Wall clock time and date at job start Wed Apr 1 2020 04:37:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08999 * 109.47218 * 2 1 4 4 C 1.53000 * 109.47011 * 120.00381 * 2 1 3 5 5 C 1.50701 * 109.46855 * 295.00047 * 4 2 1 6 6 C 1.39866 * 126.04287 * 90.02297 * 5 4 2 7 7 N 1.30841 * 108.20457 * 179.97438 * 6 5 4 8 8 N 1.40089 * 108.20315 * 0.02562 * 7 6 5 9 9 C 1.46502 * 126.03535 * 180.02562 * 8 7 6 10 10 C 1.34947 * 107.92665 * 359.75461 * 8 7 6 11 11 C 1.50705 * 109.47007 * 239.99975 * 2 1 3 12 12 O 1.21276 * 119.99803 * 239.99906 * 11 2 1 13 13 N 1.34772 * 119.99649 * 60.00448 * 11 2 1 14 14 C 1.46501 * 119.99754 * 179.97438 * 13 11 2 15 15 C 1.53144 * 109.43632 * 119.97174 * 14 13 11 16 16 C 1.53705 * 108.87665 * 66.17526 * 15 14 13 17 17 H 1.08993 * 112.10190 * 188.25154 * 16 15 14 18 18 C 1.54604 * 107.83373 * 312.23427 * 16 15 14 19 19 C 1.54309 * 104.75561 * 88.66223 * 18 16 15 20 20 C 1.54611 * 104.74948 * 0.02562 * 19 18 16 21 21 H 1.08997 * 112.19252 * 146.79758 * 20 19 18 22 22 C 1.53148 * 109.43514 * 240.19670 * 14 13 11 23 23 N 1.48295 * 104.26054 * 25.13763 * 20 19 18 24 24 C 1.36928 * 128.20949 * 138.42947 * 23 20 19 25 25 H 1.08002 * 120.00119 * 195.29513 * 24 23 20 26 26 C 1.38818 * 120.00211 * 15.29484 * 24 23 20 27 27 N 1.31611 * 119.99835 * 9.25011 * 26 24 23 28 28 Si 1.86795 * 119.99919 * 189.24729 * 26 24 23 29 29 H 1.48495 * 109.47362 * 0.02562 * 28 26 24 30 30 H 1.48506 * 109.47117 * 120.00134 * 28 26 24 31 31 H 1.48506 * 109.47283 * 239.99663 * 28 26 24 32 32 H 1.09004 * 109.46961 * 59.99627 * 1 2 3 33 33 H 1.09001 * 109.46945 * 179.97438 * 1 2 3 34 34 H 1.08992 * 109.47097 * 300.00288 * 1 2 3 35 35 H 1.09001 * 109.47295 * 175.00215 * 4 2 1 36 36 H 1.08998 * 109.47565 * 54.99565 * 4 2 1 37 37 H 1.08000 * 125.90073 * 0.02562 * 6 5 4 38 38 H 1.08995 * 109.47096 * 89.96977 * 9 8 7 39 39 H 1.08993 * 109.46842 * 209.97349 * 9 8 7 40 40 H 1.09003 * 109.46927 * 329.97384 * 9 8 7 41 41 H 1.08000 * 126.12642 * 180.24230 * 10 8 7 42 42 H 0.97000 * 120.00841 * 359.97438 * 13 11 2 43 43 H 1.09005 * 109.43323 * 0.06215 * 14 13 11 44 44 H 1.08999 * 109.57165 * 185.99389 * 15 14 13 45 45 H 1.09002 * 109.57051 * 306.35907 * 15 14 13 46 46 H 1.09002 * 110.38564 * 207.48705 * 18 16 15 47 47 H 1.09011 * 110.37972 * 329.73186 * 18 16 15 48 48 H 1.09003 * 110.37790 * 118.81864 * 19 18 16 49 49 H 1.09000 * 110.38463 * 241.18510 * 19 18 16 50 50 H 1.09002 * 109.56885 * 53.64204 * 22 14 13 51 51 H 1.08998 * 109.56746 * 174.00418 * 22 14 13 52 52 H 0.96993 * 120.00184 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6413 0.0569 2.4766 6 6 0.4574 -0.1031 3.2039 7 7 0.4705 0.7471 4.1984 8 7 1.6648 1.4765 4.1348 9 6 2.0802 2.5324 5.0615 10 6 2.3678 1.0307 3.0726 11 6 2.0324 -0.7104 -1.2305 12 8 2.7296 -1.6965 -1.1192 13 7 1.7068 -0.2499 -2.4545 14 6 2.1956 -0.9402 -3.6507 15 6 1.0042 -1.4220 -4.4836 16 6 0.2473 -0.1979 -5.0234 17 1 -0.6913 -0.4749 -5.5032 18 6 0.0349 0.7836 -3.8479 19 6 1.2956 1.6734 -3.8463 20 6 2.1510 1.1463 -5.0213 21 1 2.7190 1.9404 -5.5058 22 6 3.0501 0.0221 -4.4810 23 7 1.1670 0.5215 -5.9381 24 6 1.1196 0.5912 -7.3048 25 1 0.2217 0.3000 -7.8295 26 6 2.2257 1.0360 -8.0159 27 7 3.3747 1.2169 -7.4000 28 14 2.0833 1.3776 -9.8468 29 1 0.6957 1.0986 -10.2960 30 1 2.4120 2.8014 -10.1117 31 1 3.0291 0.5052 -10.5882 32 1 -0.3633 0.5139 -0.8900 33 1 -0.3633 -1.0277 -0.0005 34 1 -0.3633 0.5138 0.8899 35 1 3.1264 -0.7995 1.2056 36 1 1.6054 -1.7199 1.2952 37 1 -0.3310 -0.8075 2.9833 38 1 2.6429 2.0926 5.8848 39 1 2.7081 3.2512 4.5353 40 1 1.1984 3.0390 5.4538 41 1 3.3358 1.3884 2.7541 42 1 1.1489 0.5386 -2.5436 43 1 2.8004 -1.7969 -3.3534 44 1 1.3619 -2.0267 -5.3169 45 1 0.3381 -2.0165 -3.8583 46 1 -0.8565 1.3885 -4.0147 47 1 -0.0480 0.2379 -2.9079 48 1 1.0245 2.7161 -4.0123 49 1 1.8351 1.5657 -2.9053 50 1 3.8323 0.4497 -3.8537 51 1 3.5015 -0.5166 -5.3141 52 1 4.1475 1.5280 -7.8968 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001266653734.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:37:52 Heat of formation + Delta-G solvation = 117.097222 kcal Electronic energy + Delta-G solvation = -31871.049219 eV Core-core repulsion = 27874.998818 eV Total energy + Delta-G solvation = -3996.050401 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -42.57887 -42.06520 -39.89276 -36.08691 -35.79732 -33.95886 -33.72850 -32.68436 -31.92073 -31.22964 -30.58210 -28.28168 -26.81823 -26.41859 -24.84391 -24.48339 -22.72279 -21.91572 -21.49788 -21.14763 -20.96007 -20.33396 -18.90391 -18.22348 -17.44083 -16.80667 -16.55545 -16.21022 -16.04761 -15.96672 -15.34532 -15.10574 -14.78826 -14.62814 -14.55632 -14.46363 -14.17757 -13.96907 -13.75660 -13.60417 -13.48897 -13.31848 -13.24361 -13.16338 -12.88653 -12.83479 -12.75829 -12.58261 -12.39337 -12.06918 -11.99636 -11.92570 -11.88670 -11.67963 -11.38978 -11.36616 -11.14420 -10.99369 -10.57564 -10.50218 -10.27842 -9.54877 -9.21636 -8.72833 -7.81324 -5.15655 1.01596 1.47727 1.49632 1.58432 1.76228 1.82163 1.86768 2.50810 2.52512 3.36399 3.56994 3.70636 3.87547 3.95626 4.00033 4.02014 4.13541 4.19908 4.21084 4.31334 4.33224 4.39862 4.44519 4.48183 4.50953 4.59756 4.63955 4.71387 4.73943 4.77408 4.83188 4.95801 4.98847 4.99701 5.04894 5.05490 5.11929 5.17635 5.29145 5.31675 5.32683 5.37217 5.47060 5.47431 5.58011 5.64138 5.78045 5.83277 5.89509 6.20666 6.29892 6.74327 6.80771 7.12459 7.43667 7.78921 8.59004 9.29773 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.024319 B = 0.002337 C = 0.002304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1151.097364 B =11976.413217 C =12147.612921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.096 4.096 3 H 0.108 0.892 4 C -0.010 4.010 5 C -0.242 4.242 6 C 0.049 3.951 7 N -0.336 5.336 8 N -0.382 5.382 9 C 0.093 3.907 10 C 0.058 3.942 11 C 0.498 3.502 12 O -0.593 6.593 13 N -0.728 5.728 14 C 0.154 3.846 15 C -0.130 4.130 16 C 0.141 3.859 17 H 0.073 0.927 18 C -0.150 4.150 19 C -0.163 4.163 20 C 0.176 3.824 21 H 0.070 0.930 22 C -0.113 4.113 23 N -0.604 5.604 24 C -0.229 4.229 25 H 0.076 0.924 26 C -0.059 4.059 27 N -0.935 5.935 28 Si 0.968 3.032 29 H -0.269 1.269 30 H -0.295 1.295 31 H -0.299 1.299 32 H 0.064 0.936 33 H 0.061 0.939 34 H 0.079 0.921 35 H 0.064 0.936 36 H 0.067 0.933 37 H 0.195 0.805 38 H 0.083 0.917 39 H 0.112 0.888 40 H 0.089 0.911 41 H 0.198 0.802 42 H 0.433 0.567 43 H 0.067 0.933 44 H 0.046 0.954 45 H 0.073 0.927 46 H 0.078 0.922 47 H 0.108 0.892 48 H 0.065 0.935 49 H 0.099 0.901 50 H 0.044 0.956 51 H 0.040 0.960 52 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.242 3.112 23.118 23.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.117 4.117 3 H 0.126 0.874 4 C -0.050 4.050 5 C -0.253 4.253 6 C -0.136 4.136 7 N -0.158 5.158 8 N -0.164 5.164 9 C -0.047 4.047 10 C -0.088 4.088 11 C 0.287 3.713 12 O -0.474 6.474 13 N -0.401 5.401 14 C 0.049 3.951 15 C -0.171 4.171 16 C 0.034 3.966 17 H 0.091 0.909 18 C -0.189 4.189 19 C -0.202 4.202 20 C 0.069 3.931 21 H 0.088 0.912 22 C -0.153 4.153 23 N -0.325 5.325 24 C -0.358 4.358 25 H 0.094 0.906 26 C -0.253 4.253 27 N -0.583 5.583 28 Si 0.798 3.202 29 H -0.194 1.194 30 H -0.222 1.222 31 H -0.226 1.226 32 H 0.083 0.917 33 H 0.080 0.920 34 H 0.098 0.902 35 H 0.083 0.917 36 H 0.086 0.914 37 H 0.211 0.789 38 H 0.101 0.899 39 H 0.130 0.870 40 H 0.108 0.892 41 H 0.215 0.785 42 H 0.295 0.705 43 H 0.085 0.915 44 H 0.065 0.935 45 H 0.092 0.908 46 H 0.096 0.904 47 H 0.125 0.875 48 H 0.084 0.916 49 H 0.116 0.884 50 H 0.062 0.938 51 H 0.059 0.941 52 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -5.295 3.143 24.085 24.860 hybrid contribution 0.888 -0.113 -2.264 2.435 sum -4.406 3.030 21.821 22.467 Atomic orbital electron populations 1.21831 0.91696 1.03022 1.03379 1.21313 0.98665 1.00787 0.90975 0.87402 1.19491 1.00535 0.96928 0.87996 1.20048 0.97515 1.04897 1.02871 1.24089 0.98760 0.98197 0.92552 1.77296 1.03944 1.10557 1.23993 1.48766 1.14087 1.30287 1.23297 1.22150 1.02156 0.87737 0.92630 1.22815 0.99431 0.96983 0.89608 1.21561 0.79230 0.84196 0.86344 1.90627 1.40307 1.28730 1.87730 1.48915 1.53230 1.33285 1.04659 1.20679 0.95021 0.94810 0.84596 1.22401 0.97482 0.98716 0.98485 1.21777 0.93149 0.91190 0.90485 0.90932 1.23228 0.98051 0.98092 0.99514 1.23320 0.97200 0.99851 0.99833 1.21381 0.90030 0.93704 0.87941 0.91239 1.22173 0.97430 0.98403 0.97336 1.45370 1.30401 1.55981 1.00777 1.19313 0.97152 1.37769 0.81581 0.90647 1.25521 0.94999 1.03460 1.01307 1.70058 1.00222 1.52537 1.35493 0.85166 0.77360 0.76703 0.80978 1.19365 1.22174 1.22630 0.91662 0.91999 0.90242 0.91707 0.91413 0.78873 0.89861 0.86991 0.89244 0.78481 0.70522 0.91488 0.93534 0.90841 0.90372 0.87469 0.91593 0.88355 0.93762 0.94088 0.94593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.28 8.81 71.98 0.63 -1.64 16 2 C -0.10 -1.89 2.71 -11.54 -0.03 -1.92 16 3 H 0.11 1.82 8.14 -2.39 -0.02 1.80 16 4 C -0.01 -0.21 4.52 29.85 0.13 -0.07 16 5 C -0.24 -4.29 4.78 -20.14 -0.10 -4.38 16 6 C 0.05 0.91 10.63 85.23 0.91 1.81 16 7 N -0.34 -7.03 12.58 -57.02 -0.72 -7.75 16 8 N -0.38 -6.14 4.01 -369.57 -1.48 -7.62 16 9 C 0.09 0.71 11.47 127.77 1.47 2.17 16 10 C 0.06 0.88 11.40 83.54 0.95 1.84 16 11 C 0.50 14.18 7.15 87.66 0.63 14.81 16 12 O -0.59 -21.70 15.25 -3.02 -0.05 -21.74 16 13 N -0.73 -21.10 2.67 -442.07 -1.18 -22.28 16 14 C 0.15 5.64 3.15 45.09 0.14 5.78 16 15 C -0.13 -4.71 5.49 30.88 0.17 -4.54 16 16 C 0.14 5.22 4.32 45.42 0.20 5.42 16 17 H 0.07 2.61 8.14 -2.39 -0.02 2.59 16 18 C -0.15 -4.31 5.75 31.58 0.18 -4.13 16 19 C -0.16 -5.26 5.76 31.59 0.18 -5.08 16 20 C 0.18 7.77 3.13 45.45 0.14 7.91 16 21 H 0.07 3.64 6.36 -2.39 -0.02 3.63 16 22 C -0.11 -4.85 5.41 30.90 0.17 -4.68 16 23 N -0.60 -28.42 2.82 -637.04 -1.80 -30.22 16 24 C -0.23 -12.17 10.38 84.04 0.87 -11.30 16 25 H 0.08 3.90 7.85 -2.91 -0.02 3.88 16 26 C -0.06 -3.21 5.42 84.86 0.46 -2.75 16 27 N -0.94 -53.61 10.60 21.65 0.23 -53.38 16 28 Si 0.97 44.78 29.56 68.60 2.03 46.81 16 29 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 30 H -0.29 -13.67 7.11 99.48 0.71 -12.96 16 31 H -0.30 -14.06 7.11 99.48 0.71 -13.35 16 32 H 0.06 0.96 6.49 -2.38 -0.02 0.94 16 33 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 34 H 0.08 1.15 6.42 -2.39 -0.02 1.13 16 35 H 0.06 1.42 7.96 -2.39 -0.02 1.40 16 36 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 37 H 0.19 2.74 8.06 -2.91 -0.02 2.72 16 38 H 0.08 0.46 8.14 -2.39 -0.02 0.44 16 39 H 0.11 0.27 8.14 -2.39 -0.02 0.26 16 40 H 0.09 0.65 8.14 -2.39 -0.02 0.64 16 41 H 0.20 1.80 8.06 -2.91 -0.02 1.77 16 42 H 0.43 11.03 1.47 -115.84 -0.17 10.85 16 43 H 0.07 2.69 6.90 -2.38 -0.02 2.67 16 44 H 0.05 1.90 8.14 -2.39 -0.02 1.89 16 45 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 46 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 47 H 0.11 2.55 4.08 -2.38 -0.01 2.54 16 48 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 49 H 0.10 2.76 5.27 -2.39 -0.01 2.74 16 50 H 0.04 1.82 8.14 -2.39 -0.02 1.80 16 51 H 0.04 2.09 8.00 -2.39 -0.02 2.07 16 52 H 0.24 13.83 8.31 -92.71 -0.77 13.06 16 Total: -1.00 -71.68 392.02 4.89 -66.78 By element: Atomic # 1 Polarization: 29.41 SS G_CDS: 0.75 Total: 30.16 kcal Atomic # 6 Polarization: -7.86 SS G_CDS: 7.11 Total: -0.75 kcal Atomic # 7 Polarization: -116.31 SS G_CDS: -4.95 Total: -121.26 kcal Atomic # 8 Polarization: -21.70 SS G_CDS: -0.05 Total: -21.74 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 2.03 Total: 46.81 kcal Total: -71.68 4.89 -66.78 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266653734.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 183.878 kcal (2) G-P(sol) polarization free energy of solvation -71.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 112.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.781 kcal (6) G-S(sol) free energy of system = (1) + (5) 117.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds