Wall clock time and date at job start Wed Apr 1 2020 04:37:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.47137 * 2 1 4 4 C 1.52998 * 109.47175 * 239.99751 * 2 1 3 5 5 C 1.50707 * 109.46763 * 64.99803 * 4 2 1 6 6 C 1.39869 * 126.03652 * 90.03063 * 5 4 2 7 7 N 1.30838 * 108.20048 * 179.97438 * 6 5 4 8 8 N 1.40088 * 108.20497 * 359.97438 * 7 6 5 9 9 C 1.46502 * 126.03434 * 180.02562 * 8 7 6 10 10 C 1.34945 * 107.92714 * 359.75579 * 8 7 6 11 11 C 1.50704 * 109.46949 * 119.99962 * 2 1 3 12 12 O 1.21280 * 119.99651 * 120.00378 * 11 2 1 13 13 N 1.34776 * 120.00133 * 299.99424 * 11 2 1 14 14 C 1.46494 * 119.99973 * 180.02562 * 13 11 2 15 15 C 1.53144 * 109.40060 * 275.20878 * 14 13 11 16 16 C 1.53708 * 108.87544 * 186.06601 * 15 14 13 17 17 H 1.09009 * 112.09631 * 188.24935 * 16 15 14 18 18 C 1.54603 * 107.83126 * 312.22444 * 16 15 14 19 19 C 1.54306 * 104.75150 * 88.67105 * 18 16 15 20 20 C 1.54893 * 104.78724 * 0.02997 * 19 18 16 21 21 H 1.09006 * 112.34381 * 147.45567 * 20 19 18 22 22 C 1.53142 * 109.43499 * 155.00182 * 14 13 11 23 23 N 1.48277 * 104.12759 * 25.07351 * 20 19 18 24 24 C 1.36941 * 128.09563 * 138.46898 * 23 20 19 25 25 H 1.08004 * 119.99631 * 344.80791 * 24 23 20 26 26 C 1.38805 * 119.99860 * 164.81125 * 24 23 20 27 27 N 1.31616 * 120.00536 * 350.30996 * 26 24 23 28 28 Si 1.86804 * 119.99927 * 170.31174 * 26 24 23 29 29 H 1.48497 * 109.47345 * 59.99649 * 28 26 24 30 30 H 1.48498 * 109.47293 * 179.97438 * 28 26 24 31 31 H 1.48507 * 109.47130 * 300.00018 * 28 26 24 32 32 H 1.08998 * 109.47032 * 180.02562 * 1 2 3 33 33 H 1.09003 * 109.46732 * 299.99567 * 1 2 3 34 34 H 1.08990 * 109.47212 * 60.00261 * 1 2 3 35 35 H 1.08994 * 109.47391 * 185.00072 * 4 2 1 36 36 H 1.08998 * 109.47229 * 305.00401 * 4 2 1 37 37 H 1.07996 * 125.89936 * 359.97438 * 6 5 4 38 38 H 1.08999 * 109.46833 * 89.97364 * 9 8 7 39 39 H 1.09000 * 109.46655 * 209.97127 * 9 8 7 40 40 H 1.08995 * 109.47244 * 329.97211 * 9 8 7 41 41 H 1.08001 * 126.12986 * 180.24112 * 10 8 7 42 42 H 0.97000 * 119.99852 * 0.02562 * 13 11 2 43 43 H 1.09004 * 109.43573 * 35.09300 * 14 13 11 44 44 H 1.09008 * 109.56832 * 305.87824 * 15 14 13 45 45 H 1.08997 * 109.57796 * 66.24461 * 15 14 13 46 46 H 1.09004 * 110.38024 * 207.48625 * 18 16 15 47 47 H 1.08995 * 110.38402 * 329.73866 * 18 16 15 48 48 H 1.08999 * 110.38290 * 118.81498 * 19 18 16 49 49 H 1.08997 * 110.38687 * 241.17979 * 19 18 16 50 50 H 1.08996 * 109.57183 * 293.73456 * 22 14 13 51 51 H 1.09005 * 109.56777 * 53.97521 * 22 14 13 52 52 H 0.96998 * 120.00074 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.6412 0.0570 -2.4766 6 6 2.3902 1.0664 -3.0902 7 7 1.7184 1.5022 -4.1249 8 7 0.5191 0.7823 -4.2028 9 6 -0.5253 0.9547 -5.2156 10 6 0.4985 -0.1020 -3.1837 11 6 2.0323 -0.7104 1.2305 12 8 2.7296 -1.6965 1.1192 13 7 1.7068 -0.2499 2.4546 14 6 2.1956 -0.9402 3.6507 15 6 1.2528 -2.0982 3.9907 16 6 1.6883 -2.7176 5.3284 17 1 1.1444 -3.6356 5.5515 18 6 3.2166 -2.9437 5.2701 19 6 3.8289 -1.6234 5.7826 20 6 2.6114 -0.7214 6.1039 21 1 2.8019 -0.0512 6.9422 22 6 2.2466 0.0447 4.8223 23 7 1.5121 -1.6795 6.3725 24 6 0.5588 -1.6182 7.3537 25 1 0.6873 -0.9474 8.1903 26 6 -0.5727 -2.4183 7.2730 27 7 -0.8257 -3.0912 6.1705 28 14 -1.7364 -2.5399 8.7292 29 1 -2.2720 -1.1922 9.0487 30 1 -2.8593 -3.4508 8.3908 31 1 -1.0033 -3.0728 9.9056 32 1 -0.3633 -1.0276 0.0005 33 1 -0.3633 0.5138 0.8901 34 1 -0.3633 0.5137 -0.8899 35 1 3.1263 -0.7995 -1.2056 36 1 1.6054 -1.7198 -1.2951 37 1 3.3562 1.4243 -2.7659 38 1 -0.3242 0.2961 -6.0605 39 1 -1.4947 0.7061 -4.7838 40 1 -0.5339 1.9901 -5.5561 41 1 -0.2901 -0.8079 -2.9690 42 1 1.1489 0.5386 2.5436 43 1 3.1955 -1.3304 3.4611 44 1 0.2322 -1.7250 4.0763 45 1 1.3030 -2.8526 3.2055 46 1 3.5028 -3.7718 5.9187 47 1 3.5328 -3.1383 4.2454 48 1 4.4164 -1.8017 6.6832 49 1 4.4467 -1.1662 5.0097 50 1 3.0003 0.8072 4.6258 51 1 1.2721 0.5175 4.9445 52 1 -1.6165 -3.6500 6.1141 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001266653733.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:37:46 Heat of formation + Delta-G solvation = 41.460717 kcal Electronic energy + Delta-G solvation = -31191.185971 eV Core-core repulsion = 27191.855725 eV Total energy + Delta-G solvation = -3999.330246 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -42.16481 -41.43607 -40.12990 -36.16227 -35.79617 -34.49197 -33.86066 -31.91475 -31.63321 -30.97848 -30.49941 -28.58605 -26.66177 -26.44984 -24.87847 -24.57371 -22.82698 -21.93687 -21.31238 -20.94124 -20.63818 -20.13467 -18.74350 -17.98597 -17.50975 -17.33597 -16.63302 -16.30822 -16.21862 -15.90259 -15.54174 -15.27504 -14.89208 -14.60483 -14.48014 -14.42658 -14.10362 -13.91656 -13.71048 -13.62814 -13.48883 -13.19036 -13.17878 -13.11790 -13.08224 -12.81067 -12.76300 -12.53890 -12.40338 -12.27085 -12.08055 -11.99645 -11.95656 -11.41986 -11.36831 -11.29690 -11.09237 -10.93702 -10.75828 -10.49727 -10.31490 -9.80065 -9.24760 -8.73260 -7.78825 -5.13793 0.98217 1.48918 1.51249 1.56897 1.73318 1.78924 1.84071 2.42139 2.53876 3.38722 3.59263 3.67924 3.83781 3.99067 4.01220 4.11057 4.13012 4.17314 4.30217 4.37889 4.39156 4.45395 4.46093 4.51750 4.55405 4.59722 4.63824 4.69431 4.72098 4.78781 4.89390 4.92595 4.95753 5.01395 5.05062 5.16457 5.18334 5.22251 5.26427 5.30698 5.32428 5.36178 5.41929 5.58672 5.59331 5.73528 5.76338 5.80769 5.89757 6.17646 6.30715 6.73192 6.77538 7.13093 7.41669 7.80851 8.61668 9.31884 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.017438 B = 0.002326 C = 0.002157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1605.344783 B =12035.271749 C =12976.488352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.093 4.093 3 H 0.113 0.887 4 C -0.011 4.011 5 C -0.242 4.242 6 C 0.045 3.955 7 N -0.335 5.335 8 N -0.382 5.382 9 C 0.093 3.907 10 C 0.062 3.938 11 C 0.511 3.489 12 O -0.584 6.584 13 N -0.717 5.717 14 C 0.159 3.841 15 C -0.101 4.101 16 C 0.176 3.824 17 H 0.063 0.937 18 C -0.137 4.137 19 C -0.120 4.120 20 C 0.142 3.858 21 H 0.080 0.920 22 C -0.124 4.124 23 N -0.603 5.603 24 C -0.230 4.230 25 H 0.078 0.922 26 C -0.059 4.059 27 N -0.936 5.936 28 Si 0.968 3.032 29 H -0.278 1.278 30 H -0.300 1.300 31 H -0.283 1.283 32 H 0.050 0.950 33 H 0.061 0.939 34 H 0.081 0.919 35 H 0.068 0.932 36 H 0.063 0.937 37 H 0.195 0.805 38 H 0.083 0.917 39 H 0.112 0.888 40 H 0.090 0.910 41 H 0.197 0.803 42 H 0.406 0.594 43 H 0.079 0.921 44 H 0.037 0.963 45 H 0.024 0.976 46 H 0.049 0.951 47 H 0.063 0.937 48 H 0.065 0.935 49 H 0.081 0.919 50 H 0.084 0.916 51 H 0.051 0.949 52 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.935 10.020 -18.838 21.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.114 4.114 3 H 0.131 0.869 4 C -0.050 4.050 5 C -0.253 4.253 6 C -0.140 4.140 7 N -0.157 5.157 8 N -0.164 5.164 9 C -0.047 4.047 10 C -0.085 4.085 11 C 0.299 3.701 12 O -0.464 6.464 13 N -0.367 5.367 14 C 0.055 3.945 15 C -0.142 4.142 16 C 0.068 3.932 17 H 0.081 0.919 18 C -0.176 4.176 19 C -0.159 4.159 20 C 0.035 3.965 21 H 0.098 0.902 22 C -0.164 4.164 23 N -0.324 5.324 24 C -0.359 4.359 25 H 0.096 0.904 26 C -0.253 4.253 27 N -0.583 5.583 28 Si 0.798 3.202 29 H -0.204 1.204 30 H -0.226 1.226 31 H -0.210 1.210 32 H 0.069 0.931 33 H 0.080 0.920 34 H 0.099 0.901 35 H 0.086 0.914 36 H 0.081 0.919 37 H 0.212 0.788 38 H 0.102 0.898 39 H 0.130 0.870 40 H 0.108 0.892 41 H 0.214 0.786 42 H 0.242 0.758 43 H 0.097 0.903 44 H 0.056 0.944 45 H 0.042 0.958 46 H 0.068 0.932 47 H 0.082 0.918 48 H 0.084 0.916 49 H 0.099 0.901 50 H 0.103 0.897 51 H 0.070 0.930 52 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 3.040 10.101 -19.928 22.548 hybrid contribution -1.258 -0.801 1.488 2.107 sum 1.781 9.300 -18.440 20.729 Atomic orbital electron populations 1.21760 0.92207 1.02294 1.03231 1.21265 0.98104 1.01067 0.90948 0.86917 1.19498 1.00821 0.96600 0.88094 1.20036 0.97496 1.04993 1.02794 1.24125 1.00707 0.96133 0.93034 1.77291 0.95403 1.20528 1.22462 1.48785 1.15951 1.28072 1.23588 1.22165 0.87943 1.04670 0.89951 1.22769 1.00261 0.95795 0.89646 1.21280 0.79181 0.84103 0.85501 1.90658 1.40212 1.28131 1.87413 1.46225 1.53136 1.31835 1.05487 1.20964 0.97306 0.92395 0.83880 1.22102 0.98491 0.96590 0.96977 1.21316 0.91945 0.92822 0.87071 0.91929 1.22685 0.97117 0.97933 0.99880 1.22625 0.97123 0.95332 1.00783 1.21832 0.88404 0.91542 0.94759 0.90215 1.22349 1.01544 0.97449 0.95062 1.45332 1.31053 1.22703 1.33360 1.19257 0.96972 1.20822 0.98847 0.90449 1.25530 0.98915 1.01574 0.99289 1.70086 1.27771 1.34053 1.26426 0.85315 0.78252 0.77275 0.79397 1.20373 1.22613 1.20962 0.93133 0.92044 0.90051 0.91369 0.91863 0.78789 0.89814 0.86958 0.89176 0.78649 0.75823 0.90331 0.94402 0.95760 0.93214 0.91798 0.91642 0.90072 0.89729 0.93047 0.94725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.54 8.80 71.98 0.63 -1.90 16 2 C -0.09 -1.92 2.71 -11.54 -0.03 -1.95 16 3 H 0.11 1.94 8.14 -2.39 -0.02 1.92 16 4 C -0.01 -0.23 4.52 29.85 0.13 -0.10 16 5 C -0.24 -4.51 4.81 -20.14 -0.10 -4.61 16 6 C 0.05 0.88 11.96 85.24 1.02 1.90 16 7 N -0.33 -7.26 12.58 -57.03 -0.72 -7.98 16 8 N -0.38 -6.34 4.01 -369.57 -1.48 -7.83 16 9 C 0.09 0.74 11.47 127.77 1.47 2.20 16 10 C 0.06 0.98 10.05 83.54 0.84 1.82 16 11 C 0.51 15.06 7.12 87.66 0.62 15.68 16 12 O -0.58 -21.95 15.58 -3.03 -0.05 -22.00 16 13 N -0.72 -20.93 4.97 -442.08 -2.20 -23.13 16 14 C 0.16 5.58 2.10 45.09 0.09 5.68 16 15 C -0.10 -4.48 5.11 30.88 0.16 -4.32 16 16 C 0.18 8.38 3.12 45.43 0.14 8.52 16 17 H 0.06 3.54 6.38 -2.38 -0.02 3.52 16 18 C -0.14 -5.37 5.98 31.58 0.19 -5.18 16 19 C -0.12 -4.02 5.99 31.68 0.19 -3.83 16 20 C 0.14 5.35 4.34 45.53 0.20 5.55 16 21 H 0.08 2.84 8.14 -2.38 -0.02 2.82 16 22 C -0.12 -4.10 5.08 30.88 0.16 -3.95 16 23 N -0.60 -29.14 2.82 -636.71 -1.79 -30.94 16 24 C -0.23 -12.32 10.37 84.03 0.87 -11.44 16 25 H 0.08 3.98 7.85 -2.91 -0.02 3.96 16 26 C -0.06 -3.25 5.42 84.86 0.46 -2.79 16 27 N -0.94 -54.54 10.61 21.65 0.23 -54.31 16 28 Si 0.97 44.94 29.56 68.60 2.03 46.97 16 29 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 30 H -0.30 -14.18 7.11 99.48 0.71 -13.48 16 31 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 32 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 33 H 0.06 1.12 7.56 -2.39 -0.02 1.10 16 34 H 0.08 1.23 6.43 -2.39 -0.02 1.22 16 35 H 0.07 1.57 7.95 -2.39 -0.02 1.55 16 36 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 37 H 0.20 2.93 8.06 -2.91 -0.02 2.91 16 38 H 0.08 0.50 8.14 -2.39 -0.02 0.48 16 39 H 0.11 0.31 8.14 -2.39 -0.02 0.29 16 40 H 0.09 0.68 8.14 -2.39 -0.02 0.66 16 41 H 0.20 1.98 8.06 -2.91 -0.02 1.96 16 42 H 0.41 9.83 8.02 -92.71 -0.74 9.09 16 43 H 0.08 2.87 4.97 -2.38 -0.01 2.86 16 44 H 0.04 1.92 8.00 -2.38 -0.02 1.90 16 45 H 0.02 1.12 8.14 -2.39 -0.02 1.10 16 46 H 0.05 1.94 8.14 -2.38 -0.02 1.92 16 47 H 0.06 2.41 7.05 -2.39 -0.02 2.39 16 48 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 49 H 0.08 2.33 7.04 -2.39 -0.02 2.32 16 50 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 51 H 0.05 1.85 8.14 -2.38 -0.02 1.83 16 52 H 0.24 14.06 8.31 -92.71 -0.77 13.29 16 Total: -1.00 -72.73 403.78 3.24 -69.49 By element: Atomic # 1 Polarization: 28.28 SS G_CDS: 0.17 Total: 28.45 kcal Atomic # 6 Polarization: -5.78 SS G_CDS: 7.05 Total: 1.27 kcal Atomic # 7 Polarization: -118.22 SS G_CDS: -5.96 Total: -124.18 kcal Atomic # 8 Polarization: -21.95 SS G_CDS: -0.05 Total: -22.00 kcal Atomic # 14 Polarization: 44.94 SS G_CDS: 2.03 Total: 46.97 kcal Total: -72.73 3.24 -69.49 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266653733.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.948 kcal (2) G-P(sol) polarization free energy of solvation -72.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.487 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds