Wall clock time and date at job start Wed Apr 1 2020 04:37:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08999 * 109.47218 * 2 1 4 4 C 1.53000 * 109.47011 * 120.00381 * 2 1 3 5 5 C 1.50701 * 109.46855 * 295.00047 * 4 2 1 6 6 C 1.39866 * 126.04287 * 90.02297 * 5 4 2 7 7 N 1.30841 * 108.20457 * 179.97438 * 6 5 4 8 8 N 1.40089 * 108.20315 * 0.02562 * 7 6 5 9 9 C 1.46502 * 126.03535 * 180.02562 * 8 7 6 10 10 C 1.34947 * 107.92665 * 359.75461 * 8 7 6 11 11 C 1.50705 * 109.47007 * 239.99975 * 2 1 3 12 12 O 1.21276 * 119.99803 * 239.99906 * 11 2 1 13 13 N 1.34772 * 119.99649 * 60.00448 * 11 2 1 14 14 C 1.46501 * 119.99754 * 179.97438 * 13 11 2 15 15 C 1.53144 * 109.43632 * 119.97174 * 14 13 11 16 16 C 1.53705 * 108.87665 * 66.17526 * 15 14 13 17 17 H 1.08993 * 112.10190 * 188.25154 * 16 15 14 18 18 C 1.54604 * 107.83373 * 312.23427 * 16 15 14 19 19 C 1.54309 * 104.75561 * 88.66223 * 18 16 15 20 20 C 1.54611 * 104.74948 * 0.02562 * 19 18 16 21 21 H 1.08997 * 112.19252 * 146.79758 * 20 19 18 22 22 C 1.53148 * 109.43514 * 240.19670 * 14 13 11 23 23 N 1.48295 * 104.26054 * 25.13763 * 20 19 18 24 24 C 1.36928 * 128.20949 * 138.42947 * 23 20 19 25 25 H 1.08002 * 120.00119 * 195.29513 * 24 23 20 26 26 C 1.38818 * 120.00211 * 15.29484 * 24 23 20 27 27 N 1.31611 * 119.99835 * 9.25011 * 26 24 23 28 28 Si 1.86795 * 119.99919 * 189.24729 * 26 24 23 29 29 H 1.48495 * 109.47362 * 0.02562 * 28 26 24 30 30 H 1.48506 * 109.47117 * 120.00134 * 28 26 24 31 31 H 1.48506 * 109.47283 * 239.99663 * 28 26 24 32 32 H 1.09004 * 109.46961 * 59.99627 * 1 2 3 33 33 H 1.09001 * 109.46945 * 179.97438 * 1 2 3 34 34 H 1.08992 * 109.47097 * 300.00288 * 1 2 3 35 35 H 1.09001 * 109.47295 * 175.00215 * 4 2 1 36 36 H 1.08998 * 109.47565 * 54.99565 * 4 2 1 37 37 H 1.08000 * 125.90073 * 0.02562 * 6 5 4 38 38 H 1.08995 * 109.47096 * 89.96977 * 9 8 7 39 39 H 1.08993 * 109.46842 * 209.97349 * 9 8 7 40 40 H 1.09003 * 109.46927 * 329.97384 * 9 8 7 41 41 H 1.08000 * 126.12642 * 180.24230 * 10 8 7 42 42 H 0.97000 * 120.00841 * 359.97438 * 13 11 2 43 43 H 1.09005 * 109.43323 * 0.06215 * 14 13 11 44 44 H 1.08999 * 109.57165 * 185.99389 * 15 14 13 45 45 H 1.09002 * 109.57051 * 306.35907 * 15 14 13 46 46 H 1.09002 * 110.38564 * 207.48705 * 18 16 15 47 47 H 1.09011 * 110.37972 * 329.73186 * 18 16 15 48 48 H 1.09003 * 110.37790 * 118.81864 * 19 18 16 49 49 H 1.09000 * 110.38463 * 241.18510 * 19 18 16 50 50 H 1.09002 * 109.56885 * 53.64204 * 22 14 13 51 51 H 1.08998 * 109.56746 * 174.00418 * 22 14 13 52 52 H 0.96993 * 120.00184 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6413 0.0569 2.4766 6 6 0.4574 -0.1031 3.2039 7 7 0.4705 0.7471 4.1984 8 7 1.6648 1.4765 4.1348 9 6 2.0802 2.5324 5.0615 10 6 2.3678 1.0307 3.0726 11 6 2.0324 -0.7104 -1.2305 12 8 2.7296 -1.6965 -1.1192 13 7 1.7068 -0.2499 -2.4545 14 6 2.1956 -0.9402 -3.6507 15 6 1.0042 -1.4220 -4.4836 16 6 0.2473 -0.1979 -5.0234 17 1 -0.6913 -0.4749 -5.5032 18 6 0.0349 0.7836 -3.8479 19 6 1.2956 1.6734 -3.8463 20 6 2.1510 1.1463 -5.0213 21 1 2.7190 1.9404 -5.5058 22 6 3.0501 0.0221 -4.4810 23 7 1.1670 0.5215 -5.9381 24 6 1.1196 0.5912 -7.3048 25 1 0.2217 0.3000 -7.8295 26 6 2.2257 1.0360 -8.0159 27 7 3.3747 1.2169 -7.4000 28 14 2.0833 1.3776 -9.8468 29 1 0.6957 1.0986 -10.2960 30 1 2.4120 2.8014 -10.1117 31 1 3.0291 0.5052 -10.5882 32 1 -0.3633 0.5139 -0.8900 33 1 -0.3633 -1.0277 -0.0005 34 1 -0.3633 0.5138 0.8899 35 1 3.1264 -0.7995 1.2056 36 1 1.6054 -1.7199 1.2952 37 1 -0.3310 -0.8075 2.9833 38 1 2.6429 2.0926 5.8848 39 1 2.7081 3.2512 4.5353 40 1 1.1984 3.0390 5.4538 41 1 3.3358 1.3884 2.7541 42 1 1.1489 0.5386 -2.5436 43 1 2.8004 -1.7969 -3.3534 44 1 1.3619 -2.0267 -5.3169 45 1 0.3381 -2.0165 -3.8583 46 1 -0.8565 1.3885 -4.0147 47 1 -0.0480 0.2379 -2.9079 48 1 1.0245 2.7161 -4.0123 49 1 1.8351 1.5657 -2.9053 50 1 3.8323 0.4497 -3.8537 51 1 3.5015 -0.5166 -5.3141 52 1 4.1475 1.5280 -7.8968 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001266653734.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:37:53 Heat of formation + Delta-G solvation = 134.640604 kcal Electronic energy + Delta-G solvation = -31870.288481 eV Core-core repulsion = 27874.998818 eV Total energy + Delta-G solvation = -3995.289663 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -41.46672 -41.03622 -38.56683 -35.16759 -34.15860 -33.13728 -32.12877 -31.32211 -30.46825 -30.11550 -28.94849 -27.65264 -25.99865 -24.77490 -23.35768 -23.22708 -21.36074 -21.19614 -20.34387 -19.88039 -19.56443 -18.98335 -17.41832 -17.05273 -16.48114 -15.73785 -15.22127 -14.97947 -14.86467 -14.64384 -14.24045 -13.86381 -13.69991 -13.55068 -13.21577 -13.03739 -12.95836 -12.89675 -12.79570 -12.62281 -12.37202 -12.19859 -11.97919 -11.79447 -11.64405 -11.52625 -11.25408 -11.07174 -10.94043 -10.92110 -10.65009 -10.62348 -10.35038 -10.25749 -10.03474 -9.70566 -9.62166 -9.48607 -9.35923 -9.24002 -8.63931 -8.50618 -8.11585 -6.84169 -5.79997 -3.14719 1.67830 2.30283 2.60084 3.04416 3.36152 3.43267 3.44887 3.75843 4.27422 4.43954 4.63299 4.79036 4.87574 4.89117 4.94315 5.04434 5.06928 5.14910 5.32421 5.34295 5.43252 5.44062 5.46547 5.62715 5.64486 5.69589 5.76977 5.80195 5.84311 5.88849 5.99840 6.04549 6.07005 6.15474 6.21721 6.25258 6.33010 6.47831 6.54152 6.56602 6.60479 6.68651 6.78923 6.81021 6.90391 7.03050 7.17742 7.49085 7.51939 7.54658 7.72276 8.01732 8.19723 8.68600 9.10387 9.72507 10.50964 11.32593 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.024319 B = 0.002337 C = 0.002304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1151.097364 B =11976.413217 C =12147.612921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.106 4.106 3 H 0.091 0.909 4 C -0.020 4.020 5 C -0.228 4.228 6 C 0.054 3.946 7 N -0.301 5.301 8 N -0.380 5.380 9 C 0.103 3.897 10 C 0.054 3.946 11 C 0.498 3.502 12 O -0.558 6.558 13 N -0.736 5.736 14 C 0.141 3.859 15 C -0.137 4.137 16 C 0.150 3.850 17 H 0.067 0.933 18 C -0.163 4.163 19 C -0.173 4.173 20 C 0.183 3.817 21 H 0.110 0.890 22 C -0.123 4.123 23 N -0.583 5.583 24 C -0.223 4.223 25 H 0.076 0.924 26 C -0.005 4.005 27 N -0.911 5.911 28 Si 0.909 3.091 29 H -0.280 1.280 30 H -0.291 1.291 31 H -0.291 1.291 32 H 0.057 0.943 33 H 0.061 0.939 34 H 0.067 0.933 35 H 0.075 0.925 36 H 0.076 0.924 37 H 0.181 0.819 38 H 0.072 0.928 39 H 0.087 0.913 40 H 0.087 0.913 41 H 0.173 0.827 42 H 0.427 0.573 43 H 0.082 0.918 44 H 0.072 0.928 45 H 0.047 0.953 46 H 0.059 0.941 47 H 0.081 0.919 48 H 0.058 0.942 49 H 0.077 0.923 50 H 0.042 0.958 51 H 0.084 0.916 52 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.605 2.082 21.034 21.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.127 4.127 3 H 0.109 0.891 4 C -0.059 4.059 5 C -0.239 4.239 6 C -0.132 4.132 7 N -0.123 5.123 8 N -0.162 5.162 9 C -0.039 4.039 10 C -0.091 4.091 11 C 0.284 3.716 12 O -0.437 6.437 13 N -0.408 5.408 14 C 0.037 3.963 15 C -0.178 4.178 16 C 0.042 3.958 17 H 0.085 0.915 18 C -0.202 4.202 19 C -0.213 4.213 20 C 0.076 3.924 21 H 0.128 0.872 22 C -0.163 4.163 23 N -0.304 5.304 24 C -0.351 4.351 25 H 0.093 0.907 26 C -0.202 4.202 27 N -0.557 5.557 28 Si 0.740 3.260 29 H -0.205 1.205 30 H -0.218 1.218 31 H -0.218 1.218 32 H 0.076 0.924 33 H 0.080 0.920 34 H 0.086 0.914 35 H 0.094 0.906 36 H 0.095 0.905 37 H 0.198 0.802 38 H 0.091 0.909 39 H 0.105 0.895 40 H 0.106 0.894 41 H 0.190 0.810 42 H 0.286 0.714 43 H 0.100 0.900 44 H 0.091 0.909 45 H 0.066 0.934 46 H 0.078 0.922 47 H 0.099 0.901 48 H 0.077 0.923 49 H 0.095 0.905 50 H 0.061 0.939 51 H 0.103 0.897 52 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -3.612 2.098 21.959 22.352 hybrid contribution 0.326 0.240 -1.671 1.719 sum -3.286 2.338 20.288 20.685 Atomic orbital electron populations 1.21829 0.93291 1.02653 1.02456 1.21306 0.97517 1.00640 0.93284 0.89128 1.19649 1.01386 0.97187 0.87641 1.20131 0.97003 1.04039 1.02747 1.23823 0.98290 0.98230 0.92859 1.77345 1.02375 1.09476 1.23089 1.48434 1.14729 1.30139 1.22923 1.21830 1.01535 0.88069 0.92464 1.22380 0.98852 0.97718 0.90180 1.20829 0.80294 0.84726 0.85704 1.90631 1.38801 1.26963 1.87281 1.49076 1.53153 1.33269 1.05313 1.21059 0.95457 0.95873 0.83864 1.22499 0.97352 0.98944 0.99000 1.21523 0.93782 0.90509 0.90015 0.91456 1.23312 0.98114 0.98897 0.99913 1.23436 0.97372 0.99373 1.01105 1.21479 0.89656 0.94583 0.86702 0.87209 1.22367 0.97119 0.98418 0.98439 1.45169 1.29339 1.54864 1.01009 1.19026 0.97368 1.38971 0.79781 0.90668 1.24838 0.94998 1.02507 0.97850 1.69867 0.99928 1.51282 1.34645 0.86094 0.77299 0.77570 0.85038 1.20530 1.21792 1.21825 0.92394 0.92006 0.91394 0.90591 0.90524 0.80158 0.90915 0.89486 0.89400 0.80998 0.71388 0.90034 0.90948 0.93417 0.92230 0.90149 0.92321 0.90512 0.93920 0.89745 0.93719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.43 8.81 37.16 0.33 -1.10 16 2 C -0.11 -1.20 2.71 -91.77 -0.25 -1.45 16 3 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 4 C -0.02 -0.21 4.52 -27.88 -0.13 -0.34 16 5 C -0.23 -2.28 4.78 -105.05 -0.50 -2.78 16 6 C 0.05 0.55 10.63 -17.36 -0.18 0.37 16 7 N -0.30 -3.43 12.58 30.62 0.39 -3.04 16 8 N -0.38 -3.51 4.01 -68.16 -0.27 -3.79 16 9 C 0.10 0.52 11.47 59.85 0.69 1.21 16 10 C 0.05 0.49 11.40 -17.22 -0.20 0.29 16 11 C 0.50 7.64 7.15 -10.99 -0.08 7.56 16 12 O -0.56 -10.49 15.25 5.56 0.08 -10.40 16 13 N -0.74 -11.52 2.67 -53.66 -0.14 -11.66 16 14 C 0.14 2.62 3.15 -67.78 -0.21 2.41 16 15 C -0.14 -2.54 5.49 -26.29 -0.14 -2.68 16 16 C 0.15 2.89 4.32 -65.72 -0.28 2.61 16 17 H 0.07 1.28 8.14 -51.93 -0.42 0.85 16 18 C -0.16 -2.62 5.75 -25.20 -0.14 -2.77 16 19 C -0.17 -3.00 5.76 -25.20 -0.15 -3.14 16 20 C 0.18 3.99 3.13 -65.70 -0.21 3.78 16 21 H 0.11 2.78 6.36 -51.93 -0.33 2.45 16 22 C -0.12 -2.58 5.41 -26.26 -0.14 -2.72 16 23 N -0.58 -13.65 2.82 -152.71 -0.43 -14.08 16 24 C -0.22 -5.85 10.38 -15.06 -0.16 -6.01 16 25 H 0.08 1.94 7.85 -52.49 -0.41 1.53 16 26 C 0.00 -0.13 5.42 -17.43 -0.09 -0.22 16 27 N -0.91 -25.07 10.60 55.49 0.59 -24.48 16 28 Si 0.91 21.30 29.56 -169.99 -5.03 16.28 16 29 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 30 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 31 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 32 H 0.06 0.56 6.49 -51.93 -0.34 0.23 16 33 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.07 0.62 6.42 -51.93 -0.33 0.28 16 35 H 0.08 0.89 7.96 -51.93 -0.41 0.47 16 36 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.18 1.45 8.06 -52.49 -0.42 1.02 16 38 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 39 H 0.09 0.25 8.14 -51.93 -0.42 -0.17 16 40 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 41 H 0.17 1.08 8.06 -52.49 -0.42 0.66 16 42 H 0.43 6.15 1.47 -65.44 -0.10 6.06 16 43 H 0.08 1.62 6.90 -51.93 -0.36 1.26 16 44 H 0.07 1.46 8.14 -51.93 -0.42 1.04 16 45 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 46 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 47 H 0.08 1.14 4.08 -51.92 -0.21 0.93 16 48 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 49 H 0.08 1.20 5.27 -51.93 -0.27 0.92 16 50 H 0.04 0.86 8.14 -51.93 -0.42 0.43 16 51 H 0.08 2.04 8.00 -51.93 -0.42 1.63 16 52 H 0.25 6.82 8.31 -40.82 -0.34 6.49 16 LS Contribution 392.02 15.07 5.91 5.91 Total: -1.00 -31.79 392.02 -8.99 -40.79 By element: Atomic # 1 Polarization: 17.72 SS G_CDS: -8.23 Total: 9.49 kcal Atomic # 6 Polarization: -3.15 SS G_CDS: -1.85 Total: -5.01 kcal Atomic # 7 Polarization: -57.18 SS G_CDS: 0.13 Total: -57.05 kcal Atomic # 8 Polarization: -10.49 SS G_CDS: 0.08 Total: -10.40 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.03 Total: 16.28 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -31.79 -8.99 -40.79 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266653734.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 175.428 kcal (2) G-P(sol) polarization free energy of solvation -31.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 143.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.995 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.788 kcal (6) G-S(sol) free energy of system = (1) + (5) 134.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds