Wall clock time and date at job start Wed Apr 1 2020 05:13:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08997 * 109.47379 * 2 1 4 4 N 1.46501 * 109.46667 * 120.00021 * 2 1 3 5 5 C 1.36943 * 120.00043 * 284.00387 * 4 2 1 6 6 H 1.08002 * 119.99350 * 0.02562 * 5 4 2 7 7 C 1.38809 * 120.00200 * 179.97438 * 5 4 2 8 8 N 1.31614 * 119.99867 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 119.99933 * 180.02562 * 7 5 4 10 10 H 1.48503 * 109.46961 * 90.00014 * 9 7 5 11 11 H 1.48496 * 109.47325 * 210.00398 * 9 7 5 12 12 H 1.48498 * 109.47143 * 330.00455 * 9 7 5 13 13 C 1.53002 * 109.47185 * 239.99565 * 2 1 3 14 14 H 1.08998 * 109.69937 * 293.01161 * 13 2 1 15 15 C 1.53185 * 109.58583 * 53.36858 * 13 2 1 16 16 C 1.53043 * 109.31424 * 174.42277 * 15 13 2 17 17 C 1.53041 * 109.53568 * 298.63615 * 16 15 13 18 18 C 1.53187 * 109.31536 * 61.36118 * 17 16 15 19 19 N 1.46924 * 108.77777 * 305.36792 * 18 17 16 20 20 C 1.34774 * 120.63035 * 233.58665 * 19 18 17 21 21 O 1.21684 * 120.00022 * 169.05085 * 20 19 18 22 22 C 1.46763 * 120.00253 * 349.04535 * 20 19 18 23 23 C 1.36834 * 126.91192 * 332.20356 * 22 20 19 24 24 N 1.33453 * 107.83633 * 179.81848 * 23 22 20 25 25 C 1.30557 * 109.68473 * 0.42344 * 24 23 22 26 26 N 1.34878 * 108.98640 * 359.76891 * 25 24 23 27 27 C 1.46440 * 124.99172 * 179.90807 * 26 25 24 28 28 C 1.53262 * 108.81867 * 342.94604 * 27 26 25 29 29 C 1.53159 * 109.44740 * 50.22332 * 28 27 26 30 30 C 1.51110 * 127.09501 * 179.78108 * 25 24 23 31 31 H 1.08994 * 109.47395 * 183.02947 * 1 2 3 32 32 H 1.08992 * 109.47118 * 303.03468 * 1 2 3 33 33 H 1.09002 * 109.46731 * 63.03138 * 1 2 3 34 34 H 0.96997 * 120.00337 * 104.01174 * 4 2 1 35 35 H 0.97001 * 119.99754 * 179.97438 * 8 7 5 36 36 H 1.09001 * 109.49986 * 294.37020 * 15 13 2 37 37 H 1.08996 * 109.50008 * 54.46602 * 15 13 2 38 38 H 1.09003 * 109.45948 * 58.65156 * 16 15 13 39 39 H 1.09000 * 109.46311 * 178.61373 * 16 15 13 40 40 H 1.08998 * 109.49514 * 301.40862 * 17 16 15 41 41 H 1.08997 * 109.49868 * 181.31462 * 17 16 15 42 42 H 1.09001 * 109.59121 * 185.57599 * 18 17 16 43 43 H 1.09004 * 109.58607 * 65.15121 * 18 17 16 44 44 H 1.08004 * 126.08237 * 359.96000 * 23 22 20 45 45 H 1.09000 * 109.58201 * 102.74411 * 27 26 25 46 46 H 1.09000 * 109.57838 * 223.14663 * 27 26 25 47 47 H 1.09006 * 109.47744 * 170.22175 * 28 27 26 48 48 H 1.09001 * 109.47285 * 290.22941 * 28 27 26 49 49 H 1.09003 * 109.50657 * 50.59411 * 29 28 27 50 50 H 1.08997 * 109.51076 * 170.74045 * 29 28 27 51 51 H 1.09000 * 109.70482 * 44.26833 * 30 25 24 52 52 H 1.08996 * 109.74502 * 283.66498 * 30 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 1.9759 -0.0647 2.4135 6 1 1.5821 0.9379 2.4916 7 6 2.4380 -0.7193 3.5470 8 7 2.9173 -1.9413 3.4517 9 14 2.3794 0.1344 5.2075 10 1 1.0830 -0.1592 5.8696 11 1 3.4924 -0.3595 6.0575 12 1 2.5163 1.6005 5.0155 13 6 2.0401 -0.7213 -1.2492 14 1 1.7843 -1.7794 -1.1926 15 6 1.3994 -0.1040 -2.4962 16 6 2.0164 -0.7342 -3.7470 17 6 3.5181 -0.4411 -3.7800 18 6 4.1828 -1.0621 -2.5476 19 7 3.4986 -0.5715 -1.3435 20 6 4.1957 0.0047 -0.3443 21 8 3.6097 0.5834 0.5515 22 6 5.6617 -0.0658 -0.3365 23 6 6.4403 -1.0446 -0.8915 24 7 7.7170 -0.7286 -0.6653 25 6 7.7811 0.3882 0.0079 26 7 6.5292 0.8358 0.2354 27 6 6.1951 2.0618 0.9632 28 6 7.4197 2.5070 1.7701 29 6 8.6490 2.5359 0.8571 30 6 9.0292 1.0996 0.4764 31 1 -0.3634 -1.0261 0.0543 32 1 -0.3633 0.5602 0.8615 33 1 -0.3633 0.4661 -0.9159 34 1 2.3717 -1.5912 1.1260 35 1 3.2406 -2.3985 4.2438 36 1 0.3260 -0.2933 -2.4853 37 1 1.5796 0.9709 -2.5036 38 1 1.8572 -1.8123 -3.7266 39 1 1.5448 -0.3144 -4.6355 40 1 3.6785 0.6370 -3.7754 41 1 3.9527 -0.8701 -4.6828 42 1 5.2333 -0.7732 -2.5143 43 1 4.1018 -2.1481 -2.5969 44 1 6.0849 -1.9164 -1.4207 45 1 5.9203 2.8436 0.2552 46 1 5.3622 1.8696 1.6396 47 1 7.2449 3.5035 2.1760 48 1 7.5905 1.8065 2.5876 49 1 8.4192 3.1030 -0.0450 50 1 9.4810 3.0060 1.3814 51 1 9.7666 1.1150 -0.3261 52 1 9.4417 0.5861 1.3449 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001266003381.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:13:19 Heat of formation + Delta-G solvation = 52.483568 kcal Electronic energy + Delta-G solvation = -33443.060846 eV Core-core repulsion = 29444.208586 eV Total energy + Delta-G solvation = -3998.852260 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -43.45121 -41.26980 -38.13329 -37.65169 -36.85348 -34.30574 -34.08426 -33.70724 -31.58452 -30.86868 -29.86389 -29.33499 -26.60117 -25.96410 -25.36308 -24.16449 -23.64384 -22.87371 -21.93606 -21.29529 -20.59353 -19.75342 -18.93983 -17.89440 -17.14553 -17.07936 -16.77113 -16.70641 -15.85322 -15.79304 -15.51685 -15.33306 -15.21605 -15.13902 -14.91052 -14.76066 -14.60703 -14.31211 -14.23445 -13.89500 -13.74158 -13.58824 -13.37229 -13.00920 -12.90591 -12.83483 -12.58954 -12.39370 -12.18547 -12.13154 -12.07463 -11.95142 -11.90267 -11.70086 -11.63112 -11.34648 -11.29371 -11.12407 -10.83225 -10.62235 -9.92177 -9.49227 -9.25150 -8.59276 -7.79486 -4.98150 0.49565 1.38693 1.40685 1.48104 1.54234 1.85820 2.30130 2.43119 2.62020 3.28332 3.51873 3.54339 3.57897 3.72710 3.78570 3.84678 3.93853 4.05374 4.11949 4.13916 4.25952 4.31579 4.37011 4.40989 4.41920 4.48393 4.50033 4.61836 4.74287 4.78047 4.79889 4.84307 4.88305 4.91075 4.93720 5.04414 5.05922 5.10078 5.12031 5.19908 5.22249 5.26693 5.29109 5.42616 5.47932 5.53771 5.57512 5.62201 5.93052 6.13510 6.41076 6.60635 6.92247 7.45365 7.52461 8.25555 8.48451 9.45418 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.007421 B = 0.006301 C = 0.003853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3772.421241 B = 4442.516259 C = 7264.783549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.176 3.824 3 H 0.045 0.955 4 N -0.702 5.702 5 C -0.161 4.161 6 H 0.055 0.945 7 C -0.093 4.093 8 N -0.979 5.979 9 Si 0.953 3.047 10 H -0.291 1.291 11 H -0.304 1.304 12 H -0.278 1.278 13 C 0.153 3.847 14 H 0.062 0.938 15 C -0.120 4.120 16 C -0.114 4.114 17 C -0.125 4.125 18 C 0.093 3.907 19 N -0.602 5.602 20 C 0.556 3.444 21 O -0.492 6.492 22 C -0.084 4.084 23 C 0.014 3.986 24 N -0.517 5.517 25 C 0.214 3.786 26 N -0.426 5.426 27 C 0.098 3.902 28 C -0.131 4.131 29 C -0.113 4.113 30 C -0.034 4.034 31 H 0.042 0.958 32 H 0.030 0.970 33 H 0.077 0.923 34 H 0.362 0.638 35 H 0.238 0.762 36 H 0.090 0.910 37 H 0.059 0.941 38 H 0.070 0.930 39 H 0.085 0.915 40 H 0.055 0.945 41 H 0.099 0.901 42 H 0.090 0.910 43 H 0.076 0.924 44 H 0.191 0.809 45 H 0.093 0.907 46 H 0.067 0.933 47 H 0.114 0.886 48 H 0.061 0.939 49 H 0.077 0.923 50 H 0.116 0.884 51 H 0.116 0.884 52 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.485 8.452 -17.141 20.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.068 3.932 3 H 0.062 0.938 4 N -0.340 5.340 5 C -0.294 4.294 6 H 0.073 0.927 7 C -0.282 4.282 8 N -0.634 5.634 9 Si 0.786 3.214 10 H -0.219 1.219 11 H -0.231 1.231 12 H -0.204 1.204 13 C 0.050 3.950 14 H 0.080 0.920 15 C -0.158 4.158 16 C -0.151 4.151 17 C -0.163 4.163 18 C -0.029 4.029 19 N -0.337 5.337 20 C 0.342 3.658 21 O -0.364 6.364 22 C -0.202 4.202 23 C -0.138 4.138 24 N -0.237 5.237 25 C -0.048 4.048 26 N -0.107 5.107 27 C -0.023 4.023 28 C -0.168 4.168 29 C -0.151 4.151 30 C -0.073 4.073 31 H 0.061 0.939 32 H 0.049 0.951 33 H 0.096 0.904 34 H 0.193 0.807 35 H 0.047 0.953 36 H 0.109 0.891 37 H 0.077 0.923 38 H 0.089 0.911 39 H 0.104 0.896 40 H 0.074 0.926 41 H 0.117 0.883 42 H 0.108 0.892 43 H 0.094 0.906 44 H 0.208 0.792 45 H 0.111 0.889 46 H 0.086 0.914 47 H 0.132 0.868 48 H 0.080 0.920 49 H 0.096 0.904 50 H 0.134 0.866 51 H 0.135 0.865 52 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 8.726 8.673 -16.678 20.725 hybrid contribution -0.902 -0.063 1.874 2.081 sum 7.824 8.610 -14.804 18.828 Atomic orbital electron populations 1.22439 0.97996 1.00737 1.00745 1.20616 0.91461 0.96126 0.84990 0.93759 1.42409 1.73387 1.15079 1.03146 1.19148 1.28158 0.96314 0.85788 0.92687 1.25192 1.04948 0.97724 1.00357 1.69803 1.52194 1.13712 1.27667 0.85378 0.76416 0.77836 0.81817 1.21942 1.23123 1.20388 1.21461 0.78527 0.99098 0.95917 0.92041 1.21964 1.00701 1.00039 0.93119 1.21521 0.94991 1.01362 0.97223 1.21878 0.96257 1.00825 0.97354 1.22261 0.97643 0.99282 0.83720 1.47551 1.06972 1.61185 1.18030 1.17121 0.84512 0.81740 0.82404 1.91116 1.68821 1.40829 1.35661 1.21057 0.92685 0.97216 1.09258 1.22957 0.88184 0.99632 1.03065 1.69886 1.21269 1.13447 1.19063 1.24281 0.87553 0.93394 0.99583 1.45286 1.06351 1.19533 1.39496 1.22182 1.00545 0.83573 0.96033 1.21974 0.93014 1.03807 0.98045 1.21685 0.98113 0.95059 1.00243 1.20518 0.89472 0.94422 1.02878 0.93895 0.95113 0.90399 0.80741 0.95281 0.89149 0.92257 0.91089 0.89649 0.92609 0.88296 0.89173 0.90557 0.79238 0.88902 0.91405 0.86769 0.92026 0.90442 0.86580 0.86543 0.88518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.82 8.92 71.98 0.64 -5.18 16 2 C 0.18 7.35 1.78 44.99 0.08 7.43 16 3 H 0.04 2.08 6.31 -2.39 -0.02 2.06 16 4 N -0.70 -37.29 3.18 -322.93 -1.03 -38.32 16 5 C -0.16 -9.56 8.26 84.03 0.69 -8.86 16 6 H 0.06 3.29 7.83 -2.91 -0.02 3.27 16 7 C -0.09 -5.74 5.50 84.86 0.47 -5.27 16 8 N -0.98 -64.47 13.06 21.65 0.28 -64.19 16 9 Si 0.95 50.48 29.55 68.60 2.03 52.51 16 10 H -0.29 -15.09 7.11 99.48 0.71 -14.39 16 11 H -0.30 -16.31 7.11 99.48 0.71 -15.60 16 12 H -0.28 -14.11 7.11 99.48 0.71 -13.40 16 13 C 0.15 5.03 2.57 44.97 0.12 5.15 16 14 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 15 C -0.12 -2.81 4.62 30.67 0.14 -2.66 16 16 C -0.11 -1.98 5.88 30.62 0.18 -1.80 16 17 C -0.13 -2.27 6.08 30.67 0.19 -2.08 16 18 C 0.09 2.24 5.08 86.36 0.44 2.68 16 19 N -0.60 -20.01 2.97 -799.63 -2.38 -22.39 16 20 C 0.56 22.97 7.11 86.47 0.62 23.59 16 21 O -0.49 -24.25 8.67 -4.30 -0.04 -24.28 16 22 C -0.08 -3.23 6.32 40.14 0.25 -2.97 16 23 C 0.01 0.49 9.50 84.12 0.80 1.29 16 24 N -0.52 -17.80 11.20 -186.67 -2.09 -19.89 16 25 C 0.21 6.61 7.64 138.29 1.06 7.66 16 26 N -0.43 -14.70 3.15 -501.18 -1.58 -16.28 16 27 C 0.10 3.00 6.50 86.48 0.56 3.56 16 28 C -0.13 -2.77 5.95 30.74 0.18 -2.58 16 29 C -0.11 -1.70 5.96 30.77 0.18 -1.52 16 30 C -0.03 -0.67 6.33 30.10 0.19 -0.48 16 31 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 32 H 0.03 1.23 8.11 -2.39 -0.02 1.21 16 33 H 0.08 2.20 6.29 -2.39 -0.01 2.19 16 34 H 0.36 21.12 7.72 -92.71 -0.72 20.40 16 35 H 0.24 15.50 8.31 -92.71 -0.77 14.73 16 36 H 0.09 1.88 6.63 -2.39 -0.02 1.86 16 37 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 38 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 39 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 40 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 41 H 0.10 1.29 8.14 -2.39 -0.02 1.27 16 42 H 0.09 2.25 4.60 -2.39 -0.01 2.24 16 43 H 0.08 1.66 8.14 -2.38 -0.02 1.64 16 44 H 0.19 5.69 6.55 -2.91 -0.02 5.67 16 45 H 0.09 2.51 8.14 -2.39 -0.02 2.49 16 46 H 0.07 2.69 7.15 -2.39 -0.02 2.68 16 47 H 0.11 1.83 8.14 -2.38 -0.02 1.81 16 48 H 0.06 1.51 8.12 -2.39 -0.02 1.49 16 49 H 0.08 1.09 8.12 -2.39 -0.02 1.07 16 50 H 0.12 1.04 8.14 -2.39 -0.02 1.02 16 51 H 0.12 1.80 8.14 -2.39 -0.02 1.78 16 52 H 0.10 1.81 8.14 -2.39 -0.02 1.79 16 Total: -1.00 -81.34 388.67 2.19 -79.14 By element: Atomic # 1 Polarization: 35.55 SS G_CDS: 0.21 Total: 35.76 kcal Atomic # 6 Polarization: 11.15 SS G_CDS: 6.79 Total: 17.94 kcal Atomic # 7 Polarization: -154.27 SS G_CDS: -6.79 Total: -161.06 kcal Atomic # 8 Polarization: -24.25 SS G_CDS: -0.04 Total: -24.28 kcal Atomic # 14 Polarization: 50.48 SS G_CDS: 2.03 Total: 52.51 kcal Total: -81.34 2.19 -79.14 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266003381.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.626 kcal (2) G-P(sol) polarization free energy of solvation -81.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.142 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds