Wall clock time and date at job start Wed Apr 1 2020 04:00:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 109.47035 * 2 1 4 4 N 1.46499 * 109.47421 * 239.99500 * 2 1 3 5 5 C 1.36935 * 120.00057 * 85.00083 * 4 2 1 6 6 H 1.08005 * 119.99917 * 0.02562 * 5 4 2 7 7 C 1.38804 * 120.00165 * 179.97438 * 5 4 2 8 8 N 1.31622 * 120.00237 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 120.00242 * 180.02562 * 7 5 4 10 10 H 1.48511 * 109.46801 * 60.00225 * 9 7 5 11 11 H 1.48497 * 109.47650 * 179.97438 * 9 7 5 12 12 H 1.48498 * 109.47190 * 300.00634 * 9 7 5 13 13 C 1.53005 * 109.46787 * 119.99538 * 2 1 3 14 14 C 1.53036 * 109.46171 * 300.00446 * 13 2 1 15 15 C 1.53190 * 109.31628 * 178.62666 * 14 13 2 16 16 N 1.46928 * 108.77578 * 54.62771 * 15 14 13 17 17 C 1.34783 * 120.62944 * 126.11496 * 16 15 14 18 18 O 1.21276 * 119.99614 * 174.79013 * 17 16 15 19 19 C 1.50702 * 119.99671 * 354.79391 * 17 16 15 20 20 H 1.08987 * 109.43243 * 324.72886 * 19 17 16 21 21 C 1.53031 * 109.42582 * 204.88156 * 19 17 16 22 22 C 1.53368 * 109.74629 * 168.19739 * 21 19 17 23 23 C 1.50945 * 108.20383 * 50.64759 * 22 21 19 24 24 N 1.30133 * 128.28593 * 163.17288 * 23 22 21 25 25 N 1.40319 * 108.12388 * 180.30568 * 24 23 22 26 26 H 0.97003 * 125.99783 * 179.97438 * 25 24 23 27 27 C 1.35192 * 107.99050 * 359.95047 * 25 24 23 28 28 C 1.34570 * 107.62294 * 359.96811 * 27 25 24 29 29 C 1.50884 * 128.32705 * 180.12895 * 28 27 25 30 30 C 1.46922 * 118.74107 * 306.39875 * 16 15 14 31 31 C 1.53041 * 109.45074 * 179.97438 * 13 2 1 32 32 H 1.09002 * 109.47487 * 180.02562 * 1 2 3 33 33 H 1.08997 * 109.47494 * 300.00624 * 1 2 3 34 34 H 1.09004 * 109.46603 * 60.00577 * 1 2 3 35 35 H 0.97000 * 119.99946 * 265.00889 * 4 2 1 36 36 H 0.97002 * 120.00387 * 179.97438 * 8 7 5 37 37 H 1.09006 * 109.45807 * 59.97090 * 13 2 1 38 38 H 1.09003 * 109.49917 * 58.67560 * 14 13 2 39 39 H 1.09005 * 109.49559 * 298.57397 * 14 13 2 40 40 H 1.09001 * 109.58615 * 294.84982 * 15 14 13 41 41 H 1.08991 * 109.70998 * 174.48905 * 15 14 13 42 42 H 1.09000 * 109.42307 * 288.28104 * 21 19 17 43 43 H 1.08999 * 109.42625 * 48.11283 * 21 19 17 44 44 H 1.09004 * 109.71628 * 290.97229 * 22 21 19 45 45 H 1.09000 * 109.71569 * 170.32574 * 22 21 19 46 46 H 1.08006 * 126.18868 * 179.97438 * 27 25 24 47 47 H 1.08998 * 109.71308 * 43.76709 * 29 28 27 48 48 H 1.08997 * 109.71902 * 283.11280 * 29 28 27 49 49 H 1.08999 * 109.58828 * 173.39292 * 30 16 15 50 50 H 1.09001 * 109.58858 * 293.81324 * 30 16 15 51 51 H 1.09001 * 109.49656 * 301.33638 * 31 13 2 52 52 H 1.08997 * 109.49241 * 61.39740 * 31 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0184 -0.6907 -1.1961 5 6 2.1492 -0.0077 -2.3757 6 1 1.8927 1.0403 -2.4242 7 6 2.6125 -0.6619 -3.5088 8 7 2.9255 -1.9390 -3.4497 9 14 2.7916 0.2699 -5.1178 10 1 3.7469 1.3924 -4.9360 11 1 3.3017 -0.6482 -6.1676 12 1 1.4695 0.8068 -5.5288 13 6 2.0399 -0.7212 1.2494 14 6 1.5295 0.0005 2.4987 15 6 2.0134 -0.7439 3.7471 16 7 3.4752 -0.8766 3.6816 17 6 4.2496 -0.4523 4.6999 18 8 5.4455 -0.6523 4.6764 19 6 3.6292 0.2707 5.8676 20 1 2.8051 0.8902 5.5142 21 6 4.6823 1.1584 6.5344 22 6 4.0039 2.1118 7.5258 23 6 3.1088 1.2963 8.4270 24 7 2.5903 1.6371 9.5709 25 7 1.8341 0.5552 10.0470 26 1 1.3366 0.5298 10.8793 27 6 1.9204 -0.4451 9.1417 28 6 2.6992 -0.0148 8.1321 29 6 3.1002 -0.7538 6.8793 30 6 4.0773 -1.4750 2.4824 31 6 3.5703 -0.7215 1.2486 32 1 -0.3634 -1.0277 0.0005 33 1 -0.3634 0.5139 0.8899 34 1 -0.3633 0.5138 -0.8901 35 1 2.2490 -1.6319 -1.1524 36 1 3.2489 -2.3964 -4.2416 37 1 1.6760 -1.7487 1.2495 38 1 0.4398 0.0213 2.4871 39 1 1.9134 1.0206 2.5118 40 1 1.5580 -1.7336 3.7818 41 1 1.7371 -0.1830 4.6397 42 1 5.3997 0.5331 7.0658 43 1 5.2029 1.7383 5.7722 44 1 3.4083 2.8451 6.9820 45 1 4.7606 2.6213 8.1225 46 1 1.4494 -1.4142 9.2154 47 1 2.2343 -1.2685 6.4629 48 1 3.8814 -1.4770 7.1130 49 1 5.1628 -1.3941 2.5393 50 1 3.7902 -2.5243 2.4140 51 1 3.9336 -1.2147 0.3470 52 1 3.9343 0.3056 1.2733 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267491754.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:00:40 Heat of formation + Delta-G solvation = 11.834493 kcal Electronic energy + Delta-G solvation = -31031.681341 eV Core-core repulsion = 27031.066405 eV Total energy + Delta-G solvation = -4000.614936 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -42.43631 -41.29354 -39.29269 -37.15357 -36.80067 -34.57788 -33.35013 -32.32766 -32.13047 -31.38504 -29.87655 -29.64476 -26.75324 -25.77607 -25.28148 -24.16605 -23.37670 -22.01703 -21.88962 -21.04024 -20.05545 -19.57094 -19.09048 -18.51315 -18.10180 -16.95080 -16.71669 -16.43392 -15.99007 -15.63710 -15.52856 -15.33835 -15.16386 -15.03522 -14.58052 -14.53879 -14.27980 -14.18185 -14.01271 -13.68972 -13.55509 -13.44753 -13.27856 -12.98291 -12.87482 -12.84292 -12.73882 -12.69637 -12.25925 -12.21383 -12.09506 -11.98727 -11.87108 -11.71693 -11.42337 -11.25197 -11.22946 -11.19607 -10.84390 -10.57655 -10.30505 -9.56907 -9.32368 -8.92480 -7.89742 -5.15646 1.03151 1.47368 1.49365 1.55208 1.64699 1.81178 2.03734 2.08943 2.58800 3.38669 3.43805 3.63661 3.80000 3.84280 3.88801 3.93590 3.96965 4.15050 4.21081 4.27025 4.33371 4.39544 4.42539 4.52666 4.57118 4.61805 4.64974 4.72233 4.75369 4.81716 4.84175 4.89258 4.95463 4.98945 5.01655 5.04570 5.08914 5.16172 5.18081 5.21823 5.26671 5.30633 5.35446 5.38908 5.53430 5.57742 5.70316 5.72866 5.74055 6.33401 6.51629 6.53731 6.78012 7.23125 7.39377 8.19398 8.40834 9.33393 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.022370 B = 0.002124 C = 0.002068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1251.386827 B =13181.544555 C =13533.444692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.171 3.829 3 H 0.032 0.968 4 N -0.733 5.733 5 C -0.230 4.230 6 H 0.070 0.930 7 C -0.078 4.078 8 N -0.968 5.968 9 Si 0.965 3.035 10 H -0.282 1.282 11 H -0.298 1.298 12 H -0.279 1.279 13 C -0.079 4.079 14 C -0.123 4.123 15 C 0.104 3.896 16 N -0.605 5.605 17 C 0.517 3.483 18 O -0.588 6.588 19 C -0.096 4.096 20 H 0.115 0.885 21 C -0.092 4.092 22 C -0.035 4.035 23 C 0.071 3.929 24 N -0.328 5.328 25 N -0.479 5.479 26 H 0.451 0.549 27 C 0.080 3.920 28 C -0.255 4.255 29 C -0.019 4.019 30 C 0.119 3.881 31 C -0.112 4.112 32 H 0.043 0.957 33 H 0.080 0.920 34 H 0.027 0.973 35 H 0.372 0.628 36 H 0.248 0.752 37 H 0.068 0.932 38 H 0.101 0.899 39 H 0.064 0.936 40 H 0.088 0.912 41 H 0.115 0.885 42 H 0.060 0.940 43 H 0.070 0.930 44 H 0.098 0.902 45 H 0.088 0.912 46 H 0.215 0.785 47 H 0.098 0.902 48 H 0.064 0.936 49 H 0.068 0.932 50 H 0.074 0.926 51 H 0.053 0.947 52 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.202 3.023 29.542 30.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.063 3.937 3 H 0.051 0.949 4 N -0.374 5.374 5 C -0.362 4.362 6 H 0.088 0.912 7 C -0.270 4.270 8 N -0.620 5.620 9 Si 0.795 3.205 10 H -0.208 1.208 11 H -0.224 1.224 12 H -0.206 1.206 13 C -0.098 4.098 14 C -0.162 4.162 15 C -0.017 4.017 16 N -0.337 5.337 17 C 0.306 3.694 18 O -0.469 6.469 19 C -0.117 4.117 20 H 0.133 0.867 21 C -0.130 4.130 22 C -0.074 4.074 23 C -0.097 4.097 24 N -0.151 5.151 25 N -0.189 5.189 26 H 0.298 0.702 27 C -0.066 4.066 28 C -0.267 4.267 29 C -0.058 4.058 30 C -0.004 4.004 31 C -0.150 4.150 32 H 0.062 0.938 33 H 0.098 0.902 34 H 0.046 0.954 35 H 0.204 0.796 36 H 0.057 0.943 37 H 0.087 0.913 38 H 0.119 0.881 39 H 0.083 0.917 40 H 0.106 0.894 41 H 0.133 0.867 42 H 0.079 0.921 43 H 0.088 0.912 44 H 0.116 0.884 45 H 0.107 0.893 46 H 0.232 0.768 47 H 0.117 0.883 48 H 0.082 0.918 49 H 0.086 0.914 50 H 0.092 0.908 51 H 0.072 0.928 52 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -5.701 3.976 30.285 31.072 hybrid contribution 0.400 -0.716 -1.762 1.944 sum -5.300 3.260 28.522 29.193 Atomic orbital electron populations 1.22342 0.97599 1.00878 1.00692 1.20488 0.92771 0.94618 0.85858 0.94948 1.42598 1.78350 1.10234 1.06172 1.19512 1.34259 0.93906 0.88539 0.91220 1.25443 1.03519 0.96876 1.01142 1.69792 1.52964 1.10008 1.29209 0.85336 0.77815 0.77338 0.80049 1.20840 1.22423 1.20579 1.21259 0.94051 0.99911 0.94591 1.22002 1.02398 0.99180 0.92580 1.22104 0.77676 1.02401 0.99518 1.48267 1.08325 1.60162 1.16913 1.21154 0.86267 0.77996 0.83941 1.90667 1.17277 1.58751 1.80166 1.21368 0.99867 0.97771 0.92678 0.86707 1.21309 0.96749 0.97100 0.97879 1.20141 0.96667 0.96164 0.94409 1.22619 0.98041 0.95559 0.93454 1.76961 1.13367 1.10937 1.13842 1.46394 1.41603 1.10097 1.20812 0.70209 1.22634 0.98891 0.95710 0.89409 1.20096 1.09148 0.96350 1.01098 1.19825 1.01012 0.95056 0.89897 1.21459 0.98305 0.96885 0.83739 1.21711 0.96703 0.99842 0.96792 0.93765 0.90176 0.95414 0.79592 0.94286 0.91322 0.88063 0.91735 0.89397 0.86694 0.92102 0.91169 0.88425 0.89347 0.76829 0.88330 0.91763 0.91355 0.90770 0.92822 0.93506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.94 9.14 71.98 0.66 -4.29 16 2 C 0.17 6.21 2.47 44.99 0.11 6.32 16 3 H 0.03 1.26 8.08 -2.39 -0.02 1.24 16 4 N -0.73 -35.56 4.41 -322.94 -1.42 -36.99 16 5 C -0.23 -12.60 9.93 84.03 0.83 -11.77 16 6 H 0.07 3.72 7.83 -2.91 -0.02 3.69 16 7 C -0.08 -4.46 5.50 84.86 0.47 -3.99 16 8 N -0.97 -59.06 13.06 21.65 0.28 -58.78 16 9 Si 0.96 46.51 29.55 68.60 2.03 48.54 16 10 H -0.28 -13.22 7.11 99.48 0.71 -12.51 16 11 H -0.30 -14.54 7.11 99.48 0.71 -13.83 16 12 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 13 C -0.08 -2.22 1.79 -10.77 -0.02 -2.24 16 14 C -0.12 -2.33 5.04 30.67 0.15 -2.18 16 15 C 0.10 1.56 5.94 86.36 0.51 2.08 16 16 N -0.60 -13.41 2.97 -818.92 -2.43 -15.84 16 17 C 0.52 12.39 6.75 87.66 0.59 12.98 16 18 O -0.59 -19.40 15.70 -3.02 -0.05 -19.45 16 19 C -0.10 -1.57 1.61 -11.40 -0.02 -1.59 16 20 H 0.12 1.47 6.48 -2.39 -0.02 1.45 16 21 C -0.09 -1.63 4.57 30.73 0.14 -1.49 16 22 C -0.03 -0.53 6.31 30.05 0.19 -0.34 16 23 C 0.07 1.24 7.10 43.44 0.31 1.55 16 24 N -0.33 -6.17 12.68 -47.13 -0.60 -6.77 16 25 N -0.48 -5.49 7.37 -57.88 -0.43 -5.91 16 26 H 0.45 2.24 8.96 -213.18 -1.91 0.33 16 27 C 0.08 0.75 11.95 83.34 1.00 1.74 16 28 C -0.26 -3.57 5.89 -20.10 -0.12 -3.69 16 29 C -0.02 -0.25 5.39 30.04 0.16 -0.09 16 30 C 0.12 3.29 6.42 86.36 0.55 3.85 16 31 C -0.11 -3.58 5.22 30.67 0.16 -3.42 16 32 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 33 H 0.08 1.87 6.40 -2.39 -0.02 1.86 16 34 H 0.03 0.99 8.14 -2.38 -0.02 0.97 16 35 H 0.37 19.48 7.58 -92.71 -0.70 18.78 16 36 H 0.25 14.84 8.31 -92.71 -0.77 14.07 16 37 H 0.07 1.96 8.14 -2.38 -0.02 1.94 16 38 H 0.10 1.52 6.36 -2.39 -0.02 1.51 16 39 H 0.06 1.29 8.14 -2.38 -0.02 1.27 16 40 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 41 H 0.12 1.09 4.95 -2.39 -0.01 1.07 16 42 H 0.06 1.26 8.10 -2.39 -0.02 1.24 16 43 H 0.07 1.35 8.08 -2.39 -0.02 1.33 16 44 H 0.10 1.24 8.14 -2.38 -0.02 1.22 16 45 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 46 H 0.22 0.18 8.06 -2.91 -0.02 0.16 16 47 H 0.10 0.85 7.29 -2.39 -0.02 0.83 16 48 H 0.06 1.02 8.12 -2.39 -0.02 1.00 16 49 H 0.07 2.17 7.04 -2.39 -0.02 2.15 16 50 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 51 H 0.05 2.11 7.40 -2.39 -0.02 2.09 16 52 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 Total: -1.00 -76.38 400.39 1.39 -74.99 By element: Atomic # 1 Polarization: 28.45 SS G_CDS: -1.67 Total: 26.78 kcal Atomic # 6 Polarization: -12.25 SS G_CDS: 5.68 Total: -6.56 kcal Atomic # 7 Polarization: -119.69 SS G_CDS: -4.60 Total: -124.29 kcal Atomic # 8 Polarization: -19.40 SS G_CDS: -0.05 Total: -19.45 kcal Atomic # 14 Polarization: 46.51 SS G_CDS: 2.03 Total: 48.54 kcal Total: -76.38 1.39 -74.99 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267491754.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.824 kcal (2) G-P(sol) polarization free energy of solvation -76.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.990 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds