Wall clock time and date at job start Wed Apr 1 2020 04:00:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09006 * 109.46834 * 2 1 4 4 N 1.46502 * 109.47268 * 240.00048 * 2 1 3 5 5 C 1.36934 * 119.99987 * 84.99956 * 4 2 1 6 6 H 1.08003 * 120.00191 * 0.02562 * 5 4 2 7 7 C 1.38818 * 120.00082 * 179.97438 * 5 4 2 8 8 N 1.31617 * 119.99943 * 180.02562 * 7 5 4 9 9 Si 1.86797 * 119.99807 * 359.97438 * 7 5 4 10 10 H 1.48498 * 109.46929 * 90.00123 * 9 7 5 11 11 H 1.48498 * 109.46989 * 210.00220 * 9 7 5 12 12 H 1.48500 * 109.47270 * 330.00015 * 9 7 5 13 13 C 1.52994 * 109.47212 * 119.99818 * 2 1 3 14 14 C 1.53044 * 109.46114 * 300.00289 * 13 2 1 15 15 C 1.53190 * 109.31349 * 178.62418 * 14 13 2 16 16 N 1.46930 * 108.77311 * 54.63798 * 15 14 13 17 17 C 1.34772 * 120.63160 * 126.36842 * 16 15 14 18 18 O 1.21284 * 120.00212 * 4.70420 * 17 16 15 19 19 C 1.50702 * 120.00100 * 184.70973 * 17 16 15 20 20 H 1.09001 * 109.38261 * 324.56889 * 19 17 16 21 21 C 1.53066 * 109.46927 * 84.44218 * 19 17 16 22 22 C 1.53370 * 109.78283 * 191.75311 * 21 19 17 23 23 C 1.50956 * 108.20063 * 309.32978 * 22 21 19 24 24 N 1.30128 * 128.28067 * 196.79870 * 23 22 21 25 25 N 1.40317 * 108.11651 * 179.82111 * 24 23 22 26 26 H 0.96995 * 126.00143 * 180.02562 * 25 24 23 27 27 C 1.35203 * 107.99566 * 0.04073 * 25 24 23 28 28 C 1.34570 * 107.61590 * 0.02562 * 27 25 24 29 29 C 1.50884 * 128.32656 * 179.87806 * 28 27 25 30 30 C 1.46926 * 118.73768 * 306.64053 * 16 15 14 31 31 C 1.52760 * 109.00970 * 53.30818 * 30 16 15 32 32 H 1.09000 * 109.46899 * 60.00203 * 1 2 3 33 33 H 1.08998 * 109.46691 * 179.97438 * 1 2 3 34 34 H 1.08993 * 109.47420 * 299.99890 * 1 2 3 35 35 H 0.96995 * 120.00003 * 264.99522 * 4 2 1 36 36 H 0.97000 * 120.00234 * 180.02562 * 8 7 5 37 37 H 1.08999 * 109.45964 * 59.97768 * 13 2 1 38 38 H 1.09000 * 109.49714 * 58.67453 * 14 13 2 39 39 H 1.09000 * 109.49602 * 298.57966 * 14 13 2 40 40 H 1.08999 * 109.59076 * 294.85242 * 15 14 13 41 41 H 1.08996 * 109.70473 * 174.48836 * 15 14 13 42 42 H 1.09002 * 109.40918 * 71.65391 * 21 19 17 43 43 H 1.09001 * 109.41175 * 311.85137 * 21 19 17 44 44 H 1.09001 * 109.71645 * 189.65198 * 22 21 19 45 45 H 1.09002 * 109.75005 * 69.02353 * 22 21 19 46 46 H 1.07998 * 126.19102 * 180.02562 * 27 25 24 47 47 H 1.08995 * 109.71646 * 316.31422 * 29 28 27 48 48 H 1.08996 * 109.71790 * 76.92537 * 29 28 27 49 49 H 1.09003 * 109.58674 * 173.14553 * 30 16 15 50 50 H 1.09002 * 109.58613 * 293.57147 * 30 16 15 51 51 H 1.08995 * 109.56432 * 185.54982 * 31 30 16 52 52 H 1.09004 * 109.37874 * 65.51720 * 31 30 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6906 -1.1962 5 6 2.1492 -0.0075 -2.3757 6 1 1.8927 1.0405 -2.4242 7 6 2.6125 -0.6617 -3.5090 8 7 2.7386 -0.0050 -4.6427 9 14 3.0581 -2.4738 -3.4248 10 1 1.8615 -3.2931 -3.7441 11 1 4.1338 -2.7651 -4.4062 12 1 3.5333 -2.8036 -2.0571 13 6 2.0400 -0.7212 1.2492 14 6 1.5297 0.0005 2.4986 15 6 2.0137 -0.7440 3.7469 16 7 3.4755 -0.8765 3.6814 17 6 4.2495 -0.4569 4.7018 18 8 3.7379 -0.0433 5.7207 19 6 5.7507 -0.5014 4.5768 20 1 6.0397 -1.3795 3.9993 21 6 6.2408 0.7609 3.8630 22 6 7.7142 0.5962 3.4704 23 6 8.4798 0.1455 4.6909 24 7 9.7653 0.1721 4.8914 25 7 10.0179 -0.3439 6.1716 26 1 10.8898 -0.4420 6.5849 27 6 8.8323 -0.6806 6.7277 28 6 7.8672 -0.3904 5.8359 29 6 6.3769 -0.5813 5.9747 30 6 4.0779 -1.4697 2.4797 31 6 3.5704 -0.7222 1.2480 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3632 -1.0277 -0.0005 34 1 -0.3634 0.5138 0.8899 35 1 2.2492 -1.6317 -1.1526 36 1 3.0620 -0.4621 -5.4347 37 1 1.6763 -1.7487 1.2493 38 1 0.4400 0.0213 2.4871 39 1 1.9134 1.0206 2.5117 40 1 1.5583 -1.7337 3.7817 41 1 1.7374 -0.1830 4.6396 42 1 6.1366 1.6173 4.5291 43 1 5.6430 0.9253 2.9665 44 1 8.1099 1.5492 3.1192 45 1 7.8042 -0.1520 2.6829 46 1 8.6864 -1.1055 7.7098 47 1 6.1706 -1.5568 6.4149 48 1 5.9632 0.2031 6.6084 49 1 5.1633 -1.3852 2.5353 50 1 3.7943 -2.5198 2.4091 51 1 3.9332 -1.2157 0.3464 52 1 3.9350 0.3048 1.2724 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267491759.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:00:48 Heat of formation + Delta-G solvation = 15.324665 kcal Electronic energy + Delta-G solvation = -31332.701143 eV Core-core repulsion = 27332.237552 eV Total energy + Delta-G solvation = -4000.463591 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -42.46375 -41.32594 -39.34001 -37.20435 -36.90600 -34.59357 -33.21726 -32.78195 -32.09797 -31.42977 -30.42892 -29.56906 -26.71195 -25.88492 -25.03961 -24.08121 -23.31684 -22.08379 -21.94427 -21.25580 -20.18332 -19.59087 -19.34602 -18.61619 -18.04790 -16.92017 -16.69559 -16.24664 -16.18358 -15.99347 -15.56748 -15.22845 -15.08870 -14.90741 -14.79544 -14.44933 -14.31723 -14.25401 -14.11921 -13.82210 -13.61618 -13.49284 -13.44645 -13.08100 -12.99771 -12.84872 -12.76694 -12.73012 -12.35017 -12.11354 -11.99629 -11.92757 -11.82136 -11.77398 -11.42547 -11.32906 -11.28920 -11.19755 -10.90614 -10.56608 -10.34143 -9.57926 -9.34306 -9.22421 -7.95404 -5.27269 0.99011 1.41616 1.46107 1.53604 1.62576 1.77843 2.00992 2.08328 2.54792 3.36808 3.38835 3.56759 3.61772 3.82465 3.84813 3.88797 3.90991 4.10804 4.20107 4.23973 4.25879 4.36079 4.45559 4.48761 4.55005 4.59199 4.63015 4.64997 4.73568 4.77358 4.81356 4.86216 4.94059 4.96233 5.02620 5.03343 5.08237 5.10902 5.15603 5.19042 5.25155 5.28037 5.29659 5.41092 5.53168 5.63449 5.69567 5.72625 5.85536 6.28948 6.46896 6.50050 6.74594 7.16494 7.21234 7.93574 8.13377 9.26807 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.012524 B = 0.002766 C = 0.002399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2235.124146 B =10121.135882 C =11666.429271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.177 3.823 3 H 0.034 0.966 4 N -0.746 5.746 5 C -0.218 4.218 6 H 0.050 0.950 7 C -0.069 4.069 8 N -0.990 5.990 9 Si 0.953 3.047 10 H -0.285 1.285 11 H -0.302 1.302 12 H -0.240 1.240 13 C -0.083 4.083 14 C -0.118 4.118 15 C 0.114 3.886 16 N -0.606 5.606 17 C 0.521 3.479 18 O -0.580 6.580 19 C -0.099 4.099 20 H 0.111 0.889 21 C -0.097 4.097 22 C -0.036 4.036 23 C 0.071 3.929 24 N -0.328 5.328 25 N -0.479 5.479 26 H 0.451 0.549 27 C 0.076 3.924 28 C -0.256 4.256 29 C -0.015 4.015 30 C 0.107 3.893 31 C -0.123 4.123 32 H 0.024 0.976 33 H 0.052 0.948 34 H 0.074 0.926 35 H 0.366 0.634 36 H 0.255 0.745 37 H 0.078 0.922 38 H 0.091 0.909 39 H 0.057 0.943 40 H 0.081 0.919 41 H 0.081 0.919 42 H 0.064 0.936 43 H 0.081 0.919 44 H 0.088 0.912 45 H 0.098 0.902 46 H 0.213 0.787 47 H 0.080 0.920 48 H 0.068 0.932 49 H 0.104 0.896 50 H 0.084 0.916 51 H 0.069 0.931 52 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.390 -5.682 27.038 29.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.069 3.931 3 H 0.052 0.948 4 N -0.389 5.389 5 C -0.349 4.349 6 H 0.068 0.932 7 C -0.260 4.260 8 N -0.642 5.642 9 Si 0.781 3.219 10 H -0.212 1.212 11 H -0.229 1.229 12 H -0.164 1.164 13 C -0.102 4.102 14 C -0.156 4.156 15 C -0.008 4.008 16 N -0.338 5.338 17 C 0.311 3.689 18 O -0.460 6.460 19 C -0.120 4.120 20 H 0.129 0.871 21 C -0.136 4.136 22 C -0.075 4.075 23 C -0.097 4.097 24 N -0.151 5.151 25 N -0.189 5.189 26 H 0.298 0.702 27 C -0.070 4.070 28 C -0.268 4.268 29 C -0.053 4.053 30 C -0.015 4.015 31 C -0.162 4.162 32 H 0.043 0.957 33 H 0.071 0.929 34 H 0.093 0.907 35 H 0.199 0.801 36 H 0.064 0.936 37 H 0.096 0.904 38 H 0.110 0.890 39 H 0.076 0.924 40 H 0.099 0.901 41 H 0.099 0.901 42 H 0.083 0.917 43 H 0.100 0.900 44 H 0.107 0.893 45 H 0.116 0.884 46 H 0.230 0.770 47 H 0.098 0.902 48 H 0.087 0.913 49 H 0.122 0.878 50 H 0.102 0.898 51 H 0.088 0.912 52 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 10.252 -4.991 26.965 29.277 hybrid contribution -0.126 -0.826 -0.394 0.924 sum 10.126 -5.818 26.572 29.025 Atomic orbital electron populations 1.22355 0.97818 1.01310 1.00488 1.20407 0.92535 0.94867 0.85257 0.94798 1.42733 1.79833 1.09551 1.06821 1.18973 1.34366 0.94149 0.87454 0.93184 1.25495 1.02765 1.02584 0.95148 1.69898 1.55226 1.37779 1.01259 0.85429 0.77357 0.80604 0.78507 1.21154 1.22916 1.16361 1.21305 0.95447 1.00016 0.93461 1.21915 1.01943 0.98961 0.92810 1.21617 0.79324 1.01352 0.98543 1.48231 1.07240 1.60567 1.17723 1.20912 0.90018 0.75839 0.82174 1.90649 1.76192 1.48701 1.30479 1.21375 0.89691 1.01479 0.99489 0.87114 1.21428 0.95202 0.96273 1.00682 1.20149 0.92137 1.02827 0.92408 1.22642 0.90855 0.98382 0.97819 1.76962 1.17163 1.22233 0.98726 1.46383 1.09255 1.51155 1.12133 0.70213 1.22616 0.84744 0.99273 1.00387 1.20204 0.96929 1.13683 0.95974 1.19694 0.88310 1.02572 0.94749 1.21889 0.99423 0.97484 0.82677 1.21779 0.95600 1.01122 0.97672 0.95661 0.92864 0.90743 0.80088 0.93636 0.90364 0.89024 0.92442 0.90127 0.90079 0.91742 0.90023 0.89321 0.88386 0.77002 0.90170 0.91345 0.87806 0.89799 0.91243 0.92372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.03 9.14 71.98 0.66 -4.37 16 2 C 0.18 6.02 2.47 44.99 0.11 6.13 16 3 H 0.03 1.29 8.08 -2.38 -0.02 1.27 16 4 N -0.75 -32.00 4.21 -322.93 -1.36 -33.36 16 5 C -0.22 -11.97 10.41 84.04 0.87 -11.10 16 6 H 0.05 3.08 8.06 -2.91 -0.02 3.06 16 7 C -0.07 -3.99 5.50 84.86 0.47 -3.52 16 8 N -0.99 -63.10 13.97 21.65 0.30 -62.80 16 9 Si 0.95 43.82 27.73 68.60 1.90 45.72 16 10 H -0.28 -12.99 7.11 99.48 0.71 -12.29 16 11 H -0.30 -14.31 7.11 99.48 0.71 -13.61 16 12 H -0.24 -9.42 6.52 99.48 0.65 -8.77 16 13 C -0.08 -2.06 1.79 -10.77 -0.02 -2.08 16 14 C -0.12 -2.45 5.04 30.67 0.15 -2.29 16 15 C 0.11 2.24 6.42 86.36 0.55 2.79 16 16 N -0.61 -12.05 2.98 -819.73 -2.44 -14.49 16 17 C 0.52 11.51 6.77 87.66 0.59 12.11 16 18 O -0.58 -16.77 15.33 -3.04 -0.05 -16.82 16 19 C -0.10 -1.71 1.64 -11.39 -0.02 -1.73 16 20 H 0.11 1.57 6.26 -2.39 -0.01 1.56 16 21 C -0.10 -1.68 4.98 30.74 0.15 -1.53 16 22 C -0.04 -0.62 6.31 30.05 0.19 -0.43 16 23 C 0.07 1.42 7.10 43.44 0.31 1.73 16 24 N -0.33 -7.06 12.68 -47.13 -0.60 -7.66 16 25 N -0.48 -6.76 7.37 -57.88 -0.43 -7.19 16 26 H 0.45 3.32 8.96 -213.19 -1.91 1.40 16 27 C 0.08 0.95 11.95 83.33 1.00 1.94 16 28 C -0.26 -4.41 5.89 -20.10 -0.12 -4.52 16 29 C -0.01 -0.25 5.27 30.04 0.16 -0.09 16 30 C 0.11 1.89 6.24 86.22 0.54 2.43 16 31 C -0.12 -2.95 5.20 30.53 0.16 -2.79 16 32 H 0.02 0.92 8.14 -2.39 -0.02 0.90 16 33 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 34 H 0.07 1.85 6.40 -2.39 -0.02 1.83 16 35 H 0.37 14.84 5.44 -92.71 -0.50 14.34 16 36 H 0.25 15.55 8.31 -92.71 -0.77 14.78 16 37 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 38 H 0.09 1.69 6.36 -2.39 -0.02 1.67 16 39 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 40 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 41 H 0.08 1.78 7.03 -2.39 -0.02 1.76 16 42 H 0.06 1.25 8.10 -2.39 -0.02 1.23 16 43 H 0.08 1.41 8.08 -2.39 -0.02 1.39 16 44 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 45 H 0.10 1.47 8.14 -2.39 -0.02 1.45 16 46 H 0.21 0.85 8.06 -2.91 -0.02 0.83 16 47 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 48 H 0.07 1.39 7.54 -2.39 -0.02 1.37 16 49 H 0.10 1.48 5.36 -2.39 -0.01 1.46 16 50 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 51 H 0.07 1.93 7.40 -2.39 -0.02 1.92 16 52 H 0.06 1.49 8.14 -2.38 -0.02 1.48 16 Total: -1.00 -76.51 398.01 1.56 -74.95 By element: Atomic # 1 Polarization: 30.50 SS G_CDS: -1.53 Total: 28.96 kcal Atomic # 6 Polarization: -13.08 SS G_CDS: 5.76 Total: -7.32 kcal Atomic # 7 Polarization: -120.98 SS G_CDS: -4.52 Total: -125.50 kcal Atomic # 8 Polarization: -16.77 SS G_CDS: -0.05 Total: -16.82 kcal Atomic # 14 Polarization: 43.82 SS G_CDS: 1.90 Total: 45.72 kcal Total: -76.51 1.56 -74.95 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267491759.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.276 kcal (2) G-P(sol) polarization free energy of solvation -76.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.765 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.952 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds