Wall clock time and date at job start Wed Apr 1 2020 03:57:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 109.47087 * 2 1 4 4 N 1.46505 * 109.46853 * 119.98856 * 2 1 3 5 5 C 1.36934 * 120.00666 * 275.00789 * 4 2 1 6 6 H 1.08001 * 119.99391 * 359.97438 * 5 4 2 7 7 C 1.38807 * 120.00164 * 180.02562 * 5 4 2 8 8 N 1.31619 * 120.00297 * 359.97438 * 7 5 4 9 9 Si 1.86805 * 119.99945 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.46890 * 359.97438 * 9 7 5 11 11 H 1.48504 * 109.46961 * 119.99715 * 9 7 5 12 12 H 1.48496 * 109.47215 * 239.99739 * 9 7 5 13 13 C 1.52997 * 109.47672 * 239.99298 * 2 1 3 14 14 C 1.53044 * 109.45798 * 60.00223 * 13 2 1 15 15 C 1.53190 * 109.31151 * 181.38568 * 14 13 2 16 16 N 1.46920 * 108.77659 * 305.36496 * 15 14 13 17 17 C 1.34775 * 120.63424 * 233.58408 * 16 15 14 18 18 O 1.21517 * 120.00461 * 172.29034 * 17 16 15 19 19 C 1.48189 * 119.99649 * 352.29741 * 17 16 15 20 20 C 1.39031 * 119.68554 * 170.48064 * 19 17 16 21 21 C 1.39462 * 118.95242 * 179.77325 * 20 19 17 22 22 N 1.39196 * 120.83246 * 180.24601 * 21 20 19 23 23 C 1.46496 * 119.99746 * 180.25444 * 22 21 20 24 24 C 1.46498 * 119.99991 * 0.24988 * 22 21 20 25 25 C 1.39412 * 118.33316 * 0.49079 * 21 20 19 26 26 C 1.38232 * 119.26684 * 359.74860 * 25 21 20 27 27 N 1.31646 * 120.99106 * 0.02562 * 26 25 21 28 28 C 1.46930 * 118.74050 * 53.60804 * 16 15 14 29 29 C 1.53037 * 109.46131 * 180.02562 * 13 2 1 30 30 H 1.09004 * 109.46289 * 60.00828 * 1 2 3 31 31 H 1.08994 * 109.46895 * 180.02562 * 1 2 3 32 32 H 1.08991 * 109.47381 * 300.00961 * 1 2 3 33 33 H 0.97000 * 119.99450 * 95.00324 * 4 2 1 34 34 H 0.97000 * 120.00359 * 180.02562 * 8 7 5 35 35 H 1.08995 * 109.44841 * 300.03880 * 13 2 1 36 36 H 1.08998 * 109.49739 * 301.33890 * 14 13 2 37 37 H 1.09002 * 109.49786 * 61.43441 * 14 13 2 38 38 H 1.09007 * 109.58727 * 65.15136 * 15 14 13 39 39 H 1.08993 * 109.58737 * 185.57427 * 15 14 13 40 40 H 1.08001 * 120.52907 * 0.02562 * 20 19 17 41 41 H 1.09003 * 109.47033 * 90.00129 * 23 22 21 42 42 H 1.09001 * 109.46739 * 209.99664 * 23 22 21 43 43 H 1.08998 * 109.47250 * 329.99665 * 23 22 21 44 44 H 1.09004 * 109.47350 * 59.99957 * 24 22 21 45 45 H 1.08997 * 109.47352 * 180.02562 * 24 22 21 46 46 H 1.08999 * 109.47553 * 300.00594 * 24 22 21 47 47 H 1.08002 * 120.36723 * 179.72890 * 25 21 20 48 48 H 1.08004 * 119.50375 * 180.02562 * 26 25 21 49 49 H 1.09003 * 109.58756 * 186.60398 * 28 16 15 50 50 H 1.08994 * 109.70202 * 66.24873 * 28 16 15 51 51 H 1.09000 * 109.50287 * 298.57013 * 29 13 2 52 52 H 1.09003 * 109.49708 * 58.62809 * 29 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6904 1.1964 5 6 2.1489 -0.0072 2.3759 6 1 1.8924 1.0408 2.4241 7 6 2.6121 -0.6613 3.5092 8 7 2.9252 -1.9384 3.4503 9 14 2.7910 0.2709 5.1181 10 1 2.3769 1.6833 4.9205 11 1 1.9306 -0.3576 6.1526 12 1 4.2080 0.2282 5.5601 13 6 2.0401 -0.7214 -1.2491 14 6 1.5299 0.0002 -2.4986 15 6 2.0138 -0.7446 -3.7468 16 7 3.4755 -0.8774 -3.6812 17 6 4.2496 -0.4590 -4.7021 18 8 5.4586 -0.4438 -4.5814 19 6 3.6261 -0.0173 -5.9718 20 6 4.4064 0.5970 -6.9448 21 6 3.8049 1.0024 -8.1360 22 7 4.5501 1.6165 -9.1386 23 6 3.8984 2.0400 -10.3804 24 6 5.9859 1.8394 -8.9519 25 6 2.4376 0.7817 -8.2953 26 6 1.7291 0.1690 -7.2788 27 7 2.3261 -0.2067 -6.1672 28 6 4.0775 -1.4756 -2.4818 29 6 3.5705 -0.7217 -1.2484 30 1 -0.3632 0.5137 -0.8901 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8898 33 1 2.2490 -1.6316 1.1529 34 1 3.2485 -2.3956 4.2424 35 1 1.6761 -1.7487 -1.2490 36 1 0.4402 0.0213 -2.4871 37 1 1.9139 1.0203 -2.5119 38 1 1.5582 -1.7343 -3.7814 39 1 1.7376 -0.1816 -4.6382 40 1 5.4626 0.7542 -6.7826 41 1 3.5401 3.0637 -10.2718 42 1 4.6138 1.9906 -11.2013 43 1 3.0565 1.3808 -10.5920 44 1 6.4856 0.8825 -8.8011 45 1 6.3956 2.3283 -9.8357 46 1 6.1448 2.4735 -8.0797 47 1 1.9374 1.0865 -9.2027 48 1 0.6697 -0.0042 -7.3983 49 1 5.1631 -1.3949 -2.5387 50 1 3.7924 -2.5253 -2.4121 51 1 3.9347 0.3053 -1.2739 52 1 3.9338 -1.2141 -0.3463 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267222087.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:57:22 Heat of formation + Delta-G solvation = 17.333634 kcal Electronic energy + Delta-G solvation = -30708.104427 eV Core-core repulsion = 26707.727952 eV Total energy + Delta-G solvation = -4000.376475 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -41.92888 -40.56468 -39.12837 -37.92869 -36.86997 -34.61365 -33.06047 -32.33735 -32.22111 -31.66646 -29.87675 -29.24833 -27.03733 -26.42059 -25.66004 -24.67625 -23.72701 -23.15959 -22.07111 -21.15771 -20.38132 -19.17309 -18.51109 -18.17083 -17.10574 -16.94440 -16.75626 -16.56224 -16.22738 -16.01585 -15.66090 -15.56051 -15.38631 -15.14727 -14.99155 -14.77435 -14.65661 -14.27072 -14.12317 -13.95189 -13.53090 -13.50488 -13.33701 -13.24191 -13.10030 -12.96611 -12.82225 -12.77052 -12.32505 -12.28417 -12.15387 -12.06660 -11.89021 -11.57027 -11.47087 -11.35938 -11.29807 -11.24479 -10.87705 -10.22671 -9.81723 -9.59327 -8.94162 -8.65797 -7.90890 -5.17209 -0.28471 0.44493 1.46026 1.46742 1.56305 1.72377 1.85990 2.13114 2.57508 2.90721 3.12141 3.42521 3.66981 3.84424 3.86663 3.92347 3.93200 4.08377 4.18224 4.19956 4.27429 4.33959 4.40273 4.45690 4.49310 4.57668 4.60727 4.68108 4.71878 4.74017 4.80789 4.83801 4.85064 4.88389 4.92923 4.98557 5.00705 5.08784 5.11547 5.18861 5.24667 5.28049 5.35343 5.51702 5.51782 5.61304 5.71113 5.89131 6.11707 6.26259 6.32091 6.38969 6.82487 7.11591 7.37865 8.16785 8.39686 9.32719 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.022218 B = 0.002097 C = 0.002022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1259.953062 B =13350.706953 C =13844.509405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.171 3.829 3 H 0.031 0.969 4 N -0.733 5.733 5 C -0.229 4.229 6 H 0.070 0.930 7 C -0.079 4.079 8 N -0.969 5.969 9 Si 0.967 3.033 10 H -0.268 1.268 11 H -0.294 1.294 12 H -0.296 1.296 13 C -0.080 4.080 14 C -0.119 4.119 15 C 0.074 3.926 16 N -0.584 5.584 17 C 0.558 3.442 18 O -0.581 6.581 19 C 0.106 3.894 20 C -0.199 4.199 21 C 0.239 3.761 22 N -0.627 5.627 23 C 0.083 3.917 24 C 0.084 3.916 25 C -0.223 4.223 26 C 0.134 3.866 27 N -0.503 5.503 28 C 0.114 3.886 29 C -0.110 4.110 30 H 0.077 0.923 31 H 0.044 0.956 32 H 0.030 0.970 33 H 0.372 0.628 34 H 0.248 0.752 35 H 0.067 0.933 36 H 0.099 0.901 37 H 0.053 0.947 38 H 0.071 0.929 39 H 0.165 0.835 40 H 0.130 0.870 41 H 0.061 0.939 42 H 0.087 0.913 43 H 0.083 0.917 44 H 0.052 0.948 45 H 0.104 0.896 46 H 0.050 0.950 47 H 0.171 0.829 48 H 0.200 0.800 49 H 0.073 0.927 50 H 0.078 0.922 51 H 0.044 0.956 52 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.033 7.659 -35.234 36.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.063 3.937 3 H 0.049 0.951 4 N -0.373 5.373 5 C -0.361 4.361 6 H 0.088 0.912 7 C -0.271 4.271 8 N -0.620 5.620 9 Si 0.797 3.203 10 H -0.193 1.193 11 H -0.221 1.221 12 H -0.224 1.224 13 C -0.099 4.099 14 C -0.158 4.158 15 C -0.047 4.047 16 N -0.314 5.314 17 C 0.347 3.653 18 O -0.462 6.462 19 C -0.030 4.030 20 C -0.226 4.226 21 C 0.126 3.874 22 N -0.336 5.336 23 C -0.058 4.058 24 C -0.058 4.058 25 C -0.248 4.248 26 C -0.023 4.023 27 N -0.220 5.220 28 C -0.008 4.008 29 C -0.148 4.148 30 H 0.096 0.904 31 H 0.063 0.937 32 H 0.049 0.951 33 H 0.204 0.796 34 H 0.057 0.943 35 H 0.086 0.914 36 H 0.117 0.883 37 H 0.072 0.928 38 H 0.089 0.911 39 H 0.180 0.820 40 H 0.148 0.852 41 H 0.079 0.921 42 H 0.106 0.894 43 H 0.102 0.898 44 H 0.070 0.930 45 H 0.123 0.877 46 H 0.069 0.931 47 H 0.188 0.812 48 H 0.217 0.783 49 H 0.092 0.908 50 H 0.097 0.903 51 H 0.063 0.937 52 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -2.742 7.532 -34.554 35.472 hybrid contribution 1.256 0.195 1.215 1.758 sum -1.487 7.726 -33.339 34.255 Atomic orbital electron populations 1.22321 0.97449 1.00934 1.00686 1.20470 0.92909 0.94498 0.85776 0.95093 1.42604 1.78331 1.10232 1.06126 1.19600 1.34133 0.93924 0.88464 0.91179 1.25471 1.03489 0.96923 1.01211 1.69814 1.53053 1.10056 1.29095 0.85159 0.76647 0.78179 0.80343 1.19296 1.22135 1.22395 1.21293 0.94085 0.99875 0.94695 1.22018 1.02128 0.98684 0.92953 1.23284 0.76568 1.02864 1.01977 1.48101 1.09074 1.58267 1.15975 1.18472 0.85796 0.77234 0.83842 1.90717 1.15392 1.57117 1.82943 1.20512 0.90922 0.98035 0.93508 1.21476 1.01574 1.05330 0.94177 1.18122 0.91921 0.89718 0.87590 1.46601 1.08413 1.62340 1.16286 1.21998 0.99342 1.00437 0.84068 1.21832 0.79269 1.01292 1.03440 1.22150 0.92094 1.06872 1.03661 1.23304 1.01772 0.90598 0.86633 1.67415 1.08408 1.22534 1.23604 1.21609 0.98576 0.96966 0.83682 1.21688 0.96742 0.99705 0.96691 0.90427 0.93695 0.95080 0.79580 0.94262 0.91426 0.88275 0.92833 0.91094 0.81958 0.85217 0.92095 0.89405 0.89838 0.92968 0.87741 0.93114 0.81207 0.78348 0.90846 0.90345 0.93715 0.92274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.40 9.14 71.98 0.66 -4.74 16 2 C 0.17 6.86 2.47 44.99 0.11 6.97 16 3 H 0.03 1.32 8.08 -2.39 -0.02 1.30 16 4 N -0.73 -37.43 4.41 -322.93 -1.42 -38.85 16 5 C -0.23 -13.01 9.93 84.03 0.83 -12.17 16 6 H 0.07 3.89 7.83 -2.91 -0.02 3.86 16 7 C -0.08 -4.65 5.50 84.86 0.47 -4.19 16 8 N -0.97 -60.55 13.06 21.65 0.28 -60.27 16 9 Si 0.97 47.70 29.55 68.60 2.03 49.72 16 10 H -0.27 -12.50 7.11 99.48 0.71 -11.80 16 11 H -0.29 -14.45 7.11 99.48 0.71 -13.74 16 12 H -0.30 -14.70 7.11 99.48 0.71 -13.99 16 13 C -0.08 -2.67 1.79 -10.77 -0.02 -2.69 16 14 C -0.12 -3.12 5.04 30.67 0.15 -2.96 16 15 C 0.07 1.82 5.89 86.36 0.51 2.33 16 16 N -0.58 -17.68 2.97 -821.93 -2.44 -20.12 16 17 C 0.56 18.01 7.65 86.89 0.66 18.67 16 18 O -0.58 -22.37 15.79 -3.77 -0.06 -22.43 16 19 C 0.11 2.71 6.58 41.83 0.28 2.98 16 20 C -0.20 -4.49 8.90 22.76 0.20 -4.28 16 21 C 0.24 3.78 6.57 38.55 0.25 4.04 16 22 N -0.63 -6.96 3.40 -746.71 -2.54 -9.49 16 23 C 0.08 0.32 10.19 127.77 1.30 1.62 16 24 C 0.08 0.82 9.44 127.77 1.21 2.03 16 25 C -0.22 -2.46 9.27 22.55 0.21 -2.25 16 26 C 0.13 1.69 11.17 84.72 0.95 2.63 16 27 N -0.50 -10.20 6.12 -185.21 -1.13 -11.34 16 28 C 0.11 3.75 6.44 86.36 0.56 4.30 16 29 C -0.11 -4.01 5.22 30.67 0.16 -3.85 16 30 H 0.08 2.10 6.40 -2.39 -0.02 2.09 16 31 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 32 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 33 H 0.37 20.42 7.58 -92.71 -0.70 19.72 16 34 H 0.25 15.10 8.31 -92.71 -0.77 14.33 16 35 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 36 H 0.10 2.16 6.36 -2.39 -0.02 2.14 16 37 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 38 H 0.07 1.64 8.14 -2.38 -0.02 1.62 16 39 H 0.16 3.62 4.00 -67.81 -0.27 3.35 16 40 H 0.13 3.18 6.51 -2.91 -0.02 3.16 16 41 H 0.06 0.18 8.14 -2.39 -0.02 0.16 16 42 H 0.09 0.07 7.92 -2.39 -0.02 0.05 16 43 H 0.08 0.13 6.25 -2.39 -0.01 0.12 16 44 H 0.05 0.60 8.00 -2.39 -0.02 0.58 16 45 H 0.10 0.43 7.79 -2.39 -0.02 0.41 16 46 H 0.05 0.60 7.98 -2.39 -0.02 0.58 16 47 H 0.17 0.68 6.26 -2.91 -0.02 0.66 16 48 H 0.20 0.94 8.06 -2.91 -0.02 0.91 16 49 H 0.07 2.61 7.00 -2.39 -0.02 2.59 16 50 H 0.08 2.39 8.14 -2.39 -0.02 2.37 16 51 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 52 H 0.06 2.52 7.40 -2.39 -0.02 2.50 16 Total: -1.00 -76.38 404.69 3.17 -73.21 By element: Atomic # 1 Polarization: 31.16 SS G_CDS: -0.04 Total: 31.12 kcal Atomic # 6 Polarization: -0.05 SS G_CDS: 8.49 Total: 8.44 kcal Atomic # 7 Polarization: -132.82 SS G_CDS: -7.25 Total: -140.07 kcal Atomic # 8 Polarization: -22.37 SS G_CDS: -0.06 Total: -22.43 kcal Atomic # 14 Polarization: 47.70 SS G_CDS: 2.03 Total: 49.72 kcal Total: -76.38 3.17 -73.21 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267222087.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.546 kcal (2) G-P(sol) polarization free energy of solvation -76.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.212 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds