Wall clock time and date at job start Wed Apr 1 2020 04:37:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.47137 * 2 1 4 4 C 1.52998 * 109.47175 * 239.99751 * 2 1 3 5 5 C 1.50707 * 109.46763 * 64.99803 * 4 2 1 6 6 C 1.39869 * 126.03652 * 90.03063 * 5 4 2 7 7 N 1.30838 * 108.20048 * 179.97438 * 6 5 4 8 8 N 1.40088 * 108.20497 * 359.97438 * 7 6 5 9 9 C 1.46502 * 126.03434 * 180.02562 * 8 7 6 10 10 C 1.34945 * 107.92714 * 359.75579 * 8 7 6 11 11 C 1.50704 * 109.46949 * 119.99962 * 2 1 3 12 12 O 1.21280 * 119.99651 * 120.00378 * 11 2 1 13 13 N 1.34776 * 120.00133 * 299.99424 * 11 2 1 14 14 C 1.46494 * 119.99973 * 180.02562 * 13 11 2 15 15 C 1.53144 * 109.40060 * 275.20878 * 14 13 11 16 16 C 1.53708 * 108.87544 * 186.06601 * 15 14 13 17 17 H 1.09009 * 112.09631 * 188.24935 * 16 15 14 18 18 C 1.54603 * 107.83126 * 312.22444 * 16 15 14 19 19 C 1.54306 * 104.75150 * 88.67105 * 18 16 15 20 20 C 1.54893 * 104.78724 * 0.02997 * 19 18 16 21 21 H 1.09006 * 112.34381 * 147.45567 * 20 19 18 22 22 C 1.53142 * 109.43499 * 155.00182 * 14 13 11 23 23 N 1.48277 * 104.12759 * 25.07351 * 20 19 18 24 24 C 1.36941 * 128.09563 * 138.46898 * 23 20 19 25 25 H 1.08004 * 119.99631 * 344.80791 * 24 23 20 26 26 C 1.38805 * 119.99860 * 164.81125 * 24 23 20 27 27 N 1.31616 * 120.00536 * 350.30996 * 26 24 23 28 28 Si 1.86804 * 119.99927 * 170.31174 * 26 24 23 29 29 H 1.48497 * 109.47345 * 59.99649 * 28 26 24 30 30 H 1.48498 * 109.47293 * 179.97438 * 28 26 24 31 31 H 1.48507 * 109.47130 * 300.00018 * 28 26 24 32 32 H 1.08998 * 109.47032 * 180.02562 * 1 2 3 33 33 H 1.09003 * 109.46732 * 299.99567 * 1 2 3 34 34 H 1.08990 * 109.47212 * 60.00261 * 1 2 3 35 35 H 1.08994 * 109.47391 * 185.00072 * 4 2 1 36 36 H 1.08998 * 109.47229 * 305.00401 * 4 2 1 37 37 H 1.07996 * 125.89936 * 359.97438 * 6 5 4 38 38 H 1.08999 * 109.46833 * 89.97364 * 9 8 7 39 39 H 1.09000 * 109.46655 * 209.97127 * 9 8 7 40 40 H 1.08995 * 109.47244 * 329.97211 * 9 8 7 41 41 H 1.08001 * 126.12986 * 180.24112 * 10 8 7 42 42 H 0.97000 * 119.99852 * 0.02562 * 13 11 2 43 43 H 1.09004 * 109.43573 * 35.09300 * 14 13 11 44 44 H 1.09008 * 109.56832 * 305.87824 * 15 14 13 45 45 H 1.08997 * 109.57796 * 66.24461 * 15 14 13 46 46 H 1.09004 * 110.38024 * 207.48625 * 18 16 15 47 47 H 1.08995 * 110.38402 * 329.73866 * 18 16 15 48 48 H 1.08999 * 110.38290 * 118.81498 * 19 18 16 49 49 H 1.08997 * 110.38687 * 241.17979 * 19 18 16 50 50 H 1.08996 * 109.57183 * 293.73456 * 22 14 13 51 51 H 1.09005 * 109.56777 * 53.97521 * 22 14 13 52 52 H 0.96998 * 120.00074 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.6412 0.0570 -2.4766 6 6 2.3902 1.0664 -3.0902 7 7 1.7184 1.5022 -4.1249 8 7 0.5191 0.7823 -4.2028 9 6 -0.5253 0.9547 -5.2156 10 6 0.4985 -0.1020 -3.1837 11 6 2.0323 -0.7104 1.2305 12 8 2.7296 -1.6965 1.1192 13 7 1.7068 -0.2499 2.4546 14 6 2.1956 -0.9402 3.6507 15 6 1.2528 -2.0982 3.9907 16 6 1.6883 -2.7176 5.3284 17 1 1.1444 -3.6356 5.5515 18 6 3.2166 -2.9437 5.2701 19 6 3.8289 -1.6234 5.7826 20 6 2.6114 -0.7214 6.1039 21 1 2.8019 -0.0512 6.9422 22 6 2.2466 0.0447 4.8223 23 7 1.5121 -1.6795 6.3725 24 6 0.5588 -1.6182 7.3537 25 1 0.6873 -0.9474 8.1903 26 6 -0.5727 -2.4183 7.2730 27 7 -0.8257 -3.0912 6.1705 28 14 -1.7364 -2.5399 8.7292 29 1 -2.2720 -1.1922 9.0487 30 1 -2.8593 -3.4508 8.3908 31 1 -1.0033 -3.0728 9.9056 32 1 -0.3633 -1.0276 0.0005 33 1 -0.3633 0.5138 0.8901 34 1 -0.3633 0.5137 -0.8899 35 1 3.1263 -0.7995 -1.2056 36 1 1.6054 -1.7198 -1.2951 37 1 3.3562 1.4243 -2.7659 38 1 -0.3242 0.2961 -6.0605 39 1 -1.4947 0.7061 -4.7838 40 1 -0.5339 1.9901 -5.5561 41 1 -0.2901 -0.8079 -2.9690 42 1 1.1489 0.5386 2.5436 43 1 3.1955 -1.3304 3.4611 44 1 0.2322 -1.7250 4.0763 45 1 1.3030 -2.8526 3.2055 46 1 3.5028 -3.7718 5.9187 47 1 3.5328 -3.1383 4.2454 48 1 4.4164 -1.8017 6.6832 49 1 4.4467 -1.1662 5.0097 50 1 3.0003 0.8072 4.6258 51 1 1.2721 0.5175 4.9445 52 1 -1.6165 -3.6500 6.1141 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001266653733.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:37:47 Heat of formation + Delta-G solvation = 60.929920 kcal Electronic energy + Delta-G solvation = -31190.341723 eV Core-core repulsion = 27191.855725 eV Total energy + Delta-G solvation = -3998.485998 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -41.44287 -39.99654 -38.70472 -35.18427 -34.36006 -33.22747 -32.58023 -30.60090 -30.22026 -29.29301 -29.14748 -27.91289 -25.82654 -24.74820 -23.36380 -23.26609 -21.40830 -21.22023 -20.30611 -19.66545 -19.17422 -18.52859 -17.26200 -16.90904 -16.30320 -16.06339 -15.63449 -15.15214 -14.73021 -14.60398 -14.31855 -14.13913 -13.75142 -13.35719 -13.30984 -13.11983 -12.97904 -12.81481 -12.77465 -12.48739 -12.42253 -11.99972 -11.92169 -11.85695 -11.44949 -11.36579 -11.22051 -11.12355 -10.99486 -10.77620 -10.63953 -10.62889 -10.59227 -10.11959 -9.72882 -9.63192 -9.60737 -9.37956 -9.36738 -9.28574 -8.68400 -8.50917 -8.30914 -6.80540 -5.74909 -3.09772 1.67158 2.29649 2.59767 3.01696 3.38796 3.44712 3.44966 3.63293 4.26271 4.47720 4.62689 4.78412 4.82725 4.86145 5.00070 5.00379 5.04340 5.26949 5.36833 5.39358 5.41633 5.49052 5.58107 5.63685 5.77343 5.79267 5.83185 5.84425 5.95589 6.00821 6.05016 6.06677 6.18587 6.23602 6.25504 6.34377 6.47545 6.52080 6.57314 6.72141 6.73299 6.78306 6.81188 6.90557 7.01277 7.09208 7.26653 7.48602 7.59864 7.63023 7.79931 7.96474 8.25909 8.63783 9.15308 9.77596 10.56966 11.37171 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.017438 B = 0.002326 C = 0.002157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1605.344783 B =12035.271749 C =12976.488352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.105 4.105 3 H 0.092 0.908 4 C -0.021 4.021 5 C -0.228 4.228 6 C 0.052 3.948 7 N -0.301 5.301 8 N -0.380 5.380 9 C 0.102 3.898 10 C 0.056 3.944 11 C 0.514 3.486 12 O -0.546 6.546 13 N -0.722 5.722 14 C 0.146 3.854 15 C -0.119 4.119 16 C 0.183 3.817 17 H 0.108 0.892 18 C -0.145 4.145 19 C -0.131 4.131 20 C 0.151 3.849 21 H 0.069 0.931 22 C -0.135 4.135 23 N -0.583 5.583 24 C -0.224 4.224 25 H 0.074 0.926 26 C -0.004 4.004 27 N -0.910 5.910 28 Si 0.908 3.092 29 H -0.286 1.286 30 H -0.291 1.291 31 H -0.286 1.286 32 H 0.061 0.939 33 H 0.059 0.941 34 H 0.063 0.937 35 H 0.078 0.922 36 H 0.074 0.926 37 H 0.182 0.818 38 H 0.073 0.927 39 H 0.086 0.914 40 H 0.087 0.913 41 H 0.173 0.827 42 H 0.393 0.607 43 H 0.081 0.919 44 H 0.073 0.927 45 H 0.042 0.958 46 H 0.051 0.949 47 H 0.057 0.943 48 H 0.053 0.947 49 H 0.054 0.946 50 H 0.047 0.953 51 H 0.064 0.936 52 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.446 8.041 -18.168 20.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.126 4.126 3 H 0.110 0.890 4 C -0.060 4.060 5 C -0.239 4.239 6 C -0.134 4.134 7 N -0.123 5.123 8 N -0.163 5.163 9 C -0.039 4.039 10 C -0.089 4.089 11 C 0.299 3.701 12 O -0.423 6.423 13 N -0.372 5.372 14 C 0.043 3.957 15 C -0.159 4.159 16 C 0.076 3.924 17 H 0.126 0.874 18 C -0.184 4.184 19 C -0.170 4.170 20 C 0.042 3.958 21 H 0.087 0.913 22 C -0.176 4.176 23 N -0.304 5.304 24 C -0.352 4.352 25 H 0.091 0.909 26 C -0.201 4.201 27 N -0.556 5.556 28 Si 0.739 3.261 29 H -0.212 1.212 30 H -0.217 1.217 31 H -0.212 1.212 32 H 0.080 0.920 33 H 0.078 0.922 34 H 0.082 0.918 35 H 0.097 0.903 36 H 0.093 0.907 37 H 0.199 0.801 38 H 0.091 0.909 39 H 0.105 0.895 40 H 0.106 0.894 41 H 0.190 0.810 42 H 0.226 0.774 43 H 0.099 0.901 44 H 0.091 0.909 45 H 0.060 0.940 46 H 0.070 0.930 47 H 0.076 0.924 48 H 0.072 0.928 49 H 0.073 0.927 50 H 0.065 0.935 51 H 0.082 0.918 52 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 2.539 8.066 -19.241 21.017 hybrid contribution -1.099 -0.153 1.326 1.730 sum 1.440 7.913 -17.914 19.637 Atomic orbital electron populations 1.21786 0.93248 1.02695 1.02256 1.21291 0.97494 1.00698 0.93156 0.88977 1.19665 1.01619 0.97025 0.87650 1.20125 0.96673 1.04471 1.02635 1.23835 1.00117 0.96159 0.93251 1.77341 0.94123 1.19152 1.21664 1.48448 1.16021 1.28670 1.23120 1.21832 0.87870 1.04097 0.90124 1.22381 1.00170 0.96082 0.90300 1.20554 0.80164 0.84648 0.84694 1.90674 1.38456 1.26325 1.86873 1.46372 1.53006 1.31650 1.06137 1.21309 0.98695 0.93257 0.82436 1.22377 0.99593 0.95722 0.98224 1.21453 0.90155 0.94342 0.86476 0.87420 1.22803 0.99659 0.96580 0.99357 1.22690 0.97718 0.97098 0.99522 1.21549 0.89266 0.91536 0.93400 0.91257 1.22498 1.01091 0.97333 0.96633 1.45170 1.30520 1.21100 1.33608 1.18927 0.96663 1.21493 0.98167 0.90866 1.24823 0.97129 1.01080 0.97113 1.69878 1.27707 1.33182 1.24820 0.86272 0.80357 0.77388 0.82116 1.21242 1.21713 1.21245 0.92029 0.92239 0.91843 0.90298 0.90727 0.80108 0.90888 0.89492 0.89404 0.81031 0.77379 0.90063 0.90876 0.93965 0.92999 0.92418 0.92809 0.92694 0.93463 0.91764 0.93711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.44 8.80 37.16 0.33 -1.11 16 2 C -0.10 -1.17 2.71 -91.77 -0.25 -1.42 16 3 H 0.09 0.92 8.14 -51.93 -0.42 0.49 16 4 C -0.02 -0.23 4.52 -27.88 -0.13 -0.35 16 5 C -0.23 -2.30 4.81 -105.05 -0.51 -2.80 16 6 C 0.05 0.55 11.96 -17.36 -0.21 0.34 16 7 N -0.30 -3.46 12.58 30.62 0.39 -3.08 16 8 N -0.38 -3.53 4.01 -68.16 -0.27 -3.80 16 9 C 0.10 0.52 11.47 59.85 0.69 1.21 16 10 C 0.06 0.50 10.05 -17.22 -0.17 0.33 16 11 C 0.51 7.81 7.12 -10.98 -0.08 7.73 16 12 O -0.55 -10.31 15.58 5.56 0.09 -10.23 16 13 N -0.72 -11.02 4.97 -53.66 -0.27 -11.29 16 14 C 0.15 2.64 2.10 -67.79 -0.14 2.50 16 15 C -0.12 -2.56 5.11 -26.29 -0.13 -2.70 16 16 C 0.18 4.24 3.12 -65.74 -0.21 4.04 16 17 H 0.11 2.87 6.38 -51.92 -0.33 2.54 16 18 C -0.14 -2.87 5.98 -25.21 -0.15 -3.02 16 19 C -0.13 -2.36 5.99 -25.05 -0.15 -2.51 16 20 C 0.15 3.00 4.34 -65.59 -0.28 2.71 16 21 H 0.07 1.33 8.14 -51.93 -0.42 0.90 16 22 C -0.14 -2.39 5.08 -26.29 -0.13 -2.52 16 23 N -0.58 -14.04 2.82 -152.60 -0.43 -14.47 16 24 C -0.22 -5.96 10.37 -15.06 -0.16 -6.11 16 25 H 0.07 1.90 7.85 -52.48 -0.41 1.49 16 26 C 0.00 -0.12 5.42 -17.43 -0.09 -0.21 16 27 N -0.91 -25.45 10.61 55.49 0.59 -24.86 16 28 Si 0.91 21.47 29.56 -169.99 -5.03 16.45 16 29 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 30 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 31 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 32 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.06 0.60 7.56 -51.93 -0.39 0.20 16 34 H 0.06 0.56 6.43 -51.93 -0.33 0.23 16 35 H 0.08 0.93 7.95 -51.93 -0.41 0.51 16 36 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.18 1.47 8.06 -52.49 -0.42 1.04 16 38 H 0.07 0.30 8.14 -51.93 -0.42 -0.13 16 39 H 0.09 0.25 8.14 -51.93 -0.42 -0.17 16 40 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 41 H 0.17 1.11 8.06 -52.49 -0.42 0.68 16 42 H 0.39 5.13 8.02 -40.82 -0.33 4.80 16 43 H 0.08 1.56 4.97 -51.93 -0.26 1.30 16 44 H 0.07 1.79 8.00 -51.92 -0.42 1.37 16 45 H 0.04 0.94 8.14 -51.93 -0.42 0.51 16 46 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 47 H 0.06 1.10 7.05 -51.93 -0.37 0.74 16 48 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 49 H 0.05 0.90 7.04 -51.93 -0.37 0.53 16 50 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 51 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 52 H 0.25 6.97 8.31 -40.82 -0.34 6.63 16 LS Contribution 403.78 15.07 6.08 6.08 Total: -1.00 -32.44 403.78 -9.30 -41.74 By element: Atomic # 1 Polarization: 16.03 SS G_CDS: -8.67 Total: 7.36 kcal Atomic # 6 Polarization: -2.14 SS G_CDS: -1.78 Total: -3.91 kcal Atomic # 7 Polarization: -57.50 SS G_CDS: 0.00 Total: -57.49 kcal Atomic # 8 Polarization: -10.31 SS G_CDS: 0.09 Total: -10.23 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.03 Total: 16.45 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -32.44 -9.30 -41.74 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266653733.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.670 kcal (2) G-P(sol) polarization free energy of solvation -32.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.740 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds