Wall clock time and date at job start Wed Apr 1 2020 04:00:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08994 * 109.46993 * 2 1 4 4 N 1.46501 * 109.46914 * 120.00266 * 2 1 3 5 5 C 1.36949 * 119.99516 * 275.00017 * 4 2 1 6 6 H 1.07997 * 119.99969 * 359.97438 * 5 4 2 7 7 C 1.38813 * 119.99475 * 180.02562 * 5 4 2 8 8 N 1.31611 * 120.00476 * 359.97438 * 7 5 4 9 9 Si 1.86794 * 119.99393 * 179.97438 * 7 5 4 10 10 H 1.48499 * 109.47430 * 59.99936 * 9 7 5 11 11 H 1.48509 * 109.46956 * 179.97438 * 9 7 5 12 12 H 1.48496 * 109.47355 * 299.99517 * 9 7 5 13 13 C 1.53001 * 109.47016 * 239.99459 * 2 1 3 14 14 C 1.53045 * 109.45592 * 65.00747 * 13 2 1 15 15 C 1.53196 * 109.31008 * 178.61024 * 14 13 2 16 16 N 1.46925 * 108.77559 * 54.63481 * 15 14 13 17 17 C 1.34773 * 120.63607 * 126.36685 * 16 15 14 18 18 O 1.21287 * 119.99675 * 4.71072 * 17 16 15 19 19 C 1.50700 * 120.00766 * 184.70999 * 17 16 15 20 20 H 1.09002 * 109.42286 * 324.60760 * 19 17 16 21 21 C 1.53025 * 109.38399 * 84.47109 * 19 17 16 22 22 C 1.53370 * 109.75375 * 191.75801 * 21 19 17 23 23 C 1.50946 * 108.20796 * 309.34191 * 22 21 19 24 24 N 1.30129 * 128.29140 * 196.73849 * 23 22 21 25 25 N 1.40569 * 108.10456 * 179.89290 * 24 23 22 26 26 H 0.96992 * 126.02330 * 180.02562 * 25 24 23 27 27 C 1.35200 * 107.97005 * 0.02562 * 25 24 23 28 28 C 1.34572 * 107.62079 * 0.04745 * 27 25 24 29 29 C 1.50879 * 128.32750 * 179.86876 * 28 27 25 30 30 C 1.46930 * 118.73821 * 306.64237 * 16 15 14 31 31 C 1.52765 * 109.00761 * 53.30983 * 30 16 15 32 32 H 1.09007 * 109.47112 * 60.00084 * 1 2 3 33 33 H 1.08998 * 109.47316 * 179.97438 * 1 2 3 34 34 H 1.09002 * 109.47264 * 300.00431 * 1 2 3 35 35 H 0.97000 * 120.00233 * 94.99637 * 4 2 1 36 36 H 0.96997 * 120.00701 * 179.97438 * 8 7 5 37 37 H 1.09003 * 109.45622 * 184.97113 * 13 2 1 38 38 H 1.08997 * 109.50108 * 58.66323 * 14 13 2 39 39 H 1.09001 * 109.52531 * 298.57333 * 14 13 2 40 40 H 1.08993 * 109.58863 * 294.84493 * 15 14 13 41 41 H 1.09000 * 109.70188 * 174.48722 * 15 14 13 42 42 H 1.09005 * 109.42389 * 311.84507 * 21 19 17 43 43 H 1.08996 * 109.42799 * 71.67326 * 21 19 17 44 44 H 1.09001 * 109.71549 * 69.01894 * 22 21 19 45 45 H 1.09003 * 109.71872 * 189.61261 * 22 21 19 46 46 H 1.08002 * 126.18554 * 180.02562 * 27 25 24 47 47 H 1.08992 * 109.71884 * 76.99226 * 29 28 27 48 48 H 1.09007 * 109.71659 * 316.38391 * 29 28 27 49 49 H 1.08996 * 109.58954 * 173.14282 * 30 16 15 50 50 H 1.09002 * 109.58432 * 293.56794 * 30 16 15 51 51 H 1.09004 * 109.56326 * 185.55612 * 31 30 16 52 52 H 1.08994 * 109.38836 * 65.51603 * 31 30 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6907 1.1962 5 6 2.1490 -0.0074 2.3758 6 1 1.8926 1.0405 2.4242 7 6 2.6122 -0.6618 3.5091 8 7 2.9252 -1.9387 3.4500 9 14 2.7912 0.2703 5.1179 10 1 1.4690 0.8072 5.5288 11 1 3.3000 -0.6481 6.1681 12 1 3.7464 1.3927 4.9362 13 6 2.0400 -0.7214 -1.2492 14 6 1.6351 0.0693 -2.4955 15 6 2.1770 -0.6374 -3.7420 16 7 1.7130 -2.0314 -3.7346 17 6 1.0632 -2.5446 -4.7979 18 8 0.9313 -1.8824 -5.8055 19 6 0.5004 -3.9411 -4.7352 20 1 1.1645 -4.5735 -4.1459 21 6 -0.8813 -3.9029 -4.0786 22 6 -1.3355 -5.3289 -3.7434 23 6 -1.1764 -6.1779 -4.9813 24 7 -1.7044 -7.3397 -5.2356 25 7 -1.2761 -7.7442 -6.5119 26 1 -1.5157 -8.5713 -6.9584 27 6 -0.4714 -6.7775 -7.0077 28 6 -0.3914 -5.8012 -6.0850 29 6 0.3832 -4.5084 -6.1554 30 6 1.9656 -2.8537 -2.5434 31 6 1.4309 -2.1239 -1.3125 32 1 -0.3634 0.5139 -0.8900 33 1 -0.3634 -1.0276 -0.0005 34 1 -0.3634 0.5139 0.8900 35 1 2.2489 -1.6319 1.1526 36 1 3.2492 -2.3959 4.2418 37 1 3.1264 -0.7990 -1.2055 38 1 2.0499 1.0756 -2.4386 39 1 0.5481 0.1265 -2.5534 40 1 3.2667 -0.6149 -3.7301 41 1 1.8109 -0.1352 -4.6374 42 1 -0.8313 -3.3137 -3.1629 43 1 -1.5958 -3.4466 -4.7637 44 1 -0.7193 -5.7317 -2.9395 45 1 -2.3811 -5.3190 -3.4353 46 1 0.0187 -6.7872 -7.9700 47 1 -0.1437 -3.7982 -6.7926 48 1 1.3780 -4.6972 -6.5593 49 1 1.4579 -3.8127 -2.6470 50 1 3.0377 -3.0156 -2.4318 51 1 1.7004 -2.6784 -0.4136 52 1 0.3458 -2.0465 -1.3807 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001267491762.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:00:58 Heat of formation + Delta-G solvation = 34.803167 kcal Electronic energy + Delta-G solvation = -31283.875035 eV Core-core repulsion = 27284.256096 eV Total energy + Delta-G solvation = -3999.618939 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.74062 -40.37335 -38.20083 -36.35453 -35.38825 -32.93790 -32.46387 -31.39951 -30.59928 -30.49594 -28.99951 -28.12472 -25.61675 -24.77284 -23.80960 -23.22383 -22.62177 -21.27635 -21.18986 -19.60953 -18.98880 -18.28336 -17.92177 -17.33246 -16.97723 -15.97504 -15.48771 -15.25783 -14.93203 -14.75933 -14.34800 -14.26279 -14.09887 -13.78172 -13.64780 -13.50805 -13.16991 -13.09275 -12.89110 -12.77933 -12.61487 -12.36907 -12.12802 -11.99747 -11.85896 -11.59128 -11.34991 -11.21158 -11.05769 -11.03085 -10.82701 -10.58705 -10.56520 -10.31753 -10.24778 -10.11358 -9.77702 -9.64932 -9.57000 -9.52021 -8.89599 -8.65655 -8.56616 -6.94205 -5.76171 -3.03779 1.63549 2.47098 2.57755 2.60776 2.99650 3.44053 3.48935 3.49364 4.15137 4.35640 4.50918 4.59151 4.60012 4.79763 4.88278 4.93117 5.07739 5.10940 5.16433 5.18574 5.23796 5.31960 5.41682 5.43272 5.44999 5.55881 5.57108 5.67297 5.71163 5.76733 5.81670 5.82535 5.90183 5.94978 5.98730 6.02109 6.05388 6.15759 6.22877 6.30082 6.32344 6.39757 6.49220 6.59410 6.69758 6.76808 6.94734 7.01523 7.16825 7.40957 7.43285 7.71002 8.17350 8.43478 9.54480 10.13120 10.47602 11.46673 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.016138 B = 0.002370 C = 0.002167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1734.645307 B =11810.360074 C =12917.404188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.178 3.822 3 H 0.045 0.955 4 N -0.724 5.724 5 C -0.236 4.236 6 H 0.068 0.932 7 C -0.014 4.014 8 N -0.935 5.935 9 Si 0.905 3.095 10 H -0.287 1.287 11 H -0.292 1.292 12 H -0.287 1.287 13 C -0.090 4.090 14 C -0.127 4.127 15 C 0.112 3.888 16 N -0.605 5.605 17 C 0.521 3.479 18 O -0.548 6.548 19 C -0.105 4.105 20 H 0.096 0.904 21 C -0.105 4.105 22 C -0.038 4.038 23 C 0.085 3.915 24 N -0.289 5.289 25 N -0.488 5.488 26 H 0.438 0.562 27 C 0.062 3.938 28 C -0.233 4.233 29 C -0.023 4.023 30 C 0.102 3.898 31 C -0.129 4.129 32 H 0.036 0.964 33 H 0.049 0.951 34 H 0.049 0.951 35 H 0.383 0.617 36 H 0.255 0.745 37 H 0.072 0.928 38 H 0.073 0.927 39 H 0.068 0.932 40 H 0.065 0.935 41 H 0.087 0.913 42 H 0.081 0.919 43 H 0.075 0.925 44 H 0.090 0.910 45 H 0.088 0.912 46 H 0.176 0.824 47 H 0.084 0.916 48 H 0.071 0.929 49 H 0.085 0.915 50 H 0.070 0.930 51 H 0.085 0.915 52 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.713 -8.451 -21.974 24.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.068 3.932 3 H 0.063 0.937 4 N -0.366 5.366 5 C -0.367 4.367 6 H 0.086 0.914 7 C -0.210 4.210 8 N -0.583 5.583 9 Si 0.736 3.264 10 H -0.214 1.214 11 H -0.218 1.218 12 H -0.214 1.214 13 C -0.109 4.109 14 C -0.166 4.166 15 C -0.010 4.010 16 N -0.338 5.338 17 C 0.309 3.691 18 O -0.426 6.426 19 C -0.126 4.126 20 H 0.115 0.885 21 C -0.143 4.143 22 C -0.077 4.077 23 C -0.084 4.084 24 N -0.111 5.111 25 N -0.197 5.197 26 H 0.282 0.718 27 C -0.084 4.084 28 C -0.244 4.244 29 C -0.062 4.062 30 C -0.021 4.021 31 C -0.167 4.167 32 H 0.055 0.945 33 H 0.068 0.932 34 H 0.068 0.932 35 H 0.217 0.783 36 H 0.065 0.935 37 H 0.090 0.910 38 H 0.091 0.909 39 H 0.087 0.913 40 H 0.083 0.917 41 H 0.106 0.894 42 H 0.100 0.900 43 H 0.093 0.907 44 H 0.108 0.892 45 H 0.107 0.893 46 H 0.193 0.807 47 H 0.103 0.897 48 H 0.090 0.910 49 H 0.103 0.897 50 H 0.088 0.912 51 H 0.103 0.897 52 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -6.490 -8.905 -21.927 24.540 hybrid contribution 0.650 0.231 0.478 0.840 sum -5.840 -8.674 -21.449 23.862 Atomic orbital electron populations 1.22530 0.99587 1.00837 0.99683 1.20196 0.91733 0.95175 0.86087 0.93716 1.42450 1.78162 1.10677 1.05308 1.19199 1.36235 0.93809 0.87444 0.91377 1.24701 1.02358 0.95976 0.97967 1.69628 1.51122 1.08635 1.28951 0.86304 0.77744 0.78620 0.83739 1.21373 1.21765 1.21362 1.21395 1.00420 0.94510 0.94604 1.21994 1.01625 0.99089 0.93880 1.21622 0.98819 0.81115 0.99465 1.48156 1.56627 1.12931 1.16093 1.20535 0.77358 0.88632 0.82544 1.90659 1.58993 1.62032 1.30916 1.21371 0.98394 0.93897 0.98972 0.88549 1.21507 0.94901 0.96373 1.01520 1.20142 1.03169 0.92153 0.92256 1.22425 0.95881 0.92907 0.97206 1.77097 1.22891 1.14674 0.96420 1.46385 1.40011 1.19070 1.14208 0.71818 1.22034 0.96555 0.89942 0.99866 1.20106 1.08401 1.00080 0.95860 1.19808 0.99185 0.92022 0.95141 1.21862 1.01323 0.94169 0.84710 1.21932 1.00962 0.96678 0.97104 0.94510 0.93234 0.93213 0.78260 0.93538 0.91007 0.90858 0.91331 0.91710 0.89422 0.90021 0.90666 0.89212 0.89349 0.80701 0.89729 0.91019 0.89709 0.91188 0.89668 0.91255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.85 8.76 37.16 0.33 -2.53 16 2 C 0.18 3.29 2.67 -67.93 -0.18 3.11 16 3 H 0.04 0.87 8.08 -51.93 -0.42 0.45 16 4 N -0.72 -17.10 5.06 -53.42 -0.27 -17.37 16 5 C -0.24 -6.35 9.93 -15.05 -0.15 -6.49 16 6 H 0.07 1.80 7.83 -52.49 -0.41 1.39 16 7 C -0.01 -0.40 5.50 -17.43 -0.10 -0.50 16 8 N -0.93 -27.45 13.06 55.49 0.72 -26.72 16 9 Si 0.90 22.09 29.55 -169.99 -5.02 17.07 16 10 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 11 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 12 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 13 C -0.09 -1.32 2.08 -90.58 -0.19 -1.51 16 14 C -0.13 -1.58 5.08 -26.61 -0.14 -1.72 16 15 C 0.11 1.33 6.42 -3.71 -0.02 1.31 16 16 N -0.61 -7.07 2.98 -173.03 -0.52 -7.59 16 17 C 0.52 6.37 6.76 -10.99 -0.07 6.30 16 18 O -0.55 -8.39 15.33 5.55 0.09 -8.31 16 19 C -0.11 -1.01 1.64 -91.56 -0.15 -1.16 16 20 H 0.10 0.84 6.26 -51.93 -0.33 0.52 16 21 C -0.10 -0.94 4.98 -26.53 -0.13 -1.08 16 22 C -0.04 -0.33 6.31 -27.57 -0.17 -0.51 16 23 C 0.08 0.89 7.11 -82.31 -0.58 0.30 16 24 N -0.29 -3.24 12.69 33.77 0.43 -2.81 16 25 N -0.49 -3.91 7.38 30.35 0.22 -3.68 16 26 H 0.44 2.04 8.96 -182.25 -1.63 0.40 16 27 C 0.06 0.46 11.95 -17.36 -0.21 0.26 16 28 C -0.23 -2.22 5.89 -104.95 -0.62 -2.83 16 29 C -0.02 -0.22 5.27 -27.60 -0.15 -0.36 16 30 C 0.10 1.11 6.24 -3.93 -0.02 1.08 16 31 C -0.13 -1.70 4.70 -26.83 -0.13 -1.83 16 32 H 0.04 0.54 6.60 -51.93 -0.34 0.19 16 33 H 0.05 0.84 6.38 -51.93 -0.33 0.51 16 34 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 35 H 0.38 9.47 6.35 -40.82 -0.26 9.21 16 36 H 0.25 7.31 8.31 -40.82 -0.34 6.97 16 37 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 38 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 39 H 0.07 0.88 6.64 -51.93 -0.34 0.53 16 40 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.09 1.10 7.03 -51.93 -0.37 0.74 16 42 H 0.08 0.73 8.08 -51.93 -0.42 0.31 16 43 H 0.07 0.73 8.10 -51.93 -0.42 0.31 16 44 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 45 H 0.09 0.73 8.14 -51.93 -0.42 0.30 16 46 H 0.18 0.70 8.06 -52.49 -0.42 0.28 16 47 H 0.08 0.90 7.54 -51.93 -0.39 0.51 16 48 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 49 H 0.08 0.76 5.36 -51.93 -0.28 0.49 16 50 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 51 H 0.08 1.30 6.74 -51.93 -0.35 0.95 16 52 H 0.07 0.91 6.43 -51.93 -0.33 0.58 16 LS Contribution 396.53 15.07 5.98 5.98 Total: -1.00 -33.34 396.53 -10.62 -43.97 By element: Atomic # 1 Polarization: 17.19 SS G_CDS: -9.57 Total: 7.62 kcal Atomic # 6 Polarization: -5.47 SS G_CDS: -2.69 Total: -8.16 kcal Atomic # 7 Polarization: -58.76 SS G_CDS: 0.59 Total: -58.17 kcal Atomic # 8 Polarization: -8.39 SS G_CDS: 0.09 Total: -8.31 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.07 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -33.34 -10.62 -43.97 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267491762.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.769 kcal (2) G-P(sol) polarization free energy of solvation -33.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.966 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds