Wall clock time and date at job start Wed Apr 1 2020 03:57:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09003 * 109.46651 * 2 1 4 4 N 1.46500 * 109.47098 * 240.00220 * 2 1 3 5 5 C 1.36939 * 119.99921 * 84.99785 * 4 2 1 6 6 H 1.07989 * 120.00507 * 0.02562 * 5 4 2 7 7 C 1.38817 * 119.99225 * 179.97438 * 5 4 2 8 8 N 1.31609 * 120.00679 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 119.99231 * 180.02562 * 7 5 4 10 10 H 1.48495 * 109.46960 * 90.00552 * 9 7 5 11 11 H 1.48506 * 109.46913 * 209.99956 * 9 7 5 12 12 H 1.48496 * 109.47550 * 330.00238 * 9 7 5 13 13 C 1.52996 * 109.46901 * 119.99841 * 2 1 3 14 14 C 1.53044 * 109.46086 * 60.03088 * 13 2 1 15 15 C 1.53187 * 109.31433 * 178.59954 * 14 13 2 16 16 N 1.46927 * 108.76519 * 54.65477 * 15 14 13 17 17 C 1.34773 * 120.63359 * 126.41176 * 16 15 14 18 18 O 1.21520 * 119.99806 * 352.25077 * 17 16 15 19 19 C 1.48181 * 120.00569 * 172.26187 * 17 16 15 20 20 C 1.39031 * 119.69386 * 170.51491 * 19 17 16 21 21 C 1.39448 * 118.95830 * 179.77785 * 20 19 17 22 22 N 1.39193 * 120.83483 * 180.24343 * 21 20 19 23 23 C 1.46504 * 120.00038 * 180.25088 * 22 21 20 24 24 C 1.46498 * 119.99804 * 0.25303 * 22 21 20 25 25 C 1.39417 * 118.33336 * 0.48867 * 21 20 19 26 26 C 1.38231 * 119.26522 * 359.75216 * 25 21 20 27 27 N 1.31642 * 120.99449 * 0.02562 * 26 25 21 28 28 C 1.46934 * 118.73763 * 306.38248 * 16 15 14 29 29 C 1.53041 * 109.46325 * 299.97245 * 13 2 1 30 30 H 1.09000 * 109.47329 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47025 * 59.99781 * 1 2 3 32 32 H 1.09002 * 109.47284 * 300.00436 * 1 2 3 33 33 H 0.96995 * 119.99508 * 265.00151 * 4 2 1 34 34 H 0.96995 * 120.00405 * 179.97438 * 8 7 5 35 35 H 1.09001 * 109.45925 * 179.97438 * 13 2 1 36 36 H 1.09001 * 109.49754 * 298.56368 * 14 13 2 37 37 H 1.09003 * 109.49985 * 58.65743 * 14 13 2 38 38 H 1.08998 * 109.59818 * 294.86640 * 15 14 13 39 39 H 1.08997 * 109.70418 * 174.50500 * 15 14 13 40 40 H 1.07994 * 120.52099 * 359.97438 * 20 19 17 41 41 H 1.08997 * 109.47080 * 59.99975 * 23 22 21 42 42 H 1.09001 * 109.46920 * 180.02562 * 23 22 21 43 43 H 1.08993 * 109.47136 * 300.00019 * 23 22 21 44 44 H 1.08998 * 109.47404 * 90.00260 * 24 22 21 45 45 H 1.09007 * 109.46854 * 210.00036 * 24 22 21 46 46 H 1.08999 * 109.46964 * 329.99627 * 24 22 21 47 47 H 1.08006 * 120.36856 * 179.73260 * 25 21 20 48 48 H 1.08004 * 119.50535 * 180.02562 * 26 25 21 49 49 H 1.09002 * 109.58466 * 293.82291 * 28 16 15 50 50 H 1.08995 * 109.70045 * 173.46820 * 28 16 15 51 51 H 1.09001 * 109.49707 * 301.34290 * 29 13 2 52 52 H 1.09004 * 109.49103 * 61.40354 * 29 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6906 -1.1962 5 6 2.1491 -0.0074 -2.3758 6 1 1.8927 1.0405 -2.4242 7 6 2.6123 -0.6617 -3.5090 8 7 2.9254 -1.9387 -3.4499 9 14 2.7914 0.2704 -5.1179 10 1 4.1536 0.8554 -5.2021 11 1 2.5815 -0.6609 -6.2555 12 1 1.7814 1.3575 -5.1753 13 6 2.0400 -0.7212 1.2492 14 6 1.5303 -2.1643 1.2486 15 6 2.0714 -2.8932 2.4825 16 7 1.7085 -2.1259 3.6818 17 6 1.0559 -2.7156 4.7030 18 8 0.6379 -3.8502 4.5825 19 6 0.8479 -1.9803 5.9726 20 6 0.0092 -2.5109 6.9462 21 6 -0.1719 -1.8084 8.1372 22 7 -0.9988 -2.3059 9.1403 23 6 -1.1803 -1.5500 10.3821 24 6 -1.6875 -3.5855 8.9543 25 6 0.4919 -0.5927 8.2958 26 6 1.3052 -0.1292 7.2787 27 7 1.4598 -0.8175 6.1673 28 6 2.0711 -0.7035 3.7469 29 6 1.5303 0.0008 2.4987 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 0.5139 0.8899 33 1 2.2490 -1.6317 -1.1526 34 1 3.2487 -2.3960 -4.2419 35 1 3.1300 -0.7215 1.2489 36 1 0.4406 -2.1653 1.2740 37 1 1.8741 -2.6712 0.3470 38 1 3.1563 -2.9725 2.4139 39 1 1.6352 -3.8904 2.5409 40 1 -0.4917 -3.4538 6.7841 41 1 -1.6030 -0.5717 10.1534 42 1 -1.8563 -2.0930 11.0425 43 1 -0.2161 -1.4231 10.8743 44 1 -1.0576 -4.3943 9.3245 45 1 -2.6277 -3.5755 9.5059 46 1 -1.8899 -3.7384 7.8943 47 1 0.3717 -0.0193 9.2031 48 1 1.8216 0.8119 7.3976 49 1 3.1560 -0.6042 3.7813 50 1 1.6345 -0.2534 4.6385 51 1 1.8740 1.0351 2.4868 52 1 0.4405 -0.0203 2.5118 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267222088.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:57:28 Heat of formation + Delta-G solvation = 19.503139 kcal Electronic energy + Delta-G solvation = -30772.939358 eV Core-core repulsion = 26772.656960 eV Total energy + Delta-G solvation = -4000.282398 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -41.93456 -40.59912 -39.21420 -37.92696 -36.84622 -34.64838 -32.96891 -32.33179 -32.23365 -31.58278 -29.85550 -29.21685 -26.98924 -26.41960 -25.67492 -24.99693 -23.77338 -23.22234 -22.43750 -20.95125 -19.81248 -19.25294 -18.47980 -18.17541 -17.09053 -16.96406 -16.62811 -16.57195 -16.22632 -16.04587 -15.92044 -15.50958 -15.42364 -15.15912 -15.06546 -14.87946 -14.60367 -14.23403 -14.12323 -14.04203 -13.61309 -13.49594 -13.20250 -13.16186 -12.99852 -12.94927 -12.83875 -12.75270 -12.59889 -12.33766 -12.14726 -12.01039 -11.73501 -11.60898 -11.54962 -11.33495 -11.30630 -11.10273 -10.86541 -10.22277 -9.81105 -9.59810 -8.95355 -8.65434 -7.90426 -5.17513 -0.27844 0.44418 1.47296 1.49030 1.57197 1.73006 1.86143 2.13462 2.58517 2.90932 3.12781 3.42590 3.66452 3.86544 3.87387 3.92020 3.95073 4.11004 4.13667 4.15624 4.27616 4.37762 4.41560 4.43744 4.49030 4.51390 4.62262 4.69336 4.71386 4.74053 4.76737 4.80460 4.87556 4.89835 4.92170 4.96352 5.00814 5.08317 5.11983 5.14862 5.24816 5.24839 5.36350 5.46436 5.53134 5.58695 5.72880 5.88844 6.12310 6.26302 6.32466 6.39340 6.82670 7.12046 7.38234 8.17618 8.40164 9.33306 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.027427 B = 0.002034 C = 0.001978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1020.635397 B =13761.807126 C =14151.550457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.172 3.828 3 H 0.045 0.955 4 N -0.737 5.737 5 C -0.233 4.233 6 H 0.074 0.926 7 C -0.081 4.081 8 N -0.971 5.971 9 Si 0.970 3.030 10 H -0.287 1.287 11 H -0.298 1.298 12 H -0.271 1.271 13 C -0.081 4.081 14 C -0.115 4.115 15 C 0.114 3.886 16 N -0.583 5.583 17 C 0.560 3.440 18 O -0.580 6.580 19 C 0.105 3.895 20 C -0.200 4.200 21 C 0.240 3.760 22 N -0.627 5.627 23 C 0.086 3.914 24 C 0.081 3.919 25 C -0.221 4.221 26 C 0.134 3.866 27 N -0.504 5.504 28 C 0.074 3.926 29 C -0.120 4.120 30 H 0.038 0.962 31 H 0.031 0.969 32 H 0.070 0.930 33 H 0.373 0.627 34 H 0.249 0.751 35 H 0.061 0.939 36 H 0.058 0.942 37 H 0.057 0.943 38 H 0.075 0.925 39 H 0.077 0.923 40 H 0.133 0.867 41 H 0.067 0.933 42 H 0.095 0.905 43 H 0.066 0.934 44 H 0.055 0.945 45 H 0.095 0.905 46 H 0.060 0.940 47 H 0.168 0.832 48 H 0.198 0.802 49 H 0.067 0.933 50 H 0.165 0.835 51 H 0.092 0.908 52 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.936 4.375 34.943 36.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.064 3.936 3 H 0.063 0.937 4 N -0.378 5.378 5 C -0.365 4.365 6 H 0.092 0.908 7 C -0.272 4.272 8 N -0.622 5.622 9 Si 0.800 3.200 10 H -0.215 1.215 11 H -0.225 1.225 12 H -0.196 1.196 13 C -0.100 4.100 14 C -0.153 4.153 15 C -0.009 4.009 16 N -0.313 5.313 17 C 0.348 3.652 18 O -0.460 6.460 19 C -0.030 4.030 20 C -0.226 4.226 21 C 0.127 3.873 22 N -0.336 5.336 23 C -0.056 4.056 24 C -0.062 4.062 25 C -0.247 4.247 26 C -0.023 4.023 27 N -0.221 5.221 28 C -0.047 4.047 29 C -0.158 4.158 30 H 0.057 0.943 31 H 0.050 0.950 32 H 0.088 0.912 33 H 0.206 0.794 34 H 0.058 0.942 35 H 0.080 0.920 36 H 0.077 0.923 37 H 0.076 0.924 38 H 0.093 0.907 39 H 0.095 0.905 40 H 0.151 0.849 41 H 0.086 0.914 42 H 0.113 0.887 43 H 0.085 0.915 44 H 0.074 0.926 45 H 0.113 0.887 46 H 0.078 0.922 47 H 0.185 0.815 48 H 0.215 0.785 49 H 0.085 0.915 50 H 0.181 0.819 51 H 0.110 0.890 52 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -7.762 4.152 34.257 35.370 hybrid contribution -0.239 -0.892 -1.131 1.460 sum -8.002 3.261 33.126 34.234 Atomic orbital electron populations 1.22373 0.98411 1.00420 1.00300 1.20446 0.92409 0.94946 0.85796 0.93728 1.42734 1.78312 1.10472 1.06289 1.19636 1.34290 0.94106 0.88497 0.90801 1.25525 1.03422 0.96908 1.01385 1.69814 1.52993 1.10183 1.29257 0.85173 0.77827 0.77388 0.79599 1.21466 1.22522 1.19576 1.21287 0.99635 0.94351 0.94740 1.21787 1.00499 0.96405 0.96617 1.21605 1.00044 0.95512 0.83729 1.48071 1.54765 1.12496 1.15998 1.18440 0.77623 0.85387 0.83772 1.90718 1.52126 1.20254 1.82916 1.20527 0.96108 0.92803 0.93580 1.21525 1.03831 1.03150 0.94118 1.18110 0.89299 0.92382 0.87535 1.46605 1.47831 1.22967 1.16238 1.21933 1.02762 0.96828 0.84051 1.21904 0.97587 0.84019 1.02641 1.22092 1.02317 0.96579 1.03674 1.23281 0.93213 0.99163 0.86668 1.67421 1.24792 1.06284 1.23558 1.23255 1.01244 0.78150 1.02027 1.22009 1.00925 1.00028 0.92875 0.94337 0.95022 0.91153 0.79382 0.94248 0.92044 0.92316 0.92428 0.90707 0.90483 0.84886 0.91432 0.88682 0.91517 0.92605 0.88655 0.92173 0.81497 0.78503 0.91492 0.81912 0.88997 0.91853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.78 8.79 71.98 0.63 -5.15 16 2 C 0.17 6.90 2.72 44.99 0.12 7.03 16 3 H 0.04 1.80 8.08 -2.39 -0.02 1.78 16 4 N -0.74 -37.93 5.04 -322.94 -1.63 -39.56 16 5 C -0.23 -13.22 9.93 84.03 0.83 -12.38 16 6 H 0.07 4.03 7.83 -2.92 -0.02 4.00 16 7 C -0.08 -4.74 5.50 84.86 0.47 -4.28 16 8 N -0.97 -60.95 13.06 21.65 0.28 -60.67 16 9 Si 0.97 47.37 29.55 68.60 2.03 49.40 16 10 H -0.29 -13.75 7.11 99.48 0.71 -13.04 16 11 H -0.30 -14.73 7.11 99.48 0.71 -14.02 16 12 H -0.27 -12.51 7.11 99.48 0.71 -11.80 16 13 C -0.08 -2.70 2.14 -10.77 -0.02 -2.73 16 14 C -0.11 -4.01 4.81 30.67 0.15 -3.87 16 15 C 0.11 3.64 6.44 86.36 0.56 4.20 16 16 N -0.58 -17.34 2.97 -821.94 -2.44 -19.78 16 17 C 0.56 17.65 7.65 86.89 0.66 18.31 16 18 O -0.58 -21.71 15.79 -3.78 -0.06 -21.77 16 19 C 0.11 2.65 6.58 41.83 0.28 2.93 16 20 C -0.20 -4.40 8.78 22.75 0.20 -4.20 16 21 C 0.24 3.74 6.57 38.55 0.25 3.99 16 22 N -0.63 -6.81 3.40 -746.71 -2.54 -9.34 16 23 C 0.09 0.33 9.43 127.77 1.21 1.53 16 24 C 0.08 0.75 10.19 127.77 1.30 2.05 16 25 C -0.22 -2.49 9.39 22.55 0.21 -2.28 16 26 C 0.13 1.71 11.17 84.72 0.95 2.66 16 27 N -0.50 -10.22 6.11 -185.21 -1.13 -11.35 16 28 C 0.07 1.84 5.88 86.36 0.51 2.35 16 29 C -0.12 -3.13 4.97 30.67 0.15 -2.98 16 30 H 0.04 1.49 6.46 -2.39 -0.02 1.47 16 31 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 32 H 0.07 2.14 6.46 -2.39 -0.02 2.12 16 33 H 0.37 20.59 6.04 -92.71 -0.56 20.03 16 34 H 0.25 15.19 8.31 -92.71 -0.77 14.42 16 35 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 36 H 0.06 2.12 6.51 -2.39 -0.02 2.10 16 37 H 0.06 2.31 6.46 -2.39 -0.02 2.30 16 38 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 39 H 0.08 2.64 7.00 -2.39 -0.02 2.62 16 40 H 0.13 3.14 5.88 -2.91 -0.02 3.12 16 41 H 0.07 0.17 7.99 -2.39 -0.02 0.15 16 42 H 0.09 0.05 7.79 -2.39 -0.02 0.03 16 43 H 0.07 0.17 7.99 -2.39 -0.02 0.16 16 44 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 45 H 0.09 0.42 7.92 -2.38 -0.02 0.40 16 46 H 0.06 0.74 6.25 -2.39 -0.01 0.73 16 47 H 0.17 0.76 6.88 -2.91 -0.02 0.74 16 48 H 0.20 1.02 8.06 -2.91 -0.02 1.00 16 49 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 50 H 0.17 3.64 4.01 -67.64 -0.27 3.37 16 51 H 0.09 2.07 8.14 -2.39 -0.02 2.05 16 52 H 0.06 1.69 6.51 -2.38 -0.02 1.68 16 Total: -1.00 -75.86 399.48 3.08 -72.78 By element: Atomic # 1 Polarization: 33.00 SS G_CDS: 0.11 Total: 33.11 kcal Atomic # 6 Polarization: -1.27 SS G_CDS: 8.46 Total: 7.19 kcal Atomic # 7 Polarization: -133.25 SS G_CDS: -7.46 Total: -140.71 kcal Atomic # 8 Polarization: -21.71 SS G_CDS: -0.06 Total: -21.77 kcal Atomic # 14 Polarization: 47.37 SS G_CDS: 2.03 Total: 49.40 kcal Total: -75.86 3.08 -72.78 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267222088.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.283 kcal (2) G-P(sol) polarization free energy of solvation -75.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.779 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds