Wall clock time and date at job start Wed Apr 1 2020 03:57:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09003 * 109.46651 * 2 1 4 4 N 1.46500 * 109.47098 * 240.00220 * 2 1 3 5 5 C 1.36939 * 119.99921 * 84.99785 * 4 2 1 6 6 H 1.07989 * 120.00507 * 0.02562 * 5 4 2 7 7 C 1.38817 * 119.99225 * 179.97438 * 5 4 2 8 8 N 1.31609 * 120.00679 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 119.99231 * 180.02562 * 7 5 4 10 10 H 1.48495 * 109.46960 * 90.00552 * 9 7 5 11 11 H 1.48506 * 109.46913 * 209.99956 * 9 7 5 12 12 H 1.48496 * 109.47550 * 330.00238 * 9 7 5 13 13 C 1.52996 * 109.46901 * 119.99841 * 2 1 3 14 14 C 1.53044 * 109.46086 * 60.03088 * 13 2 1 15 15 C 1.53187 * 109.31433 * 178.59954 * 14 13 2 16 16 N 1.46927 * 108.76519 * 54.65477 * 15 14 13 17 17 C 1.34773 * 120.63359 * 126.41176 * 16 15 14 18 18 O 1.21520 * 119.99806 * 352.25077 * 17 16 15 19 19 C 1.48181 * 120.00569 * 172.26187 * 17 16 15 20 20 C 1.39031 * 119.69386 * 170.51491 * 19 17 16 21 21 C 1.39448 * 118.95830 * 179.77785 * 20 19 17 22 22 N 1.39193 * 120.83483 * 180.24343 * 21 20 19 23 23 C 1.46504 * 120.00038 * 180.25088 * 22 21 20 24 24 C 1.46498 * 119.99804 * 0.25303 * 22 21 20 25 25 C 1.39417 * 118.33336 * 0.48867 * 21 20 19 26 26 C 1.38231 * 119.26522 * 359.75216 * 25 21 20 27 27 N 1.31642 * 120.99449 * 0.02562 * 26 25 21 28 28 C 1.46934 * 118.73763 * 306.38248 * 16 15 14 29 29 C 1.53041 * 109.46325 * 299.97245 * 13 2 1 30 30 H 1.09000 * 109.47329 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47025 * 59.99781 * 1 2 3 32 32 H 1.09002 * 109.47284 * 300.00436 * 1 2 3 33 33 H 0.96995 * 119.99508 * 265.00151 * 4 2 1 34 34 H 0.96995 * 120.00405 * 179.97438 * 8 7 5 35 35 H 1.09001 * 109.45925 * 179.97438 * 13 2 1 36 36 H 1.09001 * 109.49754 * 298.56368 * 14 13 2 37 37 H 1.09003 * 109.49985 * 58.65743 * 14 13 2 38 38 H 1.08998 * 109.59818 * 294.86640 * 15 14 13 39 39 H 1.08997 * 109.70418 * 174.50500 * 15 14 13 40 40 H 1.07994 * 120.52099 * 359.97438 * 20 19 17 41 41 H 1.08997 * 109.47080 * 59.99975 * 23 22 21 42 42 H 1.09001 * 109.46920 * 180.02562 * 23 22 21 43 43 H 1.08993 * 109.47136 * 300.00019 * 23 22 21 44 44 H 1.08998 * 109.47404 * 90.00260 * 24 22 21 45 45 H 1.09007 * 109.46854 * 210.00036 * 24 22 21 46 46 H 1.08999 * 109.46964 * 329.99627 * 24 22 21 47 47 H 1.08006 * 120.36856 * 179.73260 * 25 21 20 48 48 H 1.08004 * 119.50535 * 180.02562 * 26 25 21 49 49 H 1.09002 * 109.58466 * 293.82291 * 28 16 15 50 50 H 1.08995 * 109.70045 * 173.46820 * 28 16 15 51 51 H 1.09001 * 109.49707 * 301.34290 * 29 13 2 52 52 H 1.09004 * 109.49103 * 61.40354 * 29 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6906 -1.1962 5 6 2.1491 -0.0074 -2.3758 6 1 1.8927 1.0405 -2.4242 7 6 2.6123 -0.6617 -3.5090 8 7 2.9254 -1.9387 -3.4499 9 14 2.7914 0.2704 -5.1179 10 1 4.1536 0.8554 -5.2021 11 1 2.5815 -0.6609 -6.2555 12 1 1.7814 1.3575 -5.1753 13 6 2.0400 -0.7212 1.2492 14 6 1.5303 -2.1643 1.2486 15 6 2.0714 -2.8932 2.4825 16 7 1.7085 -2.1259 3.6818 17 6 1.0559 -2.7156 4.7030 18 8 0.6379 -3.8502 4.5825 19 6 0.8479 -1.9803 5.9726 20 6 0.0092 -2.5109 6.9462 21 6 -0.1719 -1.8084 8.1372 22 7 -0.9988 -2.3059 9.1403 23 6 -1.1803 -1.5500 10.3821 24 6 -1.6875 -3.5855 8.9543 25 6 0.4919 -0.5927 8.2958 26 6 1.3052 -0.1292 7.2787 27 7 1.4598 -0.8175 6.1673 28 6 2.0711 -0.7035 3.7469 29 6 1.5303 0.0008 2.4987 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 0.5139 0.8899 33 1 2.2490 -1.6317 -1.1526 34 1 3.2487 -2.3960 -4.2419 35 1 3.1300 -0.7215 1.2489 36 1 0.4406 -2.1653 1.2740 37 1 1.8741 -2.6712 0.3470 38 1 3.1563 -2.9725 2.4139 39 1 1.6352 -3.8904 2.5409 40 1 -0.4917 -3.4538 6.7841 41 1 -1.6030 -0.5717 10.1534 42 1 -1.8563 -2.0930 11.0425 43 1 -0.2161 -1.4231 10.8743 44 1 -1.0576 -4.3943 9.3245 45 1 -2.6277 -3.5755 9.5059 46 1 -1.8899 -3.7384 7.8943 47 1 0.3717 -0.0193 9.2031 48 1 1.8216 0.8119 7.3976 49 1 3.1560 -0.6042 3.7813 50 1 1.6345 -0.2534 4.6385 51 1 1.8740 1.0351 2.4868 52 1 0.4405 -0.0203 2.5118 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001267222088.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:57:30 Heat of formation + Delta-G solvation = 40.485605 kcal Electronic energy + Delta-G solvation = -30772.029490 eV Core-core repulsion = 26772.656960 eV Total energy + Delta-G solvation = -3999.372530 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.05254 -39.59051 -37.88187 -37.31553 -35.30175 -32.86602 -32.01283 -31.64414 -30.67715 -30.40057 -28.82818 -28.06835 -26.04872 -25.44407 -24.12632 -23.64787 -22.67822 -22.33510 -21.22262 -19.83181 -18.50492 -17.66935 -17.39315 -17.07505 -16.33324 -15.88367 -15.77009 -15.50730 -15.22351 -14.89024 -14.71599 -14.46094 -14.21844 -13.90501 -13.76103 -13.63906 -13.45322 -13.19518 -13.04635 -12.86735 -12.77949 -12.60991 -12.48268 -12.01848 -11.84208 -11.75017 -11.44536 -11.17362 -11.01821 -10.90742 -10.78349 -10.44568 -10.38428 -10.18784 -10.15350 -9.97047 -9.58820 -9.53863 -9.46341 -8.89291 -8.81240 -8.39022 -8.11832 -6.86432 -5.69304 -2.96672 0.52307 1.11059 2.47181 2.72937 3.07599 3.47795 3.52890 3.54552 3.71069 4.00876 4.31795 4.39088 4.62187 4.65516 4.71337 4.78250 4.89664 4.95314 5.05370 5.11886 5.21947 5.22861 5.29618 5.31644 5.32837 5.45396 5.52589 5.62001 5.64645 5.65707 5.81026 5.88177 5.97673 6.06489 6.12391 6.18678 6.32333 6.34947 6.43212 6.45098 6.52162 6.59184 6.65024 6.74193 6.81856 6.84487 6.95058 7.05820 7.27350 7.48706 7.65646 7.77387 8.20811 8.50325 9.61029 10.21189 10.55659 11.53702 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.027427 B = 0.002034 C = 0.001978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1020.635397 B =13761.807126 C =14151.550457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.178 3.822 3 H 0.045 0.955 4 N -0.725 5.725 5 C -0.233 4.233 6 H 0.069 0.931 7 C -0.016 4.016 8 N -0.934 5.934 9 Si 0.905 3.095 10 H -0.291 1.291 11 H -0.293 1.293 12 H -0.283 1.283 13 C -0.091 4.091 14 C -0.125 4.125 15 C 0.108 3.892 16 N -0.581 5.581 17 C 0.566 3.434 18 O -0.543 6.543 19 C 0.127 3.873 20 C -0.188 4.188 21 C 0.244 3.756 22 N -0.626 5.626 23 C 0.093 3.907 24 C 0.086 3.914 25 C -0.234 4.234 26 C 0.134 3.866 27 N -0.489 5.489 28 C 0.071 3.929 29 C -0.129 4.129 30 H 0.047 0.953 31 H 0.048 0.952 32 H 0.036 0.964 33 H 0.383 0.617 34 H 0.254 0.746 35 H 0.070 0.930 36 H 0.066 0.934 37 H 0.084 0.916 38 H 0.068 0.932 39 H 0.088 0.912 40 H 0.146 0.854 41 H 0.058 0.942 42 H 0.077 0.923 43 H 0.058 0.942 44 H 0.054 0.946 45 H 0.071 0.929 46 H 0.074 0.926 47 H 0.135 0.865 48 H 0.162 0.838 49 H 0.061 0.939 50 H 0.149 0.851 51 H 0.071 0.929 52 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.400 1.684 31.860 32.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.068 3.932 3 H 0.063 0.937 4 N -0.367 5.367 5 C -0.365 4.365 6 H 0.087 0.913 7 C -0.212 4.212 8 N -0.583 5.583 9 Si 0.736 3.264 10 H -0.219 1.219 11 H -0.219 1.219 12 H -0.209 1.209 13 C -0.110 4.110 14 C -0.163 4.163 15 C -0.014 4.014 16 N -0.312 5.312 17 C 0.352 3.648 18 O -0.421 6.421 19 C -0.010 4.010 20 C -0.214 4.214 21 C 0.133 3.867 22 N -0.337 5.337 23 C -0.050 4.050 24 C -0.057 4.057 25 C -0.259 4.259 26 C -0.024 4.024 27 N -0.204 5.204 28 C -0.051 4.051 29 C -0.168 4.168 30 H 0.066 0.934 31 H 0.067 0.933 32 H 0.055 0.945 33 H 0.218 0.782 34 H 0.064 0.936 35 H 0.088 0.912 36 H 0.085 0.915 37 H 0.102 0.898 38 H 0.086 0.914 39 H 0.106 0.894 40 H 0.163 0.837 41 H 0.077 0.923 42 H 0.096 0.904 43 H 0.076 0.924 44 H 0.073 0.927 45 H 0.090 0.910 46 H 0.093 0.907 47 H 0.153 0.847 48 H 0.180 0.820 49 H 0.079 0.921 50 H 0.165 0.835 51 H 0.089 0.911 52 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -7.199 1.409 31.113 31.966 hybrid contribution -0.340 -0.077 -0.368 0.507 sum -7.539 1.332 30.745 31.684 Atomic orbital electron populations 1.22525 0.99703 1.00812 0.99566 1.20202 0.91659 0.95110 0.86230 0.93748 1.42507 1.78092 1.10749 1.05340 1.19253 1.35944 0.93800 0.87476 0.91331 1.24716 1.02532 0.95983 0.97976 1.69648 1.51274 1.08618 1.28780 0.86218 0.77696 0.78570 0.83892 1.21859 1.21897 1.20895 1.21412 1.00250 0.94638 0.94744 1.21945 1.01152 0.96162 0.97041 1.21781 0.99890 0.96003 0.83725 1.47985 1.54873 1.11828 1.16505 1.17920 0.78478 0.85575 0.82818 1.90755 1.50645 1.18598 1.82075 1.20933 0.94064 0.91570 0.94401 1.21560 1.03608 1.03099 0.93087 1.17961 0.88889 0.91989 0.87829 1.46316 1.48810 1.22641 1.15942 1.21694 1.01712 0.96469 0.85133 1.21808 0.96540 0.84227 1.03098 1.21743 1.03917 0.97375 1.02870 1.22681 0.93470 0.98585 0.87621 1.67640 1.24413 1.06642 1.21752 1.23095 1.00810 0.79322 1.01912 1.22053 1.01106 0.99272 0.94351 0.93365 0.93294 0.94464 0.78177 0.93629 0.91206 0.91545 0.89789 0.91351 0.89363 0.83673 0.92339 0.90443 0.92367 0.92722 0.91004 0.90726 0.84728 0.82036 0.92051 0.83530 0.91051 0.91738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.14 8.79 37.16 0.33 -2.81 16 2 C 0.18 3.58 2.72 -67.93 -0.18 3.40 16 3 H 0.04 0.92 8.08 -51.93 -0.42 0.50 16 4 N -0.72 -18.28 5.04 -53.42 -0.27 -18.55 16 5 C -0.23 -6.56 9.93 -15.06 -0.15 -6.71 16 6 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 7 C -0.02 -0.48 5.50 -17.43 -0.10 -0.58 16 8 N -0.93 -28.57 13.06 55.49 0.72 -27.84 16 9 Si 0.90 22.79 29.55 -169.99 -5.02 17.77 16 10 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 11 H -0.29 -7.44 7.11 56.52 0.40 -7.04 16 12 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 13 C -0.09 -1.53 2.14 -90.58 -0.19 -1.73 16 14 C -0.12 -2.10 4.81 -26.61 -0.13 -2.23 16 15 C 0.11 1.66 6.44 -3.71 -0.02 1.64 16 16 N -0.58 -8.59 2.97 -173.76 -0.52 -9.10 16 17 C 0.57 8.69 7.65 -12.18 -0.09 8.60 16 18 O -0.54 -9.64 15.79 5.35 0.08 -9.56 16 19 C 0.13 1.62 6.58 -83.05 -0.55 1.07 16 20 C -0.19 -2.08 8.78 -38.84 -0.34 -2.42 16 21 C 0.24 2.15 6.57 -83.63 -0.55 1.60 16 22 N -0.63 -4.12 3.40 -187.37 -0.64 -4.76 16 23 C 0.09 0.34 9.43 59.85 0.56 0.91 16 24 C 0.09 0.45 10.19 59.85 0.61 1.06 16 25 C -0.23 -1.73 9.39 -39.15 -0.37 -2.09 16 26 C 0.13 1.09 11.17 -17.64 -0.20 0.89 16 27 N -0.49 -5.43 6.11 -9.89 -0.06 -5.49 16 28 C 0.07 0.92 5.88 -3.71 -0.02 0.90 16 29 C -0.13 -1.80 4.97 -26.61 -0.13 -1.93 16 30 H 0.05 0.93 6.46 -51.93 -0.34 0.59 16 31 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 32 H 0.04 0.60 6.46 -51.93 -0.34 0.26 16 33 H 0.38 10.18 6.04 -40.82 -0.25 9.94 16 34 H 0.25 7.54 8.31 -40.82 -0.34 7.20 16 35 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 36 H 0.07 1.16 6.51 -51.93 -0.34 0.82 16 37 H 0.08 1.58 6.46 -51.93 -0.34 1.25 16 38 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 39 H 0.09 1.41 7.00 -51.93 -0.36 1.05 16 40 H 0.15 1.61 5.88 -52.49 -0.31 1.30 16 41 H 0.06 0.19 7.99 -51.93 -0.41 -0.22 16 42 H 0.08 0.16 7.79 -51.93 -0.40 -0.24 16 43 H 0.06 0.19 7.99 -51.93 -0.41 -0.23 16 44 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 45 H 0.07 0.24 7.92 -51.93 -0.41 -0.18 16 46 H 0.07 0.45 6.25 -51.93 -0.32 0.13 16 47 H 0.13 0.65 6.88 -52.48 -0.36 0.29 16 48 H 0.16 0.81 8.06 -52.48 -0.42 0.39 16 49 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 50 H 0.15 1.80 4.01 -84.98 -0.34 1.46 16 51 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 52 H 0.06 0.93 6.51 -51.93 -0.34 0.59 16 LS Contribution 399.48 15.07 6.02 6.02 Total: -1.00 -34.02 399.48 -9.40 -43.42 By element: Atomic # 1 Polarization: 16.74 SS G_CDS: -8.20 Total: 8.54 kcal Atomic # 6 Polarization: 1.09 SS G_CDS: -1.52 Total: -0.44 kcal Atomic # 7 Polarization: -64.99 SS G_CDS: -0.76 Total: -65.75 kcal Atomic # 8 Polarization: -9.64 SS G_CDS: 0.08 Total: -9.56 kcal Atomic # 14 Polarization: 22.79 SS G_CDS: -5.02 Total: 17.77 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -34.02 -9.40 -43.42 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267222088.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.901 kcal (2) G-P(sol) polarization free energy of solvation -34.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.416 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds