438 * 5 4 2 8 8 N 1.31614 * 119.99867 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 119.99933 * 180.02562 * 7 5 4 10 10 H 1.48503 * 109.46961 * 90.00014 * 9 7 5 11 11 H 1.48496 * 109.47325 * 210.00398 * 9 7 5 12 12 H 1.48498 * 109.47143 * 330.00455 * 9 7 5 13 13 C 1.53002 * 109.47185 * 239.99565 * 2 1 3 14 14 H 1.08998 * 109.69937 * 293.01161 * 13 2 1 15 15 C 1.53185 * 109.58583 * 53.36858 * 13 2 1 16 16 C 1.53043 * 109.31424 * 174.42277 * 15 13 2 17 17 C 1.53041 * 109.53568 * 298.63615 * 16 15 13 18 18 C 1.53187 * 109.31536 * 61.36118 * 17 16 15 19 19 N 1.46924 * 108.77777 * 305.36792 * 18 17 16 20 20 C 1.34774 * 120.63035 * 233.58665 * 19 18 17 21 21 O 1.21684 * 120.00022 * 169.05085 * 20 19 18 22 22 C 1.46763 * 120.00253 * 349.04535 * 20 19 18 23 23 C 1.36834 * 126.91192 * 332.20356 * 22 20 19 24 24 N 1.33453 * 107.83633 * 179.81848 * 23 22 20 25 25 C 1.30557 * 109.68473 * 0.42344 * 24 23 22 26 26 N 1.34878 * 108.98640 * 359.76891 * 25 24 23 27 27 C 1.46440 * 124.99172 * 179.90807 * 26 25 24 28 28 C 1.53262 * 108.81867 * 342.94604 * 27 26 25 29 29 C 1.53159 * 109.44740 * 50.22332 * 28 27 26 30 30 C 1.51110 * 127.09501 * 179.78108 * 25 24 23 31 31 H 1.08994 * 109.47395 * 183.02947 * 1 2 3 32 32 H 1.08992 * 109.47118 * 303.03468 * 1 2 3 33 33 H 1.09002 * 109.46731 * 63.03138 * 1 2 3 34 34 H 0.96997 * 120.00337 * 104.01174 * 4 2 1 35 35 H 0.97001 * 119.99754 * 179.97438 * 8 7 5 36 36 H 1.09001 * 109.49986 * 294.37020 * 15 13 2 37 37 H 1.08996 * 109.50008 * 54.46602 * 15 13 2 38 38 H 1.09003 * 109.45948 * 58.65156 * 16 15 13 39 39 H 1.09000 * 109.46311 * 178.61373 * 16 15 13 40 40 H 1.08998 * 109.49514 * 301.40862 * 17 16 15 41 41 H 1.08997 * 109.49868 * 181.31462 * 17 16 15 42 42 H 1.09001 * 109.59121 * 185.57599 * 18 17 16 43 43 H 1.09004 * 109.58607 * 65.15121 * 18 17 16 44 44 H 1.08004 * 126.08237 * 359.96000 * 23 22 20 45 45 H 1.09000 * 109.58201 * 102.74411 * 27 26 25 46 46 H 1.09000 * 109.57838 * 223.14663 * 27 26 25 47 47 H 1.09006 * 109.47744 * 170.22175 * 28 27 26 48 48 H 1.09001 * 109.47285 * 290.22941 * 28 27 26 49 49 H 1.09003 * 109.50657 * 50.59411 * 29 28 27 50 50 H 1.08997 * 109.51076 * 170.74045 * 29 28 27 51 51 H 1.09000 * 109.70482 * 44.26833 * 30 25 24 52 52 H 1.08996 * 109.74502 * 283.66498 * 30 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 1.9759 -0.0647 2.4135 6 1 1.5821 0.9379 2.4916 7 6 2.4380 -0.7193 3.5470 8 7 2.9173 -1.9413 3.4517 9 14 2.3794 0.1344 5.2075 10 1 1.0830 -0.1592 5.8696 11 1 3.4924 -0.3595 6.0575 12 1 2.5163 1.6005 5.0155 13 6 2.0401 -0.7213 -1.2492 14 1 1.7843 -1.7794 -1.1926 15 6 1.3994 -0.1040 -2.4962 16 6 2.0164 -0.7342 -3.7470 17 6 3.5181 -0.4411 -3.7800 18 6 4.1828 -1.0621 -2.5476 19 7 3.4986 -0.5715 -1.3435 20 6 4.1957 0.0047 -0.3443 21 8 3.6097 0.5834 0.5515 22 6 5.6617 -0.0658 -0.3365 23 6 6.4403 -1.0446 -0.8915 24 7 7.7170 -0.7286 -0.6653 25 6 7.7811 0.3882 0.0079 26 7 6.5292 0.8358 0.2354 27 6 6.1951 2.0618 0.9632 28 6 7.4197 2.5070 1.7701 29 6 8.6490 2.5359 0.8571 30 6 9.0292 1.0996 0.4764 31 1 -0.3634 -1.0261 0.0543 32 1 -0.3633 0.5602 0.8615 33 1 -0.3633 0.4661 -0.9159 34 1 2.3717 -1.5912 1.1260 35 1 3.2406 -2.3985 4.2438 36 1 0.3260 -0.2933 -2.4853 37 1 1.5796 0.9709 -2.5036 38 1 1.8572 -1.8123 -3.7266 39 1 1.5448 -0.3144 -4.6355 40 1 3.6785 0.6370 -3.7754 41 1 3.9527 -0.8701 -4.6828 42 1 5.2333 -0.7732 -2.5143 43 1 4.1018 -2.1481 -2.5969 44 1 6.0849 -1.9164 -1.4207 45 1 5.9203 2.8436 0.2552 46 1 5.3622 1.8696 1.6396 47 1 7.2449 3.5035 2.1760 48 1 7.5905 1.8065 2.5876 49 1 8.4192 3.1030 -0.0450 50 1 9.4810 3.0060 1.3814 51 1 9.7666 1.1150 -0.3261 52 1 9.4417 0.5861 1.3449 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001266003381.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:13:20 Heat of formation + Delta-G solvation = 74.100598 kcal Electronic energy + Delta-G solvation = -33442.123461 eV Core-core repulsion = 29444.208586 eV Total energy + Delta-G solvation = -3997.914875 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -42.18250 -39.90363 -36.80503 -36.60132 -35.17120 -32.98915 -32.66841 -32.19683 -29.98159 -29.65927 -28.61140 -27.77292 -25.26328 -24.39302 -24.10886 -22.73200 -22.42778 -21.70686 -20.65864 -19.94543 -19.29473 -18.56345 -17.01842 -16.48363 -15.91300 -15.77320 -15.44368 -14.87809 -14.65804 -14.53765 -14.24364 -14.17219 -14.09241 -13.83966 -13.61725 -13.27587 -13.27244 -13.02875 -12.93091 -12.61120 -12.27944 -12.05391 -12.00710 -11.83559 -11.31517 -11.26542 -11.20636 -11.17789 -11.05057 -10.83223 -10.81356 -10.69503 -10.59808 -10.33868 -10.16489 -9.89950 -9.69712 -9.43042 -9.33863 -8.71919 -8.37604 -7.99552 -7.95822 -6.52537 -5.50700 -2.72448 1.84197 2.77389 3.15466 3.53012 3.57297 3.58090 3.59701 3.87738 4.31780 4.55136 4.57362 4.68070 4.76169 4.83422 4.91731 4.98676 5.15152 5.18412 5.24203 5.27948 5.43660 5.49102 5.55461 5.58147 5.58895 5.63636 5.66989 5.71414 5.78874 5.80584 5.87853 5.90463 5.92143 5.93702 6.03776 6.04518 6.12962 6.15253 6.18344 6.37201 6.46215 6.48533 6.54096 6.78342 6.84605 6.98420 7.07174 7.33727 7.40905 7.92889 7.97897 8.22594 8.65973 8.96207 9.77414 10.34714 10.70067 11.73372 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.007421 B = 0.006301 C = 0.003853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3772.421241 B = 4442.516259 C = 7264.783549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.178 3.822 3 H 0.067 0.933 4 N -0.698 5.698 5 C -0.182 4.182 6 H 0.062 0.938 7 C -0.026 4.026 8 N -0.942 5.942 9 Si 0.895 3.105 10 H -0.295 1.295 11 H -0.297 1.297 12 H -0.287 1.287 13 C 0.151 3.849 14 H 0.067 0.933 15 C -0.128 4.128 16 C -0.119 4.119 17 C -0.132 4.132 18 C 0.098 3.902 19 N -0.605 5.605 20 C 0.560 3.440 21 O -0.439 6.439 22 C -0.047 4.047 23 C 0.008 3.992 24 N -0.494 5.494 25 C 0.209 3.791 26 N -0.417 5.417 27 C 0.099 3.901 28 C -0.136 4.136 29 C -0.125 4.125 30 C -0.032 4.032 31 H 0.044 0.956 32 H 0.052 0.948 33 H 0.037 0.963 34 H 0.377 0.623 35 H 0.248 0.752 36 H 0.076 0.924 37 H 0.064 0.936 38 H 0.062 0.938 39 H 0.060 0.940 40 H 0.062 0.938 41 H 0.069 0.931 42 H 0.093 0.907 43 H 0.063 0.937 44 H 0.176 0.824 45 H 0.081 0.919 46 H 0.113 0.887 47 H 0.089 0.911 48 H 0.077 0.923 49 H 0.069 0.931 50 H 0.080 0.920 51 H 0.093 0.907 52 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.537 7.287 -14.725 18.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.068 3.932 3 H 0.085 0.915 4 N -0.338 5.338 5 C -0.314 4.314 6 H 0.080 0.920 7 C -0.220 4.220 8 N -0.594 5.594 9 Si 0.728 3.272 10 H -0.223 1.223 11 H -0.224 1.224 12 H -0.213 1.213 13 C 0.048 3.952 14 H 0.085 0.915 15 C -0.167 4.167 16 C -0.156 4.156 17 C -0.171 4.171 18 C -0.025 4.025 19 N -0.342 5.342 20 C 0.345 3.655 21 O -0.308 6.308 22 C -0.165 4.165 23 C -0.144 4.144 24 N -0.213 5.213 25 C -0.053 4.053 26 N -0.098 5.098 27 C -0.023 4.023 28 C -0.174 4.174 29 C -0.163 4.163 30 C -0.071 4.071 31 H 0.063 0.937 32 H 0.071 0.929 33 H 0.056 0.944 34 H 0.210 0.790 35 H 0.058 0.942 36 H 0.094 0.906 37 H 0.083 0.917 38 H 0.081 0.919 39 H 0.078 0.922 40 H 0.081 0.919 41 H 0.088 0.912 42 H 0.111 0.889 43 H 0.082 0.918 44 H 0.193 0.807 45 H 0.099 0.901 46 H 0.131 0.869 47 H 0.107 0.893 48 H 0.096 0.904 49 H 0.087 0.913 50 H 0.099 0.901 51 H 0.112 0.888 52 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 7.811 7.477 -14.185 17.836 hybrid contribution -0.642 0.265 1.248 1.429 sum 7.168 7.743 -12.937 16.694 Atomic orbital electron populations 1.22599 0.99879 1.00847 0.99712 1.20524 0.90413 0.97261 0.84987 0.91545 1.42328 1.73327 1.15767 1.02367 1.18978 1.30849 0.97094 0.84491 0.91956 1.24557 1.03438 0.96801 0.97190 1.69638 1.49831 1.12239 1.27643 0.86329 0.76828 0.78437 0.85560 1.22345 1.22361 1.21302 1.21509 0.78123 0.99708 0.95891 0.91528 1.22011 1.00070 1.00558 0.94014 1.21526 0.95314 1.00942 0.97858 1.21903 0.96139 1.01309 0.97708 1.22014 0.97743 0.98424 0.84344 1.47417 1.06884 1.62280 1.17633 1.16756 0.83780 0.82459 0.82513 1.91155 1.67797 1.38098 1.33715 1.21000 0.92873 0.95559 1.07092 1.22668 0.88149 0.99737 1.03831 1.69836 1.21446 1.12365 1.17680 1.23242 0.86524 0.94045 1.01445 1.45050 1.06085 1.19152 1.39509 1.22132 1.00006 0.83880 0.96243 1.21935 0.93660 1.03152 0.98641 1.21689 0.98332 0.96136 1.00126 1.20198 0.91258 0.93683 1.01936 0.93684 0.92860 0.94387 0.78979 0.94240 0.90570 0.91703 0.91877 0.92174 0.91881 0.91228 0.88903 0.91831 0.80711 0.90125 0.86858 0.89265 0.90409 0.91266 0.90100 0.88838 0.89272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.12 8.92 37.16 0.33 -2.79 16 2 C 0.18 3.61 1.78 -67.93 -0.12 3.49 16 3 H 0.07 1.49 6.31 -51.93 -0.33 1.16 16 4 N -0.70 -17.71 3.18 -53.42 -0.17 -17.88 16 5 C -0.18 -5.18 8.26 -15.06 -0.12 -5.30 16 6 H 0.06 1.78 7.83 -52.49 -0.41 1.37 16 7 C -0.03 -0.78 5.50 -17.43 -0.10 -0.88 16 8 N -0.94 -29.70 13.06 55.49 0.72 -28.97 16 9 Si 0.90 23.60 29.55 -169.99 -5.02 18.58 16 10 H -0.30 -7.77 7.11 56.52 0.40 -7.37 16 11 H -0.30 -7.95 7.11 56.52 0.40 -7.55 16 12 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 13 C 0.15 2.49 2.57 -67.60 -0.17 2.32 16 14 H 0.07 1.15 8.14 -51.93 -0.42 0.72 16 15 C -0.13 -1.64 4.62 -26.61 -0.12 -1.76 16 16 C -0.12 -1.25 5.88 -26.69 -0.16 -1.40 16 17 C -0.13 -1.39 6.08 -26.61 -0.16 -1.55 16 18 C 0.10 1.24 5.08 -3.71 -0.02 1.22 16 19 N -0.61 -9.95 2.97 -166.73 -0.50 -10.44 16 20 C 0.56 11.04 7.11 -12.82 -0.09 10.94 16 21 O -0.44 -10.17 8.67 5.20 0.05 -10.12 16 22 C -0.05 -0.86 6.32 -82.35 -0.52 -1.38 16 23 C 0.01 0.15 9.50 -17.36 -0.16 -0.02 16 24 N -0.49 -8.57 11.20 -10.35 -0.12 -8.69 16 25 C 0.21 3.28 7.64 -155.32 -1.19 2.10 16 26 N -0.42 -7.02 3.15 -109.76 -0.35 -7.36 16 27 C 0.10 1.46 6.50 -3.94 -0.03 1.43 16 28 C -0.14 -1.51 5.95 -26.51 -0.16 -1.67 16 29 C -0.12 -1.13 5.96 -26.45 -0.16 -1.28 16 30 C -0.03 -0.35 6.33 -27.49 -0.17 -0.52 16 31 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.05 1.06 8.11 -51.93 -0.42 0.64 16 33 H 0.04 0.57 6.29 -51.93 -0.33 0.24 16 34 H 0.38 10.48 7.72 -40.82 -0.32 10.16 16 35 H 0.25 7.70 8.31 -40.82 -0.34 7.36 16 36 H 0.08 0.91 6.63 -51.93 -0.34 0.57 16 37 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 38 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 39 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 40 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 41 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 42 H 0.09 1.19 4.60 -51.93 -0.24 0.95 16 43 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 44 H 0.18 2.62 6.55 -52.48 -0.34 2.27 16 45 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 46 H 0.11 2.06 7.15 -51.93 -0.37 1.69 16 47 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 48 H 0.08 0.96 8.12 -51.93 -0.42 0.54 16 49 H 0.07 0.60 8.12 -51.93 -0.42 0.18 16 50 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 51 H 0.09 0.88 8.14 -51.93 -0.42 0.45 16 52 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 LS Contribution 388.67 15.07 5.86 5.86 Total: -1.00 -34.81 388.67 -11.22 -46.03 By element: Atomic # 1 Polarization: 18.64 SS G_CDS: -8.57 Total: 10.07 kcal Atomic # 6 Polarization: 6.07 SS G_CDS: -3.12 Total: 2.95 kcal Atomic # 7 Polarization: -72.95 SS G_CDS: -0.40 Total: -73.35 kcal Atomic # 8 Polarization: -10.17 SS G_CDS: 0.05 Total: -10.12 kcal Atomic # 14 Polarization: 23.60 SS G_CDS: -5.02 Total: 18.58 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -34.81 -11.22 -46.03 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266003381.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.126 kcal (2) G-P(sol) polarization free energy of solvation -34.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.025 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds