Wall clock time and date at job start Wed Apr 1 2020 04:00:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 109.47035 * 2 1 4 4 N 1.46499 * 109.47421 * 239.99500 * 2 1 3 5 5 C 1.36935 * 120.00057 * 85.00083 * 4 2 1 6 6 H 1.08005 * 119.99917 * 0.02562 * 5 4 2 7 7 C 1.38804 * 120.00165 * 179.97438 * 5 4 2 8 8 N 1.31622 * 120.00237 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 120.00242 * 180.02562 * 7 5 4 10 10 H 1.48511 * 109.46801 * 60.00225 * 9 7 5 11 11 H 1.48497 * 109.47650 * 179.97438 * 9 7 5 12 12 H 1.48498 * 109.47190 * 300.00634 * 9 7 5 13 13 C 1.53005 * 109.46787 * 119.99538 * 2 1 3 14 14 C 1.53036 * 109.46171 * 300.00446 * 13 2 1 15 15 C 1.53190 * 109.31628 * 178.62666 * 14 13 2 16 16 N 1.46928 * 108.77578 * 54.62771 * 15 14 13 17 17 C 1.34783 * 120.62944 * 126.11496 * 16 15 14 18 18 O 1.21276 * 119.99614 * 174.79013 * 17 16 15 19 19 C 1.50702 * 119.99671 * 354.79391 * 17 16 15 20 20 H 1.08987 * 109.43243 * 324.72886 * 19 17 16 21 21 C 1.53031 * 109.42582 * 204.88156 * 19 17 16 22 22 C 1.53368 * 109.74629 * 168.19739 * 21 19 17 23 23 C 1.50945 * 108.20383 * 50.64759 * 22 21 19 24 24 N 1.30133 * 128.28593 * 163.17288 * 23 22 21 25 25 N 1.40319 * 108.12388 * 180.30568 * 24 23 22 26 26 H 0.97003 * 125.99783 * 179.97438 * 25 24 23 27 27 C 1.35192 * 107.99050 * 359.95047 * 25 24 23 28 28 C 1.34570 * 107.62294 * 359.96811 * 27 25 24 29 29 C 1.50884 * 128.32705 * 180.12895 * 28 27 25 30 30 C 1.46922 * 118.74107 * 306.39875 * 16 15 14 31 31 C 1.53041 * 109.45074 * 179.97438 * 13 2 1 32 32 H 1.09002 * 109.47487 * 180.02562 * 1 2 3 33 33 H 1.08997 * 109.47494 * 300.00624 * 1 2 3 34 34 H 1.09004 * 109.46603 * 60.00577 * 1 2 3 35 35 H 0.97000 * 119.99946 * 265.00889 * 4 2 1 36 36 H 0.97002 * 120.00387 * 179.97438 * 8 7 5 37 37 H 1.09006 * 109.45807 * 59.97090 * 13 2 1 38 38 H 1.09003 * 109.49917 * 58.67560 * 14 13 2 39 39 H 1.09005 * 109.49559 * 298.57397 * 14 13 2 40 40 H 1.09001 * 109.58615 * 294.84982 * 15 14 13 41 41 H 1.08991 * 109.70998 * 174.48905 * 15 14 13 42 42 H 1.09000 * 109.42307 * 288.28104 * 21 19 17 43 43 H 1.08999 * 109.42625 * 48.11283 * 21 19 17 44 44 H 1.09004 * 109.71628 * 290.97229 * 22 21 19 45 45 H 1.09000 * 109.71569 * 170.32574 * 22 21 19 46 46 H 1.08006 * 126.18868 * 179.97438 * 27 25 24 47 47 H 1.08998 * 109.71308 * 43.76709 * 29 28 27 48 48 H 1.08997 * 109.71902 * 283.11280 * 29 28 27 49 49 H 1.08999 * 109.58828 * 173.39292 * 30 16 15 50 50 H 1.09001 * 109.58858 * 293.81324 * 30 16 15 51 51 H 1.09001 * 109.49656 * 301.33638 * 31 13 2 52 52 H 1.08997 * 109.49241 * 61.39740 * 31 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0184 -0.6907 -1.1961 5 6 2.1492 -0.0077 -2.3757 6 1 1.8927 1.0403 -2.4242 7 6 2.6125 -0.6619 -3.5088 8 7 2.9255 -1.9390 -3.4497 9 14 2.7916 0.2699 -5.1178 10 1 3.7469 1.3924 -4.9360 11 1 3.3017 -0.6482 -6.1676 12 1 1.4695 0.8068 -5.5288 13 6 2.0399 -0.7212 1.2494 14 6 1.5295 0.0005 2.4987 15 6 2.0134 -0.7439 3.7471 16 7 3.4752 -0.8766 3.6816 17 6 4.2496 -0.4523 4.6999 18 8 5.4455 -0.6523 4.6764 19 6 3.6292 0.2707 5.8676 20 1 2.8051 0.8902 5.5142 21 6 4.6823 1.1584 6.5344 22 6 4.0039 2.1118 7.5258 23 6 3.1088 1.2963 8.4270 24 7 2.5903 1.6371 9.5709 25 7 1.8341 0.5552 10.0470 26 1 1.3366 0.5298 10.8793 27 6 1.9204 -0.4451 9.1417 28 6 2.6992 -0.0148 8.1321 29 6 3.1002 -0.7538 6.8793 30 6 4.0773 -1.4750 2.4824 31 6 3.5703 -0.7215 1.2486 32 1 -0.3634 -1.0277 0.0005 33 1 -0.3634 0.5139 0.8899 34 1 -0.3633 0.5138 -0.8901 35 1 2.2490 -1.6319 -1.1524 36 1 3.2489 -2.3964 -4.2416 37 1 1.6760 -1.7487 1.2495 38 1 0.4398 0.0213 2.4871 39 1 1.9134 1.0206 2.5118 40 1 1.5580 -1.7336 3.7818 41 1 1.7371 -0.1830 4.6397 42 1 5.3997 0.5331 7.0658 43 1 5.2029 1.7383 5.7722 44 1 3.4083 2.8451 6.9820 45 1 4.7606 2.6213 8.1225 46 1 1.4494 -1.4142 9.2154 47 1 2.2343 -1.2685 6.4629 48 1 3.8814 -1.4770 7.1130 49 1 5.1628 -1.3941 2.5393 50 1 3.7902 -2.5243 2.4140 51 1 3.9336 -1.2147 0.3470 52 1 3.9343 0.3056 1.2733 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001267491754.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:00:43 Heat of formation + Delta-G solvation = 33.139723 kcal Electronic energy + Delta-G solvation = -31030.757476 eV Core-core repulsion = 27031.066405 eV Total energy + Delta-G solvation = -3999.691072 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -41.83815 -40.32675 -38.11574 -36.33877 -35.39319 -32.95290 -32.55633 -31.23061 -30.73567 -30.69162 -28.97074 -28.22431 -25.62627 -24.76640 -23.79707 -23.17900 -22.33572 -21.37173 -20.81064 -19.70723 -19.18980 -18.72907 -17.97860 -17.43971 -16.86315 -15.95400 -15.71351 -15.23374 -14.91065 -14.63250 -14.28360 -14.21739 -13.92423 -13.80120 -13.64699 -13.62917 -13.43152 -13.07005 -12.93604 -12.67166 -12.48431 -12.28565 -12.15744 -12.06430 -11.94080 -11.62366 -11.31548 -11.21290 -11.06090 -10.93137 -10.84132 -10.72007 -10.62292 -10.32048 -10.18248 -10.09961 -9.78102 -9.70858 -9.64776 -9.50454 -8.88286 -8.77050 -8.52225 -6.92763 -5.74590 -3.02494 1.56247 2.39140 2.50930 2.63611 3.01803 3.44948 3.49792 3.50333 4.08509 4.33481 4.47559 4.52691 4.59627 4.75571 4.79870 4.89778 5.02864 5.10467 5.11588 5.15906 5.24160 5.31115 5.34671 5.39387 5.45549 5.53556 5.57162 5.62968 5.65763 5.70905 5.79959 5.84171 5.89106 5.95708 5.98000 6.04474 6.11840 6.12693 6.20667 6.31823 6.35373 6.43019 6.50301 6.61557 6.69415 6.86036 6.93801 6.96998 7.14004 7.34399 7.46172 7.71715 8.20777 8.44403 9.55452 10.13882 10.48436 11.47990 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.022370 B = 0.002124 C = 0.002068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1251.386827 B =13181.544555 C =13533.444692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.178 3.822 3 H 0.044 0.956 4 N -0.723 5.723 5 C -0.235 4.235 6 H 0.068 0.932 7 C -0.014 4.014 8 N -0.934 5.934 9 Si 0.904 3.096 10 H -0.287 1.287 11 H -0.292 1.292 12 H -0.287 1.287 13 C -0.089 4.089 14 C -0.130 4.130 15 C 0.104 3.896 16 N -0.606 5.606 17 C 0.519 3.481 18 O -0.544 6.544 19 C -0.105 4.105 20 H 0.096 0.904 21 C -0.096 4.096 22 C -0.040 4.040 23 C 0.086 3.914 24 N -0.290 5.290 25 N -0.486 5.486 26 H 0.439 0.561 27 C 0.063 3.937 28 C -0.233 4.233 29 C -0.028 4.028 30 C 0.110 3.890 31 C -0.121 4.121 32 H 0.045 0.955 33 H 0.037 0.963 34 H 0.050 0.950 35 H 0.383 0.617 36 H 0.255 0.745 37 H 0.067 0.933 38 H 0.078 0.922 39 H 0.065 0.935 40 H 0.069 0.931 41 H 0.084 0.916 42 H 0.076 0.924 43 H 0.079 0.921 44 H 0.086 0.914 45 H 0.086 0.914 46 H 0.177 0.823 47 H 0.076 0.924 48 H 0.076 0.924 49 H 0.088 0.912 50 H 0.065 0.935 51 H 0.091 0.909 52 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.666 2.604 27.275 27.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.068 3.932 3 H 0.062 0.938 4 N -0.364 5.364 5 C -0.366 4.366 6 H 0.086 0.914 7 C -0.210 4.210 8 N -0.582 5.582 9 Si 0.736 3.264 10 H -0.213 1.213 11 H -0.218 1.218 12 H -0.214 1.214 13 C -0.108 4.108 14 C -0.169 4.169 15 C -0.018 4.018 16 N -0.339 5.339 17 C 0.307 3.693 18 O -0.421 6.421 19 C -0.126 4.126 20 H 0.114 0.886 21 C -0.135 4.135 22 C -0.079 4.079 23 C -0.083 4.083 24 N -0.112 5.112 25 N -0.194 5.194 26 H 0.283 0.717 27 C -0.082 4.082 28 C -0.245 4.245 29 C -0.067 4.067 30 C -0.012 4.012 31 C -0.159 4.159 32 H 0.064 0.936 33 H 0.056 0.944 34 H 0.069 0.931 35 H 0.217 0.783 36 H 0.065 0.935 37 H 0.086 0.914 38 H 0.096 0.904 39 H 0.084 0.916 40 H 0.087 0.913 41 H 0.102 0.898 42 H 0.095 0.905 43 H 0.097 0.903 44 H 0.105 0.895 45 H 0.105 0.895 46 H 0.194 0.806 47 H 0.095 0.905 48 H 0.095 0.905 49 H 0.106 0.894 50 H 0.083 0.917 51 H 0.109 0.891 52 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -3.111 3.506 27.967 28.357 hybrid contribution -0.381 -0.609 -1.148 1.355 sum -3.492 2.898 26.818 27.200 Atomic orbital electron populations 1.22499 0.99617 1.00693 0.99784 1.20215 0.91507 0.95326 0.86162 0.93788 1.42401 1.78084 1.10619 1.05273 1.19166 1.36282 0.93750 0.87406 0.91426 1.24708 1.02364 0.95972 0.97971 1.69641 1.51062 1.08605 1.28918 0.86309 0.77713 0.78632 0.83774 1.21347 1.21772 1.21406 1.21372 0.95197 0.99802 0.94475 1.22034 1.01125 0.99673 0.94047 1.21868 0.79697 1.00998 0.99279 1.48200 1.07046 1.60748 1.17936 1.20534 0.86792 0.78659 0.83331 1.90683 1.15163 1.57092 1.79181 1.21370 0.99766 0.97645 0.93825 0.88568 1.21388 0.96867 0.97168 0.98027 1.20184 0.96612 0.96396 0.94705 1.22413 0.97849 0.94691 0.93350 1.77028 1.11880 1.09139 1.13186 1.46328 1.42230 1.10625 1.20232 0.71740 1.22054 1.00472 0.94933 0.90787 1.19988 1.07793 0.96562 1.00138 1.19893 1.00677 0.95799 0.90292 1.21729 0.99303 0.96566 0.83555 1.21885 0.95652 1.01020 0.97386 0.93633 0.94361 0.93074 0.78329 0.93543 0.91441 0.90398 0.91581 0.91288 0.89824 0.90505 0.90262 0.89524 0.89511 0.80622 0.90548 0.90508 0.89381 0.91682 0.89084 0.92081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.82 9.14 37.16 0.34 -2.48 16 2 C 0.18 3.30 2.47 -67.93 -0.17 3.13 16 3 H 0.04 0.86 8.08 -51.93 -0.42 0.44 16 4 N -0.72 -17.23 4.41 -53.43 -0.24 -17.46 16 5 C -0.23 -6.35 9.93 -15.06 -0.15 -6.50 16 6 H 0.07 1.80 7.83 -52.48 -0.41 1.38 16 7 C -0.01 -0.41 5.50 -17.43 -0.10 -0.50 16 8 N -0.93 -27.72 13.06 55.49 0.72 -26.99 16 9 Si 0.90 22.28 29.55 -169.99 -5.02 17.26 16 10 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 11 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 12 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 13 C -0.09 -1.32 1.79 -90.58 -0.16 -1.48 16 14 C -0.13 -1.47 5.04 -26.61 -0.13 -1.60 16 15 C 0.10 1.00 5.94 -3.71 -0.02 0.97 16 16 N -0.61 -7.27 2.97 -172.77 -0.51 -7.78 16 17 C 0.52 6.50 6.75 -10.98 -0.07 6.43 16 18 O -0.54 -8.82 15.70 5.56 0.09 -8.73 16 19 C -0.10 -0.97 1.61 -91.55 -0.15 -1.12 16 20 H 0.10 0.79 6.48 -51.94 -0.34 0.46 16 21 C -0.10 -0.88 4.57 -26.52 -0.12 -1.00 16 22 C -0.04 -0.32 6.31 -27.57 -0.17 -0.50 16 23 C 0.09 0.82 7.10 -82.34 -0.58 0.24 16 24 N -0.29 -2.97 12.68 33.75 0.43 -2.55 16 25 N -0.49 -3.44 7.37 30.35 0.22 -3.21 16 26 H 0.44 1.67 8.96 -182.43 -1.64 0.03 16 27 C 0.06 0.41 11.95 -17.37 -0.21 0.21 16 28 C -0.23 -1.96 5.89 -104.98 -0.62 -2.58 16 29 C -0.03 -0.22 5.39 -27.59 -0.15 -0.37 16 30 C 0.11 1.52 6.42 -3.71 -0.02 1.50 16 31 C -0.12 -1.90 5.22 -26.61 -0.14 -2.04 16 32 H 0.04 0.78 8.14 -51.93 -0.42 0.35 16 33 H 0.04 0.52 6.40 -51.93 -0.33 0.19 16 34 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 35 H 0.38 9.73 7.58 -40.82 -0.31 9.42 16 36 H 0.25 7.39 8.31 -40.82 -0.34 7.05 16 37 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 38 H 0.08 0.80 6.36 -51.93 -0.33 0.47 16 39 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 40 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 41 H 0.08 0.63 4.95 -51.93 -0.26 0.37 16 42 H 0.08 0.78 8.10 -51.93 -0.42 0.36 16 43 H 0.08 0.76 8.08 -51.93 -0.42 0.34 16 44 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 45 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 46 H 0.18 0.53 8.06 -52.48 -0.42 0.10 16 47 H 0.08 0.51 7.29 -51.93 -0.38 0.13 16 48 H 0.08 0.68 8.12 -51.93 -0.42 0.26 16 49 H 0.09 1.33 7.04 -51.93 -0.37 0.97 16 50 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 51 H 0.09 1.69 7.40 -51.93 -0.38 1.31 16 52 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 LS Contribution 400.39 15.07 6.03 6.03 Total: -1.00 -33.71 400.39 -10.69 -44.40 By element: Atomic # 1 Polarization: 16.51 SS G_CDS: -9.78 Total: 6.72 kcal Atomic # 6 Polarization: -5.05 SS G_CDS: -2.63 Total: -7.68 kcal Atomic # 7 Polarization: -58.62 SS G_CDS: 0.63 Total: -57.99 kcal Atomic # 8 Polarization: -8.82 SS G_CDS: 0.09 Total: -8.73 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.02 Total: 17.26 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -33.71 -10.69 -44.40 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267491754.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.536 kcal (2) G-P(sol) polarization free energy of solvation -33.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.396 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds