Wall clock time and date at job start Wed Apr 1 2020 03:57:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 109.47087 * 2 1 4 4 N 1.46505 * 109.46853 * 119.98856 * 2 1 3 5 5 C 1.36934 * 120.00666 * 275.00789 * 4 2 1 6 6 H 1.08001 * 119.99391 * 359.97438 * 5 4 2 7 7 C 1.38807 * 120.00164 * 180.02562 * 5 4 2 8 8 N 1.31619 * 120.00297 * 359.97438 * 7 5 4 9 9 Si 1.86805 * 119.99945 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.46890 * 359.97438 * 9 7 5 11 11 H 1.48504 * 109.46961 * 119.99715 * 9 7 5 12 12 H 1.48496 * 109.47215 * 239.99739 * 9 7 5 13 13 C 1.52997 * 109.47672 * 239.99298 * 2 1 3 14 14 C 1.53044 * 109.45798 * 60.00223 * 13 2 1 15 15 C 1.53190 * 109.31151 * 181.38568 * 14 13 2 16 16 N 1.46920 * 108.77659 * 305.36496 * 15 14 13 17 17 C 1.34775 * 120.63424 * 233.58408 * 16 15 14 18 18 O 1.21517 * 120.00461 * 172.29034 * 17 16 15 19 19 C 1.48189 * 119.99649 * 352.29741 * 17 16 15 20 20 C 1.39031 * 119.68554 * 170.48064 * 19 17 16 21 21 C 1.39462 * 118.95242 * 179.77325 * 20 19 17 22 22 N 1.39196 * 120.83246 * 180.24601 * 21 20 19 23 23 C 1.46496 * 119.99746 * 180.25444 * 22 21 20 24 24 C 1.46498 * 119.99991 * 0.24988 * 22 21 20 25 25 C 1.39412 * 118.33316 * 0.49079 * 21 20 19 26 26 C 1.38232 * 119.26684 * 359.74860 * 25 21 20 27 27 N 1.31646 * 120.99106 * 0.02562 * 26 25 21 28 28 C 1.46930 * 118.74050 * 53.60804 * 16 15 14 29 29 C 1.53037 * 109.46131 * 180.02562 * 13 2 1 30 30 H 1.09004 * 109.46289 * 60.00828 * 1 2 3 31 31 H 1.08994 * 109.46895 * 180.02562 * 1 2 3 32 32 H 1.08991 * 109.47381 * 300.00961 * 1 2 3 33 33 H 0.97000 * 119.99450 * 95.00324 * 4 2 1 34 34 H 0.97000 * 120.00359 * 180.02562 * 8 7 5 35 35 H 1.08995 * 109.44841 * 300.03880 * 13 2 1 36 36 H 1.08998 * 109.49739 * 301.33890 * 14 13 2 37 37 H 1.09002 * 109.49786 * 61.43441 * 14 13 2 38 38 H 1.09007 * 109.58727 * 65.15136 * 15 14 13 39 39 H 1.08993 * 109.58737 * 185.57427 * 15 14 13 40 40 H 1.08001 * 120.52907 * 0.02562 * 20 19 17 41 41 H 1.09003 * 109.47033 * 90.00129 * 23 22 21 42 42 H 1.09001 * 109.46739 * 209.99664 * 23 22 21 43 43 H 1.08998 * 109.47250 * 329.99665 * 23 22 21 44 44 H 1.09004 * 109.47350 * 59.99957 * 24 22 21 45 45 H 1.08997 * 109.47352 * 180.02562 * 24 22 21 46 46 H 1.08999 * 109.47553 * 300.00594 * 24 22 21 47 47 H 1.08002 * 120.36723 * 179.72890 * 25 21 20 48 48 H 1.08004 * 119.50375 * 180.02562 * 26 25 21 49 49 H 1.09003 * 109.58756 * 186.60398 * 28 16 15 50 50 H 1.08994 * 109.70202 * 66.24873 * 28 16 15 51 51 H 1.09000 * 109.50287 * 298.57013 * 29 13 2 52 52 H 1.09003 * 109.49708 * 58.62809 * 29 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6904 1.1964 5 6 2.1489 -0.0072 2.3759 6 1 1.8924 1.0408 2.4241 7 6 2.6121 -0.6613 3.5092 8 7 2.9252 -1.9384 3.4503 9 14 2.7910 0.2709 5.1181 10 1 2.3769 1.6833 4.9205 11 1 1.9306 -0.3576 6.1526 12 1 4.2080 0.2282 5.5601 13 6 2.0401 -0.7214 -1.2491 14 6 1.5299 0.0002 -2.4986 15 6 2.0138 -0.7446 -3.7468 16 7 3.4755 -0.8774 -3.6812 17 6 4.2496 -0.4590 -4.7021 18 8 5.4586 -0.4438 -4.5814 19 6 3.6261 -0.0173 -5.9718 20 6 4.4064 0.5970 -6.9448 21 6 3.8049 1.0024 -8.1360 22 7 4.5501 1.6165 -9.1386 23 6 3.8984 2.0400 -10.3804 24 6 5.9859 1.8394 -8.9519 25 6 2.4376 0.7817 -8.2953 26 6 1.7291 0.1690 -7.2788 27 7 2.3261 -0.2067 -6.1672 28 6 4.0775 -1.4756 -2.4818 29 6 3.5705 -0.7217 -1.2484 30 1 -0.3632 0.5137 -0.8901 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8898 33 1 2.2490 -1.6316 1.1529 34 1 3.2485 -2.3956 4.2424 35 1 1.6761 -1.7487 -1.2490 36 1 0.4402 0.0213 -2.4871 37 1 1.9139 1.0203 -2.5119 38 1 1.5582 -1.7343 -3.7814 39 1 1.7376 -0.1816 -4.6382 40 1 5.4626 0.7542 -6.7826 41 1 3.5401 3.0637 -10.2718 42 1 4.6138 1.9906 -11.2013 43 1 3.0565 1.3808 -10.5920 44 1 6.4856 0.8825 -8.8011 45 1 6.3956 2.3283 -9.8357 46 1 6.1448 2.4735 -8.0797 47 1 1.9374 1.0865 -9.2027 48 1 0.6697 -0.0042 -7.3983 49 1 5.1631 -1.3949 -2.5387 50 1 3.7924 -2.5253 -2.4121 51 1 3.9347 0.3053 -1.2739 52 1 3.9338 -1.2141 -0.3463 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001267222087.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:57:23 Heat of formation + Delta-G solvation = 38.075359 kcal Electronic energy + Delta-G solvation = -30707.204998 eV Core-core repulsion = 26707.727952 eV Total energy + Delta-G solvation = -3999.477046 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.03855 -39.54907 -37.77912 -37.30530 -35.29815 -32.83530 -32.04977 -31.63370 -30.61339 -30.55529 -28.82045 -28.12927 -26.06829 -25.51525 -23.95164 -23.54133 -22.49506 -22.35461 -20.85597 -19.70815 -19.19183 -17.78847 -17.39822 -16.96248 -16.34055 -15.87313 -15.75155 -15.51993 -15.23204 -14.86408 -14.73519 -14.39956 -13.92939 -13.88899 -13.70803 -13.63192 -13.50129 -13.18282 -13.08476 -12.85643 -12.72432 -12.53537 -12.41623 -12.02994 -11.87746 -11.78342 -11.53016 -11.07350 -10.96439 -10.82215 -10.79062 -10.65301 -10.32138 -10.15737 -10.07155 -9.97797 -9.69185 -9.56165 -9.45705 -8.87903 -8.83077 -8.36503 -8.10789 -6.85929 -5.69380 -2.96640 0.52869 1.12014 2.47849 2.74066 3.09298 3.47612 3.53401 3.55385 3.72119 4.01466 4.32001 4.39611 4.63416 4.65655 4.69777 4.76891 4.89195 4.99454 5.07047 5.12721 5.24176 5.25514 5.29462 5.29911 5.34703 5.47953 5.54245 5.61889 5.63152 5.66284 5.87014 5.87924 6.02073 6.08115 6.12622 6.24443 6.28575 6.36046 6.45130 6.52162 6.59161 6.59893 6.63337 6.74117 6.79953 6.85476 6.99078 7.08074 7.23997 7.49926 7.66773 7.78000 8.22587 8.49816 9.60826 10.20439 10.55263 11.53489 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.022218 B = 0.002097 C = 0.002022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1259.953062 B =13350.706953 C =13844.509405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.177 3.823 3 H 0.043 0.957 4 N -0.723 5.723 5 C -0.231 4.231 6 H 0.069 0.931 7 C -0.016 4.016 8 N -0.934 5.934 9 Si 0.903 3.097 10 H -0.281 1.281 11 H -0.293 1.293 12 H -0.293 1.293 13 C -0.091 4.091 14 C -0.129 4.129 15 C 0.071 3.929 16 N -0.582 5.582 17 C 0.565 3.435 18 O -0.543 6.543 19 C 0.127 3.873 20 C -0.186 4.186 21 C 0.244 3.756 22 N -0.626 5.626 23 C 0.090 3.910 24 C 0.089 3.911 25 C -0.236 4.236 26 C 0.134 3.866 27 N -0.489 5.489 28 C 0.107 3.893 29 C -0.119 4.119 30 H 0.038 0.962 31 H 0.045 0.955 32 H 0.049 0.951 33 H 0.383 0.617 34 H 0.253 0.747 35 H 0.066 0.934 36 H 0.075 0.925 37 H 0.059 0.941 38 H 0.061 0.939 39 H 0.148 0.852 40 H 0.145 0.855 41 H 0.053 0.947 42 H 0.070 0.930 43 H 0.071 0.929 44 H 0.060 0.940 45 H 0.077 0.923 46 H 0.060 0.940 47 H 0.136 0.864 48 H 0.162 0.838 49 H 0.087 0.913 50 H 0.068 0.932 51 H 0.060 0.940 52 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.693 6.294 -31.943 32.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.067 3.933 3 H 0.061 0.939 4 N -0.364 5.364 5 C -0.362 4.362 6 H 0.087 0.913 7 C -0.212 4.212 8 N -0.583 5.583 9 Si 0.735 3.265 10 H -0.207 1.207 11 H -0.220 1.220 12 H -0.220 1.220 13 C -0.110 4.110 14 C -0.168 4.168 15 C -0.051 4.051 16 N -0.313 5.313 17 C 0.352 3.648 18 O -0.420 6.420 19 C -0.009 4.009 20 C -0.212 4.212 21 C 0.133 3.867 22 N -0.337 5.337 23 C -0.053 4.053 24 C -0.054 4.054 25 C -0.261 4.261 26 C -0.024 4.024 27 N -0.205 5.205 28 C -0.015 4.015 29 C -0.158 4.158 30 H 0.057 0.943 31 H 0.064 0.936 32 H 0.068 0.932 33 H 0.217 0.783 34 H 0.063 0.937 35 H 0.085 0.915 36 H 0.094 0.906 37 H 0.078 0.922 38 H 0.079 0.921 39 H 0.164 0.836 40 H 0.162 0.838 41 H 0.071 0.929 42 H 0.089 0.911 43 H 0.090 0.910 44 H 0.079 0.921 45 H 0.096 0.904 46 H 0.079 0.921 47 H 0.154 0.846 48 H 0.180 0.820 49 H 0.106 0.894 50 H 0.086 0.914 51 H 0.079 0.921 52 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -0.367 6.117 -31.204 31.800 hybrid contribution 0.523 0.543 0.385 0.846 sum 0.156 6.660 -30.819 31.531 Atomic orbital electron populations 1.22479 0.99594 1.00688 0.99726 1.20233 0.91524 0.95300 0.86208 0.93881 1.42430 1.78042 1.10638 1.05302 1.19275 1.35787 0.93781 0.87397 0.91335 1.24708 1.02560 0.95986 0.97950 1.69664 1.51373 1.08610 1.28617 0.86163 0.77241 0.78785 0.84307 1.20682 1.22036 1.21997 1.21399 0.95046 0.99834 0.94723 1.22060 1.00881 0.99451 0.94377 1.23098 0.77967 1.02141 1.01903 1.48008 1.08180 1.58512 1.16557 1.17926 0.86092 0.78002 0.82820 1.90756 1.13705 1.55513 1.82054 1.20943 0.89741 0.95842 0.94407 1.21530 1.02136 1.04464 0.93043 1.17966 0.90947 0.89814 0.87937 1.46314 1.08072 1.63370 1.15965 1.21753 0.98561 0.99869 0.85094 1.21746 0.79478 1.01634 1.02530 1.21777 0.92974 1.08585 1.02791 1.22677 1.00274 0.91794 0.87636 1.67633 1.09444 1.21613 1.21767 1.21806 0.99286 0.96604 0.83759 1.21858 0.95854 1.00909 0.97143 0.94293 0.93630 0.93175 0.78347 0.93705 0.91535 0.90633 0.92233 0.92067 0.83556 0.83772 0.92870 0.91078 0.91021 0.92118 0.90410 0.92109 0.84625 0.82045 0.89423 0.91413 0.92147 0.89154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.02 9.14 37.16 0.34 -2.68 16 2 C 0.18 3.55 2.47 -67.93 -0.17 3.38 16 3 H 0.04 0.91 8.08 -51.93 -0.42 0.49 16 4 N -0.72 -18.05 4.41 -53.42 -0.24 -18.29 16 5 C -0.23 -6.46 9.93 -15.06 -0.15 -6.61 16 6 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 7 C -0.02 -0.48 5.50 -17.43 -0.10 -0.57 16 8 N -0.93 -28.42 13.06 55.49 0.72 -27.69 16 9 Si 0.90 22.82 29.55 -169.99 -5.02 17.80 16 10 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 11 H -0.29 -7.45 7.11 56.52 0.40 -7.05 16 12 H -0.29 -7.45 7.11 56.52 0.40 -7.05 16 13 C -0.09 -1.52 1.79 -90.58 -0.16 -1.68 16 14 C -0.13 -1.81 5.04 -26.61 -0.13 -1.94 16 15 C 0.07 0.93 5.89 -3.72 -0.02 0.91 16 16 N -0.58 -8.73 2.97 -173.76 -0.52 -9.25 16 17 C 0.57 8.83 7.65 -12.17 -0.09 8.74 16 18 O -0.54 -9.82 15.79 5.35 0.08 -9.74 16 19 C 0.13 1.64 6.58 -83.06 -0.55 1.10 16 20 C -0.19 -2.09 8.90 -38.83 -0.35 -2.44 16 21 C 0.24 2.17 6.57 -83.62 -0.55 1.62 16 22 N -0.63 -4.18 3.40 -187.37 -0.64 -4.81 16 23 C 0.09 0.33 10.19 59.84 0.61 0.94 16 24 C 0.09 0.48 9.44 59.85 0.56 1.04 16 25 C -0.24 -1.74 9.27 -39.15 -0.36 -2.11 16 26 C 0.13 1.09 11.17 -17.63 -0.20 0.89 16 27 N -0.49 -5.46 6.12 -9.89 -0.06 -5.52 16 28 C 0.11 1.69 6.44 -3.71 -0.02 1.66 16 29 C -0.12 -2.09 5.22 -26.61 -0.14 -2.22 16 30 H 0.04 0.59 6.40 -51.93 -0.33 0.26 16 31 H 0.04 0.84 8.14 -51.93 -0.42 0.41 16 32 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 33 H 0.38 10.15 7.58 -40.82 -0.31 9.84 16 34 H 0.25 7.48 8.31 -40.82 -0.34 7.14 16 35 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 36 H 0.08 0.97 6.36 -51.93 -0.33 0.64 16 37 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 38 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.15 1.81 4.00 -85.06 -0.34 1.46 16 40 H 0.14 1.64 6.51 -52.49 -0.34 1.30 16 41 H 0.05 0.18 8.14 -51.93 -0.42 -0.25 16 42 H 0.07 0.16 7.92 -51.93 -0.41 -0.25 16 43 H 0.07 0.22 6.25 -51.93 -0.32 -0.11 16 44 H 0.06 0.35 8.00 -51.93 -0.42 -0.07 16 45 H 0.08 0.24 7.79 -51.93 -0.40 -0.16 16 46 H 0.06 0.36 7.98 -51.93 -0.41 -0.06 16 47 H 0.14 0.64 6.26 -52.49 -0.33 0.31 16 48 H 0.16 0.80 8.06 -52.48 -0.42 0.38 16 49 H 0.09 1.45 7.00 -51.93 -0.36 1.09 16 50 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 51 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 52 H 0.09 1.80 7.40 -51.93 -0.38 1.42 16 LS Contribution 404.69 15.07 6.10 6.10 Total: -1.00 -33.78 404.69 -9.51 -43.29 By element: Atomic # 1 Polarization: 16.56 SS G_CDS: -8.47 Total: 8.09 kcal Atomic # 6 Polarization: 1.51 SS G_CDS: -1.48 Total: 0.03 kcal Atomic # 7 Polarization: -64.84 SS G_CDS: -0.72 Total: -65.57 kcal Atomic # 8 Polarization: -9.82 SS G_CDS: 0.08 Total: -9.74 kcal Atomic # 14 Polarization: 22.82 SS G_CDS: -5.02 Total: 17.80 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -33.78 -9.51 -43.29 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267222087.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.362 kcal (2) G-P(sol) polarization free energy of solvation -33.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.287 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds