Wall clock time and date at job start Wed Apr 1 2020 03:56:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09004 * 109.47293 * 2 1 4 4 N 1.46507 * 109.47052 * 120.00041 * 2 1 3 5 5 C 1.36936 * 119.99620 * 274.99963 * 4 2 1 6 6 H 1.07997 * 120.00846 * 359.97438 * 5 4 2 7 7 C 1.38817 * 119.99658 * 179.97438 * 5 4 2 8 8 N 1.31614 * 119.99993 * 179.97438 * 7 5 4 9 9 Si 1.86799 * 119.99958 * 0.02562 * 7 5 4 10 10 H 1.48499 * 109.47448 * 89.99666 * 9 7 5 11 11 H 1.48501 * 109.46894 * 210.00079 * 9 7 5 12 12 H 1.48501 * 109.47155 * 329.99346 * 9 7 5 13 13 C 1.52999 * 109.47286 * 239.99881 * 2 1 3 14 14 C 1.53033 * 109.46088 * 180.02562 * 13 2 1 15 15 C 1.53198 * 109.31098 * 178.60077 * 14 13 2 16 16 N 1.46924 * 108.76295 * 54.65635 * 15 14 13 17 17 C 1.34781 * 120.62734 * 126.36227 * 16 15 14 18 18 O 1.21568 * 119.99442 * 174.98781 * 17 16 15 19 19 C 1.47708 * 120.00248 * 354.98269 * 17 16 15 20 20 N 1.32203 * 126.67532 * 5.45012 * 19 17 16 21 21 N 1.28849 * 110.14797 * 179.81036 * 20 19 17 22 22 H 0.97000 * 124.97837 * 180.11284 * 21 20 19 23 23 C 1.34315 * 110.04312 * 0.38756 * 21 20 19 24 24 C 1.35582 * 107.21247 * 359.83523 * 23 21 20 25 25 C 1.50381 * 124.61817 * 179.79896 * 24 23 21 26 26 C 1.53470 * 108.28465 * 343.75145 * 25 24 23 27 27 C 1.53102 * 109.51246 * 49.48775 * 26 25 24 28 28 C 1.50701 * 128.90905 * 179.88222 * 23 21 20 29 29 C 1.46924 * 118.73971 * 306.38278 * 16 15 14 30 30 C 1.53043 * 109.45817 * 59.97127 * 13 2 1 31 31 H 1.09006 * 109.46961 * 300.00251 * 1 2 3 32 32 H 1.08991 * 109.47451 * 180.02562 * 1 2 3 33 33 H 1.08998 * 109.47016 * 59.99649 * 1 2 3 34 34 H 0.96993 * 120.00187 * 95.00057 * 4 2 1 35 35 H 0.97003 * 120.00501 * 180.02562 * 8 7 5 36 36 H 1.08998 * 109.46062 * 300.00255 * 13 2 1 37 37 H 1.09001 * 109.50043 * 298.56759 * 14 13 2 38 38 H 1.09006 * 109.49979 * 58.66372 * 14 13 2 39 39 H 1.09000 * 109.59982 * 294.86601 * 15 14 13 40 40 H 1.08996 * 109.70084 * 174.50623 * 15 14 13 41 41 H 1.08995 * 109.70128 * 103.45372 * 25 24 23 42 42 H 1.09006 * 109.70269 * 224.05483 * 25 24 23 43 43 H 1.09004 * 109.46602 * 169.50118 * 26 25 24 44 44 H 1.08999 * 109.46933 * 289.47360 * 26 25 24 45 45 H 1.09002 * 109.44423 * 50.00142 * 27 26 25 46 46 H 1.08999 * 109.44590 * 169.89761 * 27 26 25 47 47 H 1.09004 * 109.69570 * 43.59471 * 28 23 21 48 48 H 1.09001 * 109.72497 * 283.03270 * 28 23 21 49 49 H 1.09003 * 109.58451 * 293.82151 * 29 16 15 50 50 H 1.09004 * 109.70442 * 173.46535 * 29 16 15 51 51 H 1.08999 * 109.49544 * 301.34163 * 30 13 2 52 52 H 1.09004 * 109.49237 * 61.40228 * 30 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0183 -0.6907 1.1962 5 6 2.1491 -0.0075 2.3758 6 1 1.8927 1.0405 2.4242 7 6 2.6113 -0.6620 3.5093 8 7 2.7375 -0.0053 4.6429 9 14 3.0555 -2.4744 3.4254 10 1 4.4884 -2.6167 3.0621 11 1 2.8153 -3.1047 4.7485 12 1 2.2159 -3.1429 2.3991 13 6 2.0400 -0.7213 -1.2492 14 6 3.5704 -0.7217 -1.2486 15 6 4.0773 -1.4749 -2.4826 16 7 3.4747 -0.8770 -3.6818 17 6 4.2483 -0.4575 -4.7026 18 8 3.7351 -0.0489 -5.7261 19 6 5.7197 -0.4940 -4.5778 20 7 6.4146 -1.0014 -3.5741 21 7 7.6768 -0.8669 -3.7954 22 1 8.3809 -1.1657 -3.1988 23 6 7.8746 -0.2471 -4.9704 24 6 6.6529 0.0088 -5.4997 25 6 6.4193 0.6995 -6.8150 26 6 7.7193 1.4036 -7.2267 27 6 8.8896 0.4227 -7.1153 28 6 9.1738 0.1247 -5.6375 29 6 2.0129 -0.7447 -3.7468 30 6 1.5292 0.0000 -2.4986 31 1 -0.3633 0.5139 0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 -0.3633 0.5139 -0.8899 34 1 2.2490 -1.6317 1.1527 35 1 3.0608 -0.4625 5.4350 36 1 1.6766 -1.7489 -1.2490 37 1 3.9345 0.3054 -1.2740 38 1 3.9338 -1.2147 -0.3469 39 1 3.7904 -2.5242 -2.4138 40 1 5.1628 -1.3960 -2.5410 41 1 6.1436 -0.0349 -7.5717 42 1 5.6215 1.4344 -6.7076 43 1 7.6337 1.7515 -8.2561 44 1 7.8952 2.2550 -6.5692 45 1 8.6364 -0.5041 -7.6301 46 1 9.7757 0.8615 -7.5738 47 1 9.8775 -0.7040 -5.5588 48 1 9.5933 1.0094 -5.1586 49 1 1.5576 -1.7346 -3.7812 50 1 1.7340 -0.1831 -4.6384 51 1 0.4394 0.0206 -2.4867 52 1 1.9123 1.0204 -2.5118 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001267190427.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:56:50 Heat of formation + Delta-G solvation = 44.905116 kcal Electronic energy + Delta-G solvation = -31364.604823 eV Core-core repulsion = 27365.423937 eV Total energy + Delta-G solvation = -3999.180886 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -43.12120 -39.91720 -37.88127 -37.25349 -35.45301 -33.21626 -32.67070 -31.18532 -30.81933 -30.25712 -29.77996 -28.66104 -25.69670 -24.35576 -24.11371 -22.95373 -22.74518 -22.31348 -20.74476 -19.81170 -19.37268 -18.98996 -18.05875 -17.53389 -16.77498 -16.27599 -15.82918 -15.17905 -14.88187 -14.67475 -14.33971 -14.26134 -14.17249 -13.94898 -13.81464 -13.49264 -13.31804 -13.27748 -13.19028 -12.79628 -12.49067 -12.43988 -12.35470 -12.23466 -11.67489 -11.29852 -11.26632 -11.17957 -11.06907 -10.96953 -10.95748 -10.78016 -10.74669 -10.31435 -10.13804 -10.04542 -9.91427 -9.57216 -9.54342 -9.52418 -8.90370 -8.88043 -8.50034 -7.22142 -5.74119 -3.08371 1.38991 1.85640 2.50344 3.05640 3.35408 3.37690 3.40767 3.45752 4.10361 4.23664 4.41254 4.49967 4.60982 4.80745 4.84872 4.93784 4.99964 5.08710 5.10498 5.13998 5.21148 5.25982 5.32285 5.44307 5.51301 5.53124 5.55925 5.66217 5.67583 5.73764 5.76398 5.78825 5.92831 5.96868 6.01306 6.03368 6.05992 6.10277 6.20800 6.28842 6.35057 6.42523 6.45646 6.54279 6.63719 6.71363 6.87723 6.92344 7.10046 7.40668 7.69505 8.03637 8.18696 8.45426 9.24729 9.97439 10.18202 11.44670 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.014373 B = 0.002734 C = 0.002430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1947.693868 B =10240.792574 C =11519.404387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.183 3.817 3 H 0.053 0.947 4 N -0.747 5.747 5 C -0.236 4.236 6 H 0.089 0.911 7 C 0.002 3.998 8 N -0.937 5.937 9 Si 0.882 3.118 10 H -0.285 1.285 11 H -0.293 1.293 12 H -0.277 1.277 13 C -0.095 4.095 14 C -0.119 4.119 15 C 0.071 3.929 16 N -0.593 5.593 17 C 0.601 3.399 18 O -0.539 6.539 19 C 0.004 3.996 20 N -0.259 5.259 21 N -0.376 5.376 22 H 0.444 0.556 23 C 0.013 3.987 24 C -0.144 4.144 25 C -0.041 4.041 26 C -0.122 4.122 27 C -0.114 4.114 28 C -0.049 4.049 29 C 0.113 3.887 30 C -0.127 4.127 31 H 0.055 0.945 32 H 0.044 0.956 33 H 0.042 0.958 34 H 0.359 0.641 35 H 0.258 0.742 36 H 0.066 0.934 37 H 0.063 0.937 38 H 0.082 0.918 39 H 0.061 0.939 40 H 0.136 0.864 41 H 0.076 0.924 42 H 0.083 0.917 43 H 0.070 0.930 44 H 0.065 0.935 45 H 0.068 0.932 46 H 0.073 0.927 47 H 0.079 0.921 48 H 0.084 0.916 49 H 0.066 0.934 50 H 0.090 0.910 51 H 0.079 0.921 52 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.261 -1.348 -25.443 28.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.074 3.926 3 H 0.071 0.929 4 N -0.390 5.390 5 C -0.366 4.366 6 H 0.107 0.893 7 C -0.193 4.193 8 N -0.585 5.585 9 Si 0.713 3.287 10 H -0.212 1.212 11 H -0.219 1.219 12 H -0.203 1.203 13 C -0.114 4.114 14 C -0.157 4.157 15 C -0.052 4.052 16 N -0.325 5.325 17 C 0.387 3.613 18 O -0.415 6.415 19 C -0.155 4.155 20 N -0.094 5.094 21 N -0.088 5.088 22 H 0.289 0.711 23 C -0.114 4.114 24 C -0.154 4.154 25 C -0.079 4.079 26 C -0.159 4.159 27 C -0.152 4.152 28 C -0.087 4.087 29 C -0.009 4.009 30 C -0.165 4.165 31 H 0.074 0.926 32 H 0.063 0.937 33 H 0.061 0.939 34 H 0.192 0.808 35 H 0.068 0.932 36 H 0.084 0.916 37 H 0.082 0.918 38 H 0.100 0.900 39 H 0.079 0.921 40 H 0.153 0.847 41 H 0.094 0.906 42 H 0.101 0.899 43 H 0.089 0.911 44 H 0.084 0.916 45 H 0.087 0.913 46 H 0.091 0.909 47 H 0.097 0.903 48 H 0.102 0.898 49 H 0.084 0.916 50 H 0.108 0.892 51 H 0.098 0.902 52 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 11.825 -1.479 -24.793 27.509 hybrid contribution 0.691 -1.265 0.183 1.453 sum 12.516 -2.743 -24.610 27.746 Atomic orbital electron populations 1.22461 0.99081 1.00737 1.00354 1.20195 0.91712 0.95607 0.85117 0.92891 1.42787 1.79777 1.09265 1.07162 1.19076 1.36340 0.95438 0.85748 0.89338 1.24655 1.01758 0.97336 0.95588 1.69699 1.53041 1.35498 1.00273 0.86576 0.78393 0.87008 0.76737 1.21168 1.21917 1.20324 1.21448 0.95369 0.99766 0.94822 1.21844 0.95538 1.01192 0.97160 1.22843 1.02611 0.96234 0.83542 1.47979 1.06952 1.59810 1.17760 1.16977 0.83613 0.77537 0.83151 1.90748 1.73625 1.48287 1.28843 1.21615 0.94505 1.05574 0.93813 1.73508 0.89934 1.22480 1.23456 1.43244 1.06187 1.42837 1.16491 0.71135 1.21172 0.97969 1.02774 0.89510 1.19845 0.90241 1.05929 0.99413 1.19966 0.97539 0.98791 0.91628 1.21677 0.94275 0.98209 1.01788 1.21561 0.98936 1.00371 0.94362 1.20249 0.91013 1.01844 0.95629 1.21665 0.78834 1.00842 0.99565 1.22003 1.01156 0.99716 0.93656 0.92608 0.93733 0.93942 0.80778 0.93180 0.91586 0.91813 0.89959 0.92073 0.84720 0.90604 0.89892 0.91143 0.91633 0.91310 0.90882 0.90256 0.89775 0.91580 0.89187 0.90237 0.91498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.91 9.14 37.16 0.34 -2.57 16 2 C 0.18 3.46 2.47 -67.93 -0.17 3.29 16 3 H 0.05 1.07 8.08 -51.93 -0.42 0.66 16 4 N -0.75 -17.32 4.21 -53.42 -0.22 -17.54 16 5 C -0.24 -6.59 10.41 -15.06 -0.16 -6.75 16 6 H 0.09 2.67 8.06 -52.49 -0.42 2.25 16 7 C 0.00 0.06 5.50 -17.43 -0.10 -0.04 16 8 N -0.94 -29.49 13.97 55.49 0.78 -28.72 16 9 Si 0.88 22.05 27.74 -169.99 -4.71 17.33 16 10 H -0.28 -7.02 7.11 56.52 0.40 -6.61 16 11 H -0.29 -7.47 7.11 56.52 0.40 -7.07 16 12 H -0.28 -6.53 6.52 56.52 0.37 -6.16 16 13 C -0.09 -1.46 1.79 -90.58 -0.16 -1.63 16 14 C -0.12 -1.87 5.22 -26.61 -0.14 -2.01 16 15 C 0.07 0.98 6.33 -3.71 -0.02 0.96 16 16 N -0.59 -8.38 2.97 -173.93 -0.52 -8.89 16 17 C 0.60 9.09 7.70 -12.39 -0.10 9.00 16 18 O -0.54 -9.03 15.34 5.31 0.08 -8.95 16 19 C 0.00 0.05 6.89 -82.99 -0.57 -0.52 16 20 N -0.26 -3.16 8.60 33.28 0.29 -2.87 16 21 N -0.38 -3.36 6.82 33.42 0.23 -3.14 16 22 H 0.44 2.40 8.96 -190.21 -1.71 0.70 16 23 C 0.01 0.12 7.12 -82.45 -0.59 -0.47 16 24 C -0.14 -1.65 5.99 -104.88 -0.63 -2.28 16 25 C -0.04 -0.41 5.51 -27.79 -0.15 -0.56 16 26 C -0.12 -0.82 5.91 -26.44 -0.16 -0.98 16 27 C -0.11 -0.60 5.89 -26.47 -0.16 -0.76 16 28 C -0.05 -0.26 6.31 -27.67 -0.17 -0.43 16 29 C 0.11 1.46 6.41 -3.71 -0.02 1.44 16 30 C -0.13 -1.68 5.04 -26.61 -0.13 -1.81 16 31 H 0.05 1.09 8.14 -51.93 -0.42 0.66 16 32 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.04 0.62 6.40 -51.93 -0.33 0.28 16 34 H 0.36 8.23 5.44 -40.82 -0.22 8.01 16 35 H 0.26 7.76 8.31 -40.82 -0.34 7.42 16 36 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 37 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 38 H 0.08 1.43 7.41 -51.93 -0.38 1.05 16 39 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 40 H 0.14 1.86 3.69 -117.28 -0.43 1.42 16 41 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 42 H 0.08 0.94 7.79 -51.93 -0.40 0.53 16 43 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 44 H 0.06 0.45 8.12 -51.93 -0.42 0.03 16 45 H 0.07 0.39 8.12 -51.93 -0.42 -0.03 16 46 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 47 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 48 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 49 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 50 H 0.09 1.18 7.04 -51.93 -0.37 0.81 16 51 H 0.08 0.96 6.36 -51.93 -0.33 0.62 16 52 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 LS Contribution 395.50 15.07 5.96 5.96 Total: -1.00 -34.27 395.50 -11.32 -45.58 By element: Atomic # 1 Polarization: 17.47 SS G_CDS: -10.10 Total: 7.37 kcal Atomic # 6 Polarization: -3.04 SS G_CDS: -3.09 Total: -6.13 kcal Atomic # 7 Polarization: -61.71 SS G_CDS: 0.55 Total: -61.16 kcal Atomic # 8 Polarization: -9.03 SS G_CDS: 0.08 Total: -8.95 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -4.71 Total: 17.33 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -34.27 -11.32 -45.58 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267190427.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.487 kcal (2) G-P(sol) polarization free energy of solvation -34.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.582 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds